Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 400 |
| AcoI | YGGCCR | 1 cut(s) | 720 |
| AcsI | RAATTY | 2 cut(s) | 64, 438 |
| AfaI | GTAC | 2 cut(s) | 286, 736 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 562 |
| AflII | CTTAAG | 1 cut(s) | 730 |
| AgsI | TTSAA | 4 cut(s) | 299, 437, 504, 623 |
| AluBI | AGCT | 5 cut(s) | 23, 86, 281, 416, 595 |
| AluI | AGCT | 5 cut(s) | 23, 86, 281, 416, 595 |
| Alw26I | GTCTC | 1 cut(s) | 78 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 713 |
| AoxI | GGCC | 1 cut(s) | 720 |
| ApeKI | GCWGC | 1 cut(s) | 595 |
| ApoI | RAATTY | 2 cut(s) | 64, 438 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 40, 72 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 250, 272, 469 |
| AspS9I | GGNCC | 1 cut(s) | 743 |
| AvaII | GGWCC | 1 cut(s) | 743 |
| BalI | TGGCCA | 1 cut(s) | 722 |
| BbsI | GAAGAC | 1 cut(s) | 47 |
| BbvI | GCAGC | 1 cut(s) | 582 |
| BccI | CCATC | 3 cut(s) | 210, 227, 232 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 40, 74 |
| BcoDI | GTCTC | 1 cut(s) | 78 |
| BfaI | CTAG | 3 cut(s) | 366, 422, 738 |
| BfrI | CTTAAG | 1 cut(s) | 730 |
| BisI | GCNGC | 1 cut(s) | 596 |
| BlsI | GCNGC | 1 cut(s) | 597 |
| BmcAI | AGTACT | 1 cut(s) | 736 |
| Bme18I | GGWCC | 1 cut(s) | 743 |
| BmgT120I | GGNCC | 1 cut(s) | 743 |
| BmiI | GGNNCC | 1 cut(s) | 744 |
| BmsI | GCATC | 4 cut(s) | 214, 601, 607, 677 |
| BpiI | GAAGAC | 1 cut(s) | 47 |
| BpuEI | CTTGAG | 2 cut(s) | 60, 396 |
| Bsa29I | ATCGAT | 1 cut(s) | 453 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 562 |
| Bse1I | ACTGG | 1 cut(s) | 342 |
| BseCI | ATCGAT | 1 cut(s) | 453 |
| BseGI | GGATG | 3 cut(s) | 243, 298, 692 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 562 |
| BseMII | CTCAG | 1 cut(s) | 205 |
| BseNI | ACTGG | 1 cut(s) | 342 |
| BseXI | GCAGC | 1 cut(s) | 582 |
| BsgI | GTGCAG | 1 cut(s) | 692 |
| BshFI | GGCC | 1 cut(s) | 722 |
| BshVI | ATCGAT | 1 cut(s) | 453 |
| BslFI | GGGAC | 2 cut(s) | 571, 756 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 562 |
| BsmAI | GTCTC | 1 cut(s) | 78 |
| BsmFI | GGGAC | 2 cut(s) | 571, 756 |
| BsmI | GAATGC | 1 cut(s) | 187 |
| BsnI | GGCC | 1 cut(s) | 722 |
| Bsp143I | GATC | 1 cut(s) | 535 |
| BspANI | GGCC | 1 cut(s) | 722 |
| BspCNI | CTCAG | 1 cut(s) | 204 |
| BspDI | ATCGAT | 1 cut(s) | 453 |
| BspLI | GGNNCC | 1 cut(s) | 744 |
| BspTI | CTTAAG | 1 cut(s) | 730 |
| BsrI | ACTGG | 1 cut(s) | 342 |
| BssMI | GATC | 1 cut(s) | 535 |
| BssNAI | GTATAC | 1 cut(s) | 401 |
| Bst1107I | GTATAC | 1 cut(s) | 401 |
| Bst4CI | ACNGT | 2 cut(s) | 198, 289 |
| BstAFI | CTTAAG | 1 cut(s) | 730 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 679 |
| BstDEI | CTNAG | 1 cut(s) | 191 |
| BstF5I | GGATG | 3 cut(s) | 243, 298, 692 |
| BstKTI | GATC | 1 cut(s) | 538 |
| BstMAI | GTCTC | 1 cut(s) | 78 |
| BstMBI | GATC | 1 cut(s) | 535 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 679, 719 |
| BstV1I | GCAGC | 1 cut(s) | 582 |
| BstV2I | GAAGAC | 1 cut(s) | 47 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 140 |
| BstZ17I | GTATAC | 1 cut(s) | 401 |
| Bsu15I | ATCGAT | 1 cut(s) | 453 |
| BsuRI | GGCC | 1 cut(s) | 722 |
| BsuTUI | ATCGAT | 1 cut(s) | 453 |
| BtsCI | GGATG | 3 cut(s) | 243, 298, 692 |
| BtsI | GCAGTG | 1 cut(s) | 552 |
| BtsIMutI | CAGTG | 2 cut(s) | 349, 552 |
| CaiI | CAGNNNCTG | 1 cut(s) | 713 |
| Cfr13I | GGNCC | 1 cut(s) | 743 |
| ClaI | ATCGAT | 1 cut(s) | 453 |
| Csp6I | GTAC | 2 cut(s) | 285, 735 |
| CviAII | CATG | 1 cut(s) | 114 |
| CviQI | GTAC | 2 cut(s) | 285, 735 |
| DdeI | CTNAG | 1 cut(s) | 191 |
| DpnI | GATC | 1 cut(s) | 537 |
| DpnII | GATC | 1 cut(s) | 535 |
| EaeI | YGGCCR | 1 cut(s) | 720 |
| Eco32I | GATATC | 1 cut(s) | 553 |
| Eco47I | GGWCC | 1 cut(s) | 743 |
| EcoO109I | RGGNCCY | 1 cut(s) | 743 |
| EcoRV | GATATC | 1 cut(s) | 553 |
| FaeI | CATG | 1 cut(s) | 117 |
| FaqI | GGGAC | 2 cut(s) | 571, 756 |
| FatI | CATG | 1 cut(s) | 113 |
| FblI | GTMKAC | 1 cut(s) | 400 |
| Fnu4HI | GCNGC | 1 cut(s) | 596 |
| FokI | GGATG | 3 cut(s) | 250, 305, 699 |
| Fsp4HI | GCNGC | 1 cut(s) | 596 |
| FspBI | CTAG | 3 cut(s) | 366, 422, 738 |
| GluI | GCNGC | 1 cut(s) | 596 |
| HaeIII | GGCC | 1 cut(s) | 722 |
| Hin1II | CATG | 1 cut(s) | 117 |
| HincII | GTYRAC | 1 cut(s) | 487 |
| HindII | GTYRAC | 1 cut(s) | 487 |
| HindIII | AAGCTT | 1 cut(s) | 84 |
| HinfI | GANTC | 5 cut(s) | 246, 313, 325, 352, 571 |
| Hpy166II | GTNNAC | 3 cut(s) | 401, 487, 641 |
| Hpy188I | TCNGA | 2 cut(s) | 194, 391 |
| Hpy188III | TCNNGA | 6 cut(s) | 29, 77, 265, 422, 443, 539 |
| Hpy8I | GTNNAC | 3 cut(s) | 401, 487, 641 |
| HpyAV | CCTTC | 2 cut(s) | 459, 670 |
| HpyCH4III | ACNGT | 2 cut(s) | 198, 289 |
| HpyCH4V | TGCA | 6 cut(s) | 61, 185, 533, 598, 614, 673 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 679, 719 |
| HpyF3I | CTNAG | 1 cut(s) | 191 |
| Hsp92II | CATG | 1 cut(s) | 117 |
| Kzo9I | GATC | 1 cut(s) | 535 |
| LmnI | GCTCC | 1 cut(s) | 241 |
| LpnPI | CCDG | 7 cut(s) | 33, 107, 126, 267, 355, 428, 569 |
| Lsp1109I | GCAGC | 1 cut(s) | 582 |
| LweI | GCATC | 4 cut(s) | 214, 601, 607, 677 |
| MaeI | CTAG | 3 cut(s) | 366, 422, 738 |
| MaeIII | GTNAC | 3 cut(s) | 109, 117, 337 |
| MalI | GATC | 1 cut(s) | 537 |
| MboI | GATC | 1 cut(s) | 535 |
| MboII | GAAGA | 5 cut(s) | 49, 52, 92, 190, 280 |
| MlsI | TGGCCA | 1 cut(s) | 722 |
| MluCI | AATT | 5 cut(s) | 64, 136, 438, 504, 629 |
| MluNI | TGGCCA | 1 cut(s) | 722 |
| MlyI | GAGTC | 1 cut(s) | 307 |
| Mox20I | TGGCCA | 1 cut(s) | 722 |
| MroXI | GAANNNNTTC | 3 cut(s) | 250, 272, 469 |
| MscI | TGGCCA | 1 cut(s) | 722 |
| MseI | TTAA | 4 cut(s) | 14, 372, 567, 731 |
| MslI | CAYNNNNRTG | 2 cut(s) | 455, 606 |
| Msp20I | TGGCCA | 1 cut(s) | 722 |
| MspCI | CTTAAG | 1 cut(s) | 730 |
| Mva1269I | GAATGC | 1 cut(s) | 187 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 679, 719 |
| NdeII | GATC | 1 cut(s) | 535 |
| NlaIII | CATG | 1 cut(s) | 117 |
| NlaIV | GGNNCC | 1 cut(s) | 744 |
| PctI | GAATGC | 1 cut(s) | 187 |
| PdmI | GAANNNNTTC | 3 cut(s) | 250, 272, 469 |
| PfeI | GAWTC | 4 cut(s) | 246, 325, 352, 571 |
| PkrI | GCNGC | 1 cut(s) | 597 |
| PleI | GAGTC | 1 cut(s) | 307 |
| PpsI | GAGTC | 1 cut(s) | 307 |
| PpuMI | RGGWCCY | 1 cut(s) | 743 |
| Psp5II | RGGWCCY | 1 cut(s) | 743 |
| PspN4I | GGNNCC | 1 cut(s) | 744 |
| PspPI | GGNCC | 1 cut(s) | 743 |
| PspPPI | RGGWCCY | 1 cut(s) | 743 |
| PstNI | CAGNNNCTG | 1 cut(s) | 713 |
| RsaI | GTAC | 2 cut(s) | 286, 736 |
| RsaNI | GTAC | 2 cut(s) | 285, 735 |
| RseI | CAYNNNNRTG | 2 cut(s) | 455, 606 |
| SaqAI | TTAA | 4 cut(s) | 14, 372, 567, 731 |
| SatI | GCNGC | 1 cut(s) | 596 |
| Sau3AI | GATC | 1 cut(s) | 535 |
| Sau96I | GGNCC | 1 cut(s) | 743 |
| ScaI | AGTACT | 1 cut(s) | 736 |
| SchI | GAGTC | 1 cut(s) | 307 |
| SfaNI | GCATC | 4 cut(s) | 214, 601, 607, 677 |
| SinI | GGWCC | 1 cut(s) | 743 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 455, 606 |
| SmlI | CTYRAG | 3 cut(s) | 75, 411, 730 |
| SmoI | CTYRAG | 3 cut(s) | 75, 411, 730 |
| Sse9I | AATT | 5 cut(s) | 64, 136, 438, 504, 629 |
| SspI | AATATT | 1 cut(s) | 661 |
| SspMI | CTAG | 3 cut(s) | 366, 422, 738 |
| TaaI | ACNGT | 2 cut(s) | 198, 289 |
| TaqI | TCGA | 3 cut(s) | 154, 266, 453 |
| TasI | AATT | 5 cut(s) | 64, 136, 438, 504, 629 |
| TatI | WGTACW | 1 cut(s) | 734 |
| TfiI | GAWTC | 4 cut(s) | 246, 325, 352, 571 |
| Tru1I | TTAA | 4 cut(s) | 14, 372, 567, 731 |
| Tru9I | TTAA | 4 cut(s) | 14, 372, 567, 731 |
| TscAI | CASTG | 2 cut(s) | 349, 552 |
| TseI | GCWGC | 1 cut(s) | 595 |
| TspDTI | ATGAA | 5 cut(s) | 17, 21, 140, 243, 265 |
| TspGWI | ACGGA | 1 cut(s) | 573 |
| TspRI | CASTG | 2 cut(s) | 349, 552 |
| Vha464I | CTTAAG | 1 cut(s) | 730 |
| VpaK11BI | GGWCC | 1 cut(s) | 743 |
| XapI | RAATTY | 2 cut(s) | 64, 438 |
| XbaI | TCTAGA | 1 cut(s) | 421 |
| XmiI | GTMKAC | 1 cut(s) | 400 |
| XmnI | GAANNNNTTC | 3 cut(s) | 250, 272, 469 |
| XspI | CTAG | 3 cut(s) | 366, 422, 738 |
| ZrmI | AGTACT | 1 cut(s) | 736 |