ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 8 |
| Acc36I | ACCTGC | 1 cut(s) | 8 |
| AccB1I | GGYRCC | 1 cut(s) | 516 |
| AciI | CCGC | 3 cut(s) | 65, 124, 162 |
| AclWI | GGATC | 3 cut(s) | 49, 55, 252 |
| AdeI | CACNNNGTG | 1 cut(s) | 310 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 168, 340, 512 |
| AgsI | TTSAA | 3 cut(s) | 236, 446, 548 |
| AjnI | CCWGG | 2 cut(s) | 154, 572 |
| Alw26I | GTCTC | 1 cut(s) | 281 |
| AlwI | GGATC | 3 cut(s) | 49, 55, 252 |
| Ama87I | CYCGRG | 1 cut(s) | 339 |
| AoxI | GGCC | 2 cut(s) | 159, 531 |
| ApeKI | GCWGC | 2 cut(s) | 67, 490 |
| AspLEI | GCGC | 1 cut(s) | 132 |
| AspS9I | GGNCC | 2 cut(s) | 159, 370 |
| AvaI | CYCGRG | 1 cut(s) | 339 |
| AvaII | GGWCC | 1 cut(s) | 370 |
| BaeGI | GKGCMC | 1 cut(s) | 519 |
| BanI | GGYRCC | 1 cut(s) | 516 |
| BbvI | GCAGC | 2 cut(s) | 79, 502 |
| BccI | CCATC | 1 cut(s) | 107 |
| BceAI | ACGGC | 1 cut(s) | 93 |
| BciT130I | CCWGG | 2 cut(s) | 156, 574 |
| BcoDI | GTCTC | 1 cut(s) | 281 |
| BfaI | CTAG | 1 cut(s) | 360 |
| BfoI | RGCGCY | 1 cut(s) | 133 |
| BfuAI | ACCTGC | 1 cut(s) | 8 |
| BisI | GCNGC | 3 cut(s) | 68, 162, 491 |
| BlsI | GCNGC | 3 cut(s) | 69, 163, 492 |
| Bme1390I | CCNGG | 2 cut(s) | 156, 574 |
| Bme18I | GGWCC | 1 cut(s) | 370 |
| BmeT110I | CYCGRG | 1 cut(s) | 339 |
| BmgT120I | GGNCC | 2 cut(s) | 159, 370 |
| BmiI | GGNNCC | 2 cut(s) | 160, 518 |
| BmrFI | CCNGG | 2 cut(s) | 156, 574 |
| BmsI | GCATC | 2 cut(s) | 82, 559 |
| BpuEI | CTTGAG | 1 cut(s) | 176 |
| BsaBI | GATNNNNATC | 2 cut(s) | 59, 213 |
| BsaJI | CCNNGG | 2 cut(s) | 155, 221 |
| BsaWI | WCCGGW | 1 cut(s) | 505 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 168, 340, 512 |
| Bse1I | ACTGG | 2 cut(s) | 559, 570 |
| Bse3DI | GCAATG | 1 cut(s) | 102 |
| Bse8I | GATNNNNATC | 2 cut(s) | 59, 213 |
| BseBI | CCWGG | 2 cut(s) | 156, 574 |
| BseDI | CCNNGG | 2 cut(s) | 155, 221 |
| BseGI | GGATG | 4 cut(s) | 330, 345, 502, 574 |
| BseJI | GATNNNNATC | 2 cut(s) | 59, 213 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 168, 340, 512 |
| BseMI | GCAATG | 1 cut(s) | 102 |
| BseNI | ACTGG | 2 cut(s) | 559, 570 |
| BseRI | GAGGAG | 1 cut(s) | 436 |
| BseSI | GKGCMC | 1 cut(s) | 519 |
| BseXI | GCAGC | 2 cut(s) | 79, 502 |
| BshFI | GGCC | 2 cut(s) | 161, 533 |
| BshNI | GGYRCC | 1 cut(s) | 516 |
| BsiHKCI | CYCGRG | 1 cut(s) | 339 |
| BsiSI | CCGG | 1 cut(s) | 506 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 168, 340, 512 |
| BsmAI | GTCTC | 1 cut(s) | 281 |
| BsmBI | CGTCTC | 1 cut(s) | 281 |
| BsnI | GGCC | 2 cut(s) | 161, 533 |
| BsoBI | CYCGRG | 1 cut(s) | 339 |
| Bsp1286I | GDGCHC | 1 cut(s) | 519 |
| Bsp143I | GATC | 3 cut(s) | 54, 60, 244 |
| Bsp19I | CCATGG | 1 cut(s) | 221 |
| BspACI | CCGC | 3 cut(s) | 65, 124, 162 |
| BspANI | GGCC | 2 cut(s) | 161, 533 |
| BspHI | TCATGA | 1 cut(s) | 475 |
| BspLI | GGNNCC | 2 cut(s) | 160, 518 |
| BspMI | ACCTGC | 1 cut(s) | 8 |
| BspPI | GGATC | 3 cut(s) | 49, 55, 252 |
| BspT107I | GGYRCC | 1 cut(s) | 516 |
| BsrDI | GCAATG | 1 cut(s) | 102 |
| BsrI | ACTGG | 2 cut(s) | 559, 570 |
| BssECI | CCNNGG | 2 cut(s) | 155, 221 |
| BssMI | GATC | 3 cut(s) | 54, 60, 244 |
| BssT1I | CCWWGG | 1 cut(s) | 221 |
| Bst2UI | CCWGG | 2 cut(s) | 156, 574 |
| Bst4CI | ACNGT | 1 cut(s) | 149 |
| Bst6I | CTCTTC | 1 cut(s) | 413 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 569 |
| BstC8I | GCNNGC | 1 cut(s) | 15 |
| BstDSI | CCRYGG | 1 cut(s) | 221 |
| BstF5I | GGATG | 4 cut(s) | 330, 345, 502, 574 |
| BstH2I | RGCGCY | 1 cut(s) | 133 |
| BstHHI | GCGC | 1 cut(s) | 132 |
| BstKTI | GATC | 3 cut(s) | 57, 63, 247 |
| BstMAI | GTCTC | 1 cut(s) | 281 |
| BstMBI | GATC | 3 cut(s) | 54, 60, 244 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 496, 569 |
| BstNI | CCWGG | 2 cut(s) | 156, 574 |
| BstSCI | CCNGG | 2 cut(s) | 154, 572 |
| BstSLI | GKGCMC | 1 cut(s) | 519 |
| BstV1I | GCAGC | 2 cut(s) | 79, 502 |
| BstX2I | RGATCY | 3 cut(s) | 54, 60, 244 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 273 |
| BstYI | RGATCY | 3 cut(s) | 54, 60, 244 |
| BsuRI | GGCC | 2 cut(s) | 161, 533 |
| BtgI | CCRYGG | 1 cut(s) | 221 |
| BtsCI | GGATG | 4 cut(s) | 330, 345, 502, 574 |
| BtsI | GCAGTG | 1 cut(s) | 500 |
| BtsIMutI | CAGTG | 2 cut(s) | 500, 563 |
| BveI | ACCTGC | 1 cut(s) | 8 |
| Cac8I | GCNNGC | 1 cut(s) | 15 |
| CciI | TCATGA | 1 cut(s) | 475 |
| CfoI | GCGC | 1 cut(s) | 132 |
| Cfr13I | GGNCC | 2 cut(s) | 159, 370 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 84, 119 |
| CviAII | CATG | 4 cut(s) | 173, 222, 464, 476 |
| CviJI | RGCY | 7 cut(s) | 13, 70, 80, 161, 197, 471, 533 |
| CviKI_1 | RGCY | 7 cut(s) | 13, 70, 80, 161, 197, 471, 533 |
| DpnI | GATC | 3 cut(s) | 56, 62, 246 |
| DpnII | GATC | 3 cut(s) | 54, 60, 244 |
| DraIII | CACNNNGTG | 1 cut(s) | 310 |
| Eam1104I | CTCTTC | 1 cut(s) | 413 |
| EarI | CTCTTC | 1 cut(s) | 413 |
| Eco130I | CCWWGG | 1 cut(s) | 221 |
| Eco32I | GATATC | 2 cut(s) | 187, 428 |
| Eco47I | GGWCC | 1 cut(s) | 370 |
| Eco88I | CYCGRG | 1 cut(s) | 339 |
| EcoRII | CCWGG | 2 cut(s) | 154, 572 |
| EcoRV | GATATC | 2 cut(s) | 187, 428 |
| EcoT14I | CCWWGG | 1 cut(s) | 221 |
| ErhI | CCWWGG | 1 cut(s) | 221 |
| Esp3I | CGTCTC | 1 cut(s) | 281 |
| FaeI | CATG | 4 cut(s) | 176, 225, 467, 479 |
| FatI | CATG | 4 cut(s) | 172, 221, 463, 475 |
| FauI | CCCGC | 1 cut(s) | 72 |
| Fnu4HI | GCNGC | 3 cut(s) | 68, 162, 491 |
| FokI | GGATG | 3 cut(s) | 317, 332, 489 |
| Fsp4HI | GCNGC | 3 cut(s) | 68, 162, 491 |
| FspBI | CTAG | 1 cut(s) | 360 |
| GlaI | GCGC | 1 cut(s) | 131 |
| GluI | GCNGC | 3 cut(s) | 68, 162, 491 |
| HaeII | RGCGCY | 1 cut(s) | 133 |
| HaeIII | GGCC | 2 cut(s) | 161, 533 |
| HapII | CCGG | 1 cut(s) | 506 |
| HhaI | GCGC | 1 cut(s) | 132 |
| Hin1II | CATG | 4 cut(s) | 176, 225, 467, 479 |
