ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 5 - 210 | 5.8e-13 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 1181 |
| AciI | CCGC | 2 cut(s) | 558, 624 |
| AclWI | GGATC | 2 cut(s) | 670, 1225 |
| AcsI | RAATTY | 2 cut(s) | 300, 462 |
| AdeI | CACNNNGTG | 1 cut(s) | 555 |
| AfaI | GTAC | 4 cut(s) | 43, 358, 817, 951 |
| AfeI | AGCGCT | 1 cut(s) | 350 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 442, 592, 656 |
| AflIII | ACRYGT | 1 cut(s) | 359 |
| AgeI | ACCGGT | 1 cut(s) | 317 |
| AgsI | TTSAA | 4 cut(s) | 305, 424, 710, 1097 |
| AjiI | CACGTC | 1 cut(s) | 271 |
| AjnI | CCWGG | 3 cut(s) | 792, 963, 1019 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 131, 163 |
| AluBI | AGCT | 5 cut(s) | 488, 765, 878, 904, 1067 |
| AluI | AGCT | 5 cut(s) | 488, 765, 878, 904, 1067 |
| Alw26I | GTCTC | 2 cut(s) | 101, 304 |
| AlwI | GGATC | 2 cut(s) | 670, 1225 |
| Aor51HI | AGCGCT | 1 cut(s) | 350 |
| AoxI | GGCC | 3 cut(s) | 202, 781, 865 |
| ApeKI | GCWGC | 2 cut(s) | 626, 901 |
| ApoI | RAATTY | 2 cut(s) | 300, 462 |
| AsiGI | ACCGGT | 1 cut(s) | 317 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 651 |
| AspLEI | GCGC | 6 cut(s) | 63, 147, 351, 544, 631, 1276 |
| AspS9I | GGNCC | 1 cut(s) | 782 |
| AsuC2I | CCSGG | 1 cut(s) | 494 |
| AsuHPI | GGTGA | 2 cut(s) | 421, 895 |
| BbsI | GAAGAC | 2 cut(s) | 88, 905 |
| BbvI | GCAGC | 2 cut(s) | 638, 913 |
| BccI | CCATC | 3 cut(s) | 218, 284, 1109 |
| BciT130I | CCWGG | 3 cut(s) | 794, 965, 1021 |
| BcnI | CCSGG | 1 cut(s) | 494 |
| BcoDI | GTCTC | 2 cut(s) | 101, 304 |
| BfaI | CTAG | 4 cut(s) | 11, 527, 819, 891 |
| BfmI | CTRYAG | 2 cut(s) | 508, 1194 |
| BfoI | RGCGCY | 2 cut(s) | 352, 632 |
| BisI | GCNGC | 2 cut(s) | 627, 902 |
| BlsI | GCNGC | 2 cut(s) | 628, 903 |
| BmcAI | AGTACT | 2 cut(s) | 43, 817 |
| Bme1390I | CCNGG | 4 cut(s) | 494, 794, 965, 1021 |
| BmgBI | CACGTC | 1 cut(s) | 271 |
| BmgT120I | GGNCC | 1 cut(s) | 782 |
| BmiI | GGNNCC | 1 cut(s) | 648 |
| BmrFI | CCNGG | 4 cut(s) | 494, 794, 965, 1021 |
| BmsI | GCATC | 5 cut(s) | 39, 293, 471, 487, 611 |
| BoxI | GACNNNNGTC | 1 cut(s) | 113 |
| BpiI | GAAGAC | 2 cut(s) | 88, 905 |
| BpmI | CTGGAG | 2 cut(s) | 219, 986 |
| BpuMI | CCSGG | 1 cut(s) | 494 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1035 |
| BsaJI | CCNNGG | 1 cut(s) | 401 |
| BsaWI | WCCGGW | 1 cut(s) | 317 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1154, 1184 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 442, 592, 656 |
