ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 152 |
| AciI | CCGC | 3 cut(s) | 291, 487, 785 |
| AclWI | GGATC | 4 cut(s) | 44, 427, 569, 712 |
| AcoI | YGGCCR | 1 cut(s) | 625 |
| AcsI | RAATTY | 1 cut(s) | 12 |
| AcuI | CTGAAG | 1 cut(s) | 330 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 177, 849 |
| AgsI | TTSAA | 4 cut(s) | 67, 427, 733, 740 |
| AjiI | CACGTC | 1 cut(s) | 670 |
| AjnI | CCWGG | 3 cut(s) | 362, 608, 805 |
| AluBI | AGCT | 3 cut(s) | 370, 577, 859 |
| AluI | AGCT | 3 cut(s) | 370, 577, 859 |
| Alw26I | GTCTC | 3 cut(s) | 134, 472, 628 |
| AlwI | GGATC | 4 cut(s) | 44, 427, 569, 712 |
| AoxI | GGCC | 3 cut(s) | 322, 541, 625 |
| ApeKI | GCWGC | 1 cut(s) | 367 |
| ApoI | RAATTY | 1 cut(s) | 12 |
| AspA2I | CCTAGG | 1 cut(s) | 529 |
| AspS9I | GGNCC | 2 cut(s) | 461, 542 |
| AsuC2I | CCSGG | 1 cut(s) | 340 |
| AsuHPI | GGTGA | 1 cut(s) | 804 |
| AvaII | GGWCC | 1 cut(s) | 461 |
| AvrII | CCTAGG | 1 cut(s) | 529 |
| AxyI | CCTNAGG | 1 cut(s) | 160 |
| BalI | TGGCCA | 1 cut(s) | 627 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 561, 593 |
| BbvI | GCAGC | 1 cut(s) | 379 |
| BccI | CCATC | 2 cut(s) | 188, 729 |
| BciT130I | CCWGG | 3 cut(s) | 364, 610, 807 |
| BcnI | CCSGG | 1 cut(s) | 340 |
| BcoDI | GTCTC | 3 cut(s) | 134, 472, 628 |
| BfaI | CTAG | 6 cut(s) | 468, 506, 530, 584, 654, 860 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 330 |
| BisI | GCNGC | 2 cut(s) | 368, 786 |
| BlnI | CCTAGG | 1 cut(s) | 529 |
| BlsI | GCNGC | 2 cut(s) | 369, 787 |
| Bme1390I | CCNGG | 4 cut(s) | 340, 364, 610, 807 |
| Bme18I | GGWCC | 1 cut(s) | 461 |
| BmgBI | CACGTC | 1 cut(s) | 670 |
| BmgT120I | GGNCC | 2 cut(s) | 461, 542 |
| BmrFI | CCNGG | 4 cut(s) | 340, 364, 610, 807 |
| BmsI | GCATC | 3 cut(s) | 385, 490, 884 |
| BpmI | CTGGAG | 1 cut(s) | 331 |
| BpuEI | CTTGAG | 2 cut(s) | 78, 208 |
| BpuMI | CCSGG | 1 cut(s) | 340 |
| BsaBI | GATNNNNATC | 1 cut(s) | 663 |
| BsaJI | CCNNGG | 2 cut(s) | 404, 529 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 177, 849 |
| Bse1I | ACTGG | 3 cut(s) | 314, 325, 752 |
| Bse21I | CCTNAGG | 1 cut(s) | 160 |
| Bse3DI | GCAATG | 1 cut(s) | 49 |
| Bse8I | GATNNNNATC | 1 cut(s) | 663 |
| BseBI | CCWGG | 3 cut(s) | 364, 610, 807 |
| BseDI | CCNNGG | 2 cut(s) | 404, 529 |
| BseGI | GGATG | 1 cut(s) | 400 |
| BseJI | GATNNNNATC | 1 cut(s) | 663 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 177, 849 |
| BseMI | GCAATG | 1 cut(s) | 49 |
| BseMII | CTCAG | 1 cut(s) | 95 |
| BseNI | ACTGG | 3 cut(s) | 314, 325, 752 |
| BseXI | GCAGC | 1 cut(s) | 379 |
| BseYI | CCCAGC | 2 cut(s) | 203, 573 |
| BsgI | GTGCAG | 1 cut(s) | 257 |
| BshFI | GGCC | 3 cut(s) | 324, 543, 627 |
| BsiSI | CCGG | 1 cut(s) | 340 |
| BslFI | GGGAC | 1 cut(s) | 656 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 177, 849 |