| Hin6I | GCGC | 1 cut(s) | 130 |
| HinP1I | GCGC | 1 cut(s) | 130 |
| HinfI | GANTC | 3 cut(s) | 176, 281, 446 |
| HpaII | CCGG | 1 cut(s) | 506 |
| Hpy188I | TCNGA | 4 cut(s) | 286, 322, 370, 381 |
| Hpy188III | TCNNGA | 4 cut(s) | 37, 58, 415, 476 |
| HpyAV | CCTTC | 2 cut(s) | 101, 286 |
| HpyCH4III | ACNGT | 1 cut(s) | 149 |
| HpyCH4V | TGCA | 4 cut(s) | 95, 304, 460, 563 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 496, 569 |
| Hsp92II | CATG | 4 cut(s) | 176, 225, 467, 479 |
| HspAI | GCGC | 1 cut(s) | 130 |
| Kzo9I | GATC | 3 cut(s) | 54, 60, 244 |
| Lsp1109I | GCAGC | 2 cut(s) | 79, 502 |
| LweI | GCATC | 2 cut(s) | 82, 559 |
| MaeI | CTAG | 1 cut(s) | 360 |
| MalI | GATC | 3 cut(s) | 56, 62, 246 |
| MboI | GATC | 3 cut(s) | 54, 60, 244 |
| MboII | GAAGA | 6 cut(s) | 56, 64, 209, 430, 550, 553 |
| MflI | RGATCY | 3 cut(s) | 54, 60, 244 |
| MhlI | GDGCHC | 1 cut(s) | 519 |
| MluCI | AATT | 1 cut(s) | 236 |
| MmeI | TCCRAC | 1 cut(s) | 348 |
| MnlI | CCTC | 4 cut(s) | 200, 414, 460, 544 |
| MseI | TTAA | 1 cut(s) | 74 |
| MspA1I | CMGCKG | 1 cut(s) | 164 |
| MspI | CCGG | 1 cut(s) | 506 |
| MspR9I | CCNGG | 2 cut(s) | 156, 574 |
| MvaI | CCWGG | 2 cut(s) | 156, 574 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 496, 569 |
| NcoI | CCATGG | 1 cut(s) | 221 |
| NdeII | GATC | 3 cut(s) | 54, 60, 244 |
| NlaIII | CATG | 4 cut(s) | 176, 225, 467, 479 |
| NlaIV | GGNNCC | 2 cut(s) | 160, 518 |
| PagI | TCATGA | 1 cut(s) | 475 |
| PaqCI | CACCTGC | 1 cut(s) | 8 |
| PfeI | GAWTC | 3 cut(s) | 176, 281, 446 |
| PkrI | GCNGC | 3 cut(s) | 69, 163, 492 |
| Psp6I | CCWGG | 2 cut(s) | 154, 572 |
| PspGI | CCWGG | 2 cut(s) | 154, 572 |
| PspN4I | GGNNCC | 2 cut(s) | 160, 518 |
| PspPI | GGNCC | 2 cut(s) | 159, 370 |
| PsuI | RGATCY | 3 cut(s) | 54, 60, 244 |
| SaqAI | TTAA | 1 cut(s) | 74 |
| SatI | GCNGC | 3 cut(s) | 68, 162, 491 |
| Sau3AI | GATC | 3 cut(s) | 54, 60, 244 |
| Sau96I | GGNCC | 2 cut(s) | 159, 370 |
| ScrFI | CCNGG | 2 cut(s) | 156, 574 |
| SduI | GDGCHC | 1 cut(s) | 519 |
| SetI | ASST | 4 cut(s) | 22, 297, 361, 437 |
| SfaNI | GCATC | 2 cut(s) | 82, 559 |
| SinI | GGWCC | 1 cut(s) | 370 |
| SmlI | CTYRAG | 1 cut(s) | 191 |
| SmoI | CTYRAG | 1 cut(s) | 191 |
| Sse9I | AATT | 1 cut(s) | 236 |
| SsiI | CCGC | 3 cut(s) | 65, 124, 162 |
| SspMI | CTAG | 1 cut(s) | 360 |
| StyD4I | CCNGG | 2 cut(s) | 154, 572 |
| StyI | CCWWGG | 1 cut(s) | 221 |
| TaaI | ACNGT | 1 cut(s) | 149 |
| TaqI | TCGA | 1 cut(s) | 536 |
| TasI | AATT | 1 cut(s) | 236 |
| TauI | GCSGC | 1 cut(s) | 164 |
| TfiI | GAWTC | 3 cut(s) | 176, 281, 446 |
| Tru1I | TTAA | 1 cut(s) | 74 |
| Tru9I | TTAA | 1 cut(s) | 74 |
| TscAI | CASTG | 2 cut(s) | 500, 570 |
| TseI | GCWGC | 2 cut(s) | 67, 490 |
| TspDTI | ATGAA | 3 cut(s) | 57, 189, 319 |
| TspRI | CASTG | 2 cut(s) | 500, 570 |
| VpaK11BI | GGWCC | 1 cut(s) | 370 |
| XspI | CTAG | 1 cut(s) | 360 |