| Bse118I | RCCGGY | 1 cut(s) | 317 |
| Bse1I | ACTGG | 2 cut(s) | 722, 1001 |
| Bse3DI | GCAATG | 1 cut(s) | 391 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1035 |
| BseBI | CCWGG | 3 cut(s) | 794, 965, 1021 |
| BseDI | CCNNGG | 1 cut(s) | 401 |
| BseGI | GGATG | 2 cut(s) | 331, 502 |
| BseJI | GATNNNNATC | 1 cut(s) | 1035 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 442, 592, 656 |
| BseMI | GCAATG | 1 cut(s) | 391 |
| BseMII | CTCAG | 3 cut(s) | 115, 432, 972 |
| BseNI | ACTGG | 2 cut(s) | 722, 1001 |
| BseRI | GAGGAG | 2 cut(s) | 458, 1162 |
| BseXI | GCAGC | 2 cut(s) | 638, 913 |
| BseYI | CCCAGC | 1 cut(s) | 878 |
| BsgI | GTGCAG | 3 cut(s) | 71, 207, 582 |
| BshFI | GGCC | 3 cut(s) | 204, 783, 867 |
| BshTI | ACCGGT | 1 cut(s) | 317 |
| BsiSI | CCGG | 2 cut(s) | 318, 494 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 442, 592, 656 |
| BsmAI | GTCTC | 2 cut(s) | 101, 304 |
| BsmI | GAATGC | 2 cut(s) | 89, 1264 |
| BsnI | GGCC | 3 cut(s) | 204, 783, 867 |
| Bsp143I | GATC | 5 cut(s) | 411, 523, 662, 1036, 1230 |
| BspACI | CCGC | 2 cut(s) | 558, 624 |
| BspANI | GGCC | 3 cut(s) | 204, 783, 867 |
| BspCNI | CTCAG | 3 cut(s) | 114, 433, 973 |
| BspHI | TCATGA | 1 cut(s) | 727 |
| BspLI | GGNNCC | 1 cut(s) | 648 |
| BspPI | GGATC | 2 cut(s) | 670, 1225 |
| BspQI | GCTCTTC | 1 cut(s) | 1072 |
| BsrDI | GCAATG | 1 cut(s) | 391 |
| BsrFI | RCCGGY | 1 cut(s) | 317 |
| BsrI | ACTGG | 2 cut(s) | 722, 1001 |
| BssAI | RCCGGY | 1 cut(s) | 317 |
| BssECI | CCNNGG | 1 cut(s) | 401 |
| BssMI | GATC | 5 cut(s) | 411, 523, 662, 1036, 1230 |
| BssNAI | GTATAC | 1 cut(s) | 1182 |
| BssT1I | CCWWGG | 1 cut(s) | 401 |
| Bst1107I | GTATAC | 1 cut(s) | 1182 |
| Bst2UI | CCWGG | 3 cut(s) | 794, 965, 1021 |
| Bst4CI | ACNGT | 3 cut(s) | 170, 587, 954 |
| Bst6I | CTCTTC | 5 cut(s) | 218, 726, 729, 735, 1072 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 58, 142 |
| BstC8I | GCNNGC | 2 cut(s) | 54, 486 |
| BstDEI | CTNAG | 4 cut(s) | 101, 441, 981, 1134 |
| BstF5I | GGATG | 2 cut(s) | 331, 502 |
| BstH2I | RGCGCY | 2 cut(s) | 352, 632 |
| BstHHI | GCGC | 6 cut(s) | 63, 147, 351, 544, 631, 1276 |
| BstKTI | GATC | 5 cut(s) | 414, 526, 665, 1039, 1233 |
| BstMAI | GTCTC | 2 cut(s) | 101, 304 |
| BstMBI | GATC | 5 cut(s) | 411, 523, 662, 1036, 1230 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 53, 58, 142 |
| BstNI | CCWGG | 3 cut(s) | 794, 965, 1021 |
| BstNSI | RCATGY | 2 cut(s) | 363, 992 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 113 |