| BsmAI | GTCTC | 3 cut(s) | 134, 472, 628 |
| BsmBI | CGTCTC | 1 cut(s) | 134 |
| BsmFI | GGGAC | 1 cut(s) | 656 |
| BsnI | GGCC | 3 cut(s) | 324, 543, 627 |
| Bsp143I | GATC | 6 cut(s) | 36, 355, 432, 561, 664, 717 |
| Bsp19I | CCATGG | 1 cut(s) | 404 |
| BspACI | CCGC | 3 cut(s) | 291, 487, 785 |
| BspANI | GGCC | 3 cut(s) | 324, 543, 627 |
| BspCNI | CTCAG | 1 cut(s) | 94 |
| BspHI | TCATGA | 1 cut(s) | 685 |
| BspPI | GGATC | 4 cut(s) | 44, 427, 569, 712 |
| BsrDI | GCAATG | 1 cut(s) | 49 |
| BsrI | ACTGG | 3 cut(s) | 314, 325, 752 |
| BssECI | CCNNGG | 2 cut(s) | 404, 529 |
| BssMI | GATC | 6 cut(s) | 36, 355, 432, 561, 664, 717 |
| BssT1I | CCWWGG | 2 cut(s) | 404, 529 |
| Bst2UI | CCWGG | 3 cut(s) | 364, 610, 807 |
| Bst4CI | ACNGT | 3 cut(s) | 89, 461, 697 |
| BstC8I | GCNNGC | 1 cut(s) | 201 |
| BstDEI | CTNAG | 4 cut(s) | 17, 81, 160, 708 |
| BstDSI | CCRYGG | 1 cut(s) | 404 |
| BstEII | GGTNACC | 1 cut(s) | 568 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 847 |
| BstF5I | GGATG | 1 cut(s) | 400 |
| BstKTI | GATC | 6 cut(s) | 39, 358, 435, 564, 667, 720 |
| BstMAI | GTCTC | 3 cut(s) | 134, 472, 628 |
| BstMBI | GATC | 6 cut(s) | 36, 355, 432, 561, 664, 717 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 297, 330, 791 |
| BstNI | CCWGG | 3 cut(s) | 364, 610, 807 |
| BstPI | GGTNACC | 1 cut(s) | 568 |
| BstSCI | CCNGG | 4 cut(s) | 338, 362, 608, 805 |
| BstV1I | GCAGC | 1 cut(s) | 379 |
| BstX2I | RGATCY | 3 cut(s) | 36, 432, 561 |
| BstYI | RGATCY | 3 cut(s) | 36, 432, 561 |
| Bsu36I | CCTNAGG | 1 cut(s) | 160 |
| BsuRI | GGCC | 3 cut(s) | 324, 543, 627 |
| BtgI | CCRYGG | 1 cut(s) | 404 |
| BtrI | CACGTC | 1 cut(s) | 670 |
| BtsCI | GGATG | 1 cut(s) | 400 |
| BtsI | GCAGTG | 1 cut(s) | 398 |
| BtsIMutI | CAGTG | 3 cut(s) | 115, 307, 398 |
| Cac8I | GCNNGC | 1 cut(s) | 201 |
| CciI | TCATGA | 1 cut(s) | 685 |
| Cfr13I | GGNCC | 2 cut(s) | 461, 542 |
| CpoI | CGGWCCG | 1 cut(s) | 461 |
| CspI | CGGWCCG | 1 cut(s) | 461 |
| CviAII | CATG | 9 cut(s) | 377, 405, 539, 555, 629, 686, 789, 817, 824 |
| DdeI | CTNAG | 4 cut(s) | 17, 81, 160, 708 |
| DpnI | GATC | 6 cut(s) | 38, 357, 434, 563, 666, 719 |
| DpnII | GATC | 6 cut(s) | 36, 355, 432, 561, 664, 717 |
| EaeI | YGGCCR | 1 cut(s) | 625 |
| Eco130I | CCWWGG | 2 cut(s) | 404, 529 |
| Eco32I | GATATC | 1 cut(s) | 619 |
| Eco47I | GGWCC | 1 cut(s) | 461 |
| Eco57I | CTGAAG | 1 cut(s) | 330 |
| Eco81I | CCTNAGG | 1 cut(s) | 160 |
| Eco91I | GGTNACC | 1 cut(s) | 568 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 847 |
| EcoO65I | GGTNACC | 1 cut(s) | 568 |
| EcoRII | CCWGG | 3 cut(s) | 362, 608, 805 |
| EcoRV | GATATC | 1 cut(s) | 619 |
| EcoT14I | CCWWGG | 2 cut(s) | 404, 529 |
| ErhI | CCWWGG | 2 cut(s) | 404, 529 |
| Esp3I | CGTCTC | 1 cut(s) | 134 |