| BstSCI | CCNGG | 4 cut(s) | 492, 792, 963, 1019 |
| BstSFI | CTRYAG | 2 cut(s) | 508, 1194 |
| BstV1I | GCAGC | 2 cut(s) | 638, 913 |
| BstV2I | GAAGAC | 2 cut(s) | 88, 905 |
| BstZ17I | GTATAC | 1 cut(s) | 1182 |
| BsuRI | GGCC | 3 cut(s) | 204, 783, 867 |
| BtrI | CACGTC | 1 cut(s) | 271 |
| BtsCI | GGATG | 2 cut(s) | 331, 502 |
| BtsIMutI | CAGTG | 2 cut(s) | 109, 1224 |
| Cac8I | GCNNGC | 2 cut(s) | 54, 486 |
| CciI | TCATGA | 1 cut(s) | 727 |
| CfoI | GCGC | 6 cut(s) | 63, 147, 351, 544, 631, 1276 |
| Cfr10I | RCCGGY | 1 cut(s) | 317 |
| Cfr13I | GGNCC | 1 cut(s) | 782 |
| CseI | GACGC | 1 cut(s) | 362 |
| CsiI | ACCWGGT | 1 cut(s) | 1019 |
| Csp6I | GTAC | 4 cut(s) | 42, 357, 816, 950 |
| CspAI | ACCGGT | 1 cut(s) | 317 |
| CviAII | CATG | 9 cut(s) | 15, 119, 360, 656, 728, 869, 989, 1144, 1177 |
| CviQI | GTAC | 4 cut(s) | 42, 357, 816, 950 |
| DdeI | CTNAG | 4 cut(s) | 101, 441, 981, 1134 |
| DpnI | GATC | 5 cut(s) | 413, 525, 664, 1038, 1232 |
| DpnII | GATC | 5 cut(s) | 411, 523, 662, 1036, 1230 |
| DraIII | CACNNNGTG | 1 cut(s) | 555 |
| Eam1104I | CTCTTC | 5 cut(s) | 218, 726, 729, 735, 1072 |
| EarI | CTCTTC | 5 cut(s) | 218, 726, 729, 735, 1072 |
| Eco130I | CCWWGG | 1 cut(s) | 401 |
| Eco147I | AGGCCT | 1 cut(s) | 204 |
| Eco47III | AGCGCT | 1 cut(s) | 350 |
| EcoRI | GAATTC | 2 cut(s) | 300, 462 |
| EcoRII | CCWGG | 3 cut(s) | 792, 963, 1019 |
| EcoT14I | CCWWGG | 1 cut(s) | 401 |
| ErhI | CCWWGG | 1 cut(s) | 401 |
| FaeI | CATG | 9 cut(s) | 18, 122, 363, 659, 731, 872, 992, 1147, 1180 |
| FatI | CATG | 9 cut(s) | 14, 118, 359, 655, 727, 868, 988, 1143, 1176 |
| FauI | CCCGC | 1 cut(s) | 631 |
| FauNDI | CATATG | 1 cut(s) | 1209 |
| FblI | GTMKAC | 1 cut(s) | 1181 |
| Fnu4HI | GCNGC | 2 cut(s) | 627, 902 |
| FokI | GGATG | 2 cut(s) | 318, 509 |
| Fsp4HI | GCNGC | 2 cut(s) | 627, 902 |
| FspBI | CTAG | 4 cut(s) | 11, 527, 819, 891 |
| GlaI | GCGC | 6 cut(s) | 62, 146, 350, 543, 630, 1275 |
| GluI | GCNGC | 2 cut(s) | 627, 902 |
| GsaI | CCCAGC | 1 cut(s) | 882 |
| GsuI | CTGGAG | 2 cut(s) | 219, 986 |
| HaeII | RGCGCY | 2 cut(s) | 352, 632 |
| HaeIII | GGCC | 3 cut(s) | 204, 783, 867 |
| HapII | CCGG | 2 cut(s) | 318, 494 |
| HgaI | GACGC | 1 cut(s) | 362 |
| HhaI | GCGC | 6 cut(s) | 63, 147, 351, 544, 631, 1276 |
| Hin1II | CATG | 9 cut(s) | 18, 122, 363, 659, 731, 872, 992, 1147, 1180 |
| Hin6I | GCGC | 6 cut(s) | 61, 145, 349, 542, 629, 1274 |
| HinP1I | GCGC | 6 cut(s) | 61, 145, 349, 542, 629, 1274 |
| HincII | GTYRAC | 1 cut(s) | 255 |
| HindII | GTYRAC | 1 cut(s) | 255 |
| HindIII | AAGCTT | 2 cut(s) | 486, 1065 |
| HinfI | GANTC | 4 cut(s) | 7, 430, 699, 721 |
| HpaII | CCGG | 2 cut(s) | 318, 494 |
| HphI | GGTGA | 2 cut(s) | 421, 895 |
| Hpy166II | GTNNAC | 3 cut(s) | 255, 549, 1182 |
| Hpy188I | TCNGA | 4 cut(s) | 289, 346, 468, 831 |
| Hpy188III | TCNNGA | 6 cut(s) | 198, 217, 230, 297, 728, 935 |
| Hpy8I | GTNNAC | 3 cut(s) | 255, 549, 1182 |
| HpyAV | CCTTC | 4 cut(s) | 442, 467, 745, 1133 |
| HpyCH4III | ACNGT | 3 cut(s) | 170, 587, 954 |
| HpyCH4IV | ACGT | 2 cut(s) | 270, 923 |
| HpyCH4V | TGCA | 9 cut(s) | 52, 136, 188, 209, 484, 563, 602, 1213, 1262 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 53, 58, 142 |
| HpyF3I | CTNAG | 4 cut(s) | 101, 441, 981, 1134 |
| HpySE526I | ACGT | 2 cut(s) | 270, 923 |
| Hsp92II | CATG | 9 cut(s) | 18, 122, 363, 659, 731, 872, 992, 1147, 1180 |
| HspAI | GCGC | 6 cut(s) | 61, 145, 349, 542, 629, 1274 |
| Kzo9I | GATC | 5 cut(s) | 411, 523, 662, 1036, 1230 |
| LguI | GCTCTTC | 1 cut(s) | 1072 |
| LmnI | GCTCC | 3 cut(s) | 346, 762, 967 |
| Lsp1109I | GCAGC | 2 cut(s) | 638, 913 |
| LweI | GCATC | 5 cut(s) | 39, 293, 471, 487, 611 |
| MabI | ACCWGGT | 1 cut(s) | 1019 |
| MaeI | CTAG | 4 cut(s) | 11, 527, 819, 891 |
| MaeII | ACGT | 2 cut(s) | 270, 923 |
| MaeIII | GTNAC | 6 cut(s) | 638, 713, 847, 1015, 1040, 1243 |
| MalI | GATC | 5 cut(s) | 413, 525, 664, 1038, 1232 |
| MboI | GATC | 5 cut(s) | 411, 523, 662, 1036, 1230 |
| MboII | GAAGA | 7 cut(s) | 88, 205, 716, 743, 752, 905, 1089 |
| MfeI | CAATTG | 1 cut(s) | 377 |
| MluCI | AATT | 5 cut(s) | 19, 300, 377, 462, 807 |
| MlyI | GAGTC | 1 cut(s) | 715 |
| MmeI | TCCRAC | 3 cut(s) | 740, 1140, 1258 |
| MroXI | GAANNNNTTC | 1 cut(s) | 651 |
| MseI | TTAA | 1 cut(s) | 165 |
| MspI | CCGG | 2 cut(s) | 318, 494 |
| MspR9I | CCNGG | 4 cut(s) | 494, 794, 965, 1021 |
| MunI | CAATTG | 1 cut(s) | 377 |
| Mva1269I | GAATGC | 2 cut(s) | 89, 1264 |
| MvaI | CCWGG | 3 cut(s) | 794, 965, 1021 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 53, 58, 142 |
| NciI | CCSGG | 1 cut(s) | 494 |
| NdeI | CATATG | 1 cut(s) | 1209 |
| NdeII | GATC | 5 cut(s) | 411, 523, 662, 1036, 1230 |
| NlaIII | CATG | 9 cut(s) | 18, 122, 363, 659, 731, 872, 992, 1147, 1180 |
| NlaIV | GGNNCC | 1 cut(s) | 648 |
| NmuCI | GTSAC | 2 cut(s) | 638, 1243 |
| NspI | RCATGY | 2 cut(s) | 363, 992 |
| PagI | TCATGA | 1 cut(s) | 727 |
| PceI | AGGCCT | 1 cut(s) | 204 |
| PciI | ACATGT | 1 cut(s) | 359 |
| PciSI | GCTCTTC | 1 cut(s) | 1072 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 967 |
| PctI | GAATGC | 2 cut(s) | 89, 1264 |
| PdmI | GAANNNNTTC | 1 cut(s) | 651 |
| PfeI | GAWTC | 3 cut(s) | 7, 430, 699 |
| PfoI | TCCNGGA | 1 cut(s) | 492 |
| PinAI | ACCGGT | 1 cut(s) | 317 |
| PkrI | GCNGC | 2 cut(s) | 628, 903 |
| PleI | GAGTC | 1 cut(s) | 715 |
| PpsI | GAGTC | 1 cut(s) | 715 |
| PscI | ACATGT | 1 cut(s) | 359 |
| PshAI | GACNNNNGTC | 1 cut(s) | 113 |
| Psp6I | CCWGG | 3 cut(s) | 792, 963, 1019 |
| PspFI | CCCAGC | 1 cut(s) | 878 |
| PspGI | CCWGG | 3 cut(s) | 792, 963, 1019 |
| PspN4I | GGNNCC | 1 cut(s) | 648 |
| PspPI | GGNCC | 1 cut(s) | 782 |
| RsaI | GTAC | 4 cut(s) | 43, 358, 817, 951 |
| RsaNI | GTAC | 4 cut(s) | 42, 357, 816, 950 |
| SapI | GCTCTTC | 1 cut(s) | 1072 |
| SaqAI | TTAA | 1 cut(s) | 165 |
| SatI | GCNGC | 2 cut(s) | 627, 902 |
| Sau3AI | GATC | 5 cut(s) | 411, 523, 662, 1036, 1230 |
| Sau96I | GGNCC | 1 cut(s) | 782 |
| ScaI | AGTACT | 2 cut(s) | 43, 817 |
| SchI | GAGTC | 1 cut(s) | 715 |
| ScrFI | CCNGG | 4 cut(s) | 494, 794, 965, 1021 |
| SexAI | ACCWGGT | 1 cut(s) | 1019 |
| SfaNI | GCATC | 5 cut(s) | 39, 293, 471, 487, 611 |
| SfcI | CTRYAG | 2 cut(s) | 508, 1194 |
| Sse9I | AATT | 5 cut(s) | 19, 300, 377, 462, 807 |
| SseBI | AGGCCT | 1 cut(s) | 204 |
| SsiI | CCGC | 2 cut(s) | 558, 624 |
| SspMI | CTAG | 4 cut(s) | 11, 527, 819, 891 |
| StuI | AGGCCT | 1 cut(s) | 204 |
| StyD4I | CCNGG | 4 cut(s) | 492, 792, 963, 1019 |
| StyI | CCWWGG | 1 cut(s) | 401 |
| TaaI | ACNGT | 3 cut(s) | 170, 587, 954 |
| TaiI | ACGT | 2 cut(s) | 273, 926 |
| TaqI | TCGA | 2 cut(s) | 33, 1010 |
| TasI | AATT | 5 cut(s) | 19, 300, 377, 462, 807 |
| TatI | WGTACW | 3 cut(s) | 41, 815, 949 |
| TfiI | GAWTC | 3 cut(s) | 7, 430, 699 |
| Tru1I | TTAA | 1 cut(s) | 165 |
| Tru9I | TTAA | 1 cut(s) | 165 |
| TscAI | CASTG | 2 cut(s) | 109, 1224 |
| TseFI | GTSAC | 2 cut(s) | 638, 1243 |
| TseI | GCWGC | 2 cut(s) | 626, 901 |
| Tsp45I | GTSAC | 2 cut(s) | 638, 1243 |
| TspDTI | ATGAA | 8 cut(s) | 402, 644, 716, 744, 885, 1046, 1271, 1278 |
| TspRI | CASTG | 2 cut(s) | 109, 1224 |
| XapI | RAATTY | 2 cut(s) | 300, 462 |
| XceI | RCATGY | 2 cut(s) | 363, 992 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 875 |
| XmiI | GTMKAC | 1 cut(s) | 1181 |
| XmnI | GAANNNNTTC | 1 cut(s) | 651 |
| XspI | CTAG | 4 cut(s) | 11, 527, 819, 891 |
| ZrmI | AGTACT | 2 cut(s) | 43, 817 |