| FaeI | CATG | 9 cut(s) | 380, 408, 542, 558, 632, 689, 792, 820, 827 |
| FaqI | GGGAC | 1 cut(s) | 656 |
| FatI | CATG | 9 cut(s) | 376, 404, 538, 554, 628, 685, 788, 816, 823 |
| FauI | CCCGC | 1 cut(s) | 480 |
| FauNDI | CATATG | 1 cut(s) | 270 |
| FblI | GTMKAC | 1 cut(s) | 152 |
| Fnu4HI | GCNGC | 2 cut(s) | 368, 786 |
| FokI | GGATG | 1 cut(s) | 407 |
| Fsp4HI | GCNGC | 2 cut(s) | 368, 786 |
| FspBI | CTAG | 6 cut(s) | 468, 506, 530, 584, 654, 860 |
| GluI | GCNGC | 2 cut(s) | 368, 786 |
| GsaI | CCCAGC | 2 cut(s) | 207, 577 |
| GsuI | CTGGAG | 1 cut(s) | 331 |
| HaeIII | GGCC | 3 cut(s) | 324, 543, 627 |
| HapII | CCGG | 1 cut(s) | 340 |
| Hin1II | CATG | 9 cut(s) | 380, 408, 542, 558, 632, 689, 792, 820, 827 |
| HinfI | GANTC | 3 cut(s) | 659, 729, 740 |
| HpaII | CCGG | 1 cut(s) | 340 |
| HphI | GGTGA | 1 cut(s) | 804 |
| Hpy166II | GTNNAC | 2 cut(s) | 153, 812 |
| Hpy188I | TCNGA | 5 cut(s) | 84, 136, 349, 465, 664 |
| Hpy188III | TCNNGA | 3 cut(s) | 497, 584, 686 |
| Hpy8I | GTNNAC | 2 cut(s) | 153, 812 |
| HpyAV | CCTTC | 2 cut(s) | 615, 775 |
| HpyCH4III | ACNGT | 3 cut(s) | 89, 461, 697 |
| HpyCH4IV | ACGT | 1 cut(s) | 669 |
| HpyCH4V | TGCA | 6 cut(s) | 42, 238, 398, 600, 754, 891 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 297, 330, 791 |
| HpyF3I | CTNAG | 4 cut(s) | 17, 81, 160, 708 |
| HpySE526I | ACGT | 1 cut(s) | 669 |
| Hsp92II | CATG | 9 cut(s) | 380, 408, 542, 558, 632, 689, 792, 820, 827 |
| Kzo9I | GATC | 6 cut(s) | 36, 355, 432, 561, 664, 717 |
| Lsp1109I | GCAGC | 1 cut(s) | 379 |
| LweI | GCATC | 3 cut(s) | 385, 490, 884 |
| MaeI | CTAG | 6 cut(s) | 468, 506, 530, 584, 654, 860 |
| MaeII | ACGT | 1 cut(s) | 669 |
| MaeIII | GTNAC | 4 cut(s) | 227, 372, 568, 826 |
| MalI | GATC | 6 cut(s) | 38, 357, 434, 563, 666, 719 |
| MboI | GATC | 6 cut(s) | 36, 355, 432, 561, 664, 717 |
| MboII | GAAGA | 1 cut(s) | 847 |
| MfeI | CAATTG | 1 cut(s) | 886 |
| MflI | RGATCY | 3 cut(s) | 36, 432, 561 |
| MlsI | TGGCCA | 1 cut(s) | 627 |
| MluCI | AATT | 5 cut(s) | 12, 25, 172, 886, 922 |
| MluNI | TGGCCA | 1 cut(s) | 627 |
| MmeI | TCCRAC | 1 cut(s) | 488 |
| MnlI | CCTC | 7 cut(s) | 26, 102, 315, 446, 555, 912, 939 |
| Mox20I | TGGCCA | 1 cut(s) | 627 |
| MscI | TGGCCA | 1 cut(s) | 627 |
| MseI | TTAA | 2 cut(s) | 141, 521 |
| MslI | CAYNNNNRTG | 1 cut(s) | 403 |
| Msp20I | TGGCCA | 1 cut(s) | 627 |
| MspA1I | CMGCKG | 2 cut(s) | 291, 370 |
| MspI | CCGG | 1 cut(s) | 340 |
| MspR9I | CCNGG | 4 cut(s) | 340, 364, 610, 807 |
| MunI | CAATTG | 1 cut(s) | 886 |
| MvaI | CCWGG | 3 cut(s) | 364, 610, 807 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 297, 330, 791 |
| NciI | CCSGG | 1 cut(s) | 340 |
| NcoI | CCATGG | 1 cut(s) | 404 |
| NdeI | CATATG | 1 cut(s) | 270 |
| NdeII | GATC | 6 cut(s) | 36, 355, 432, 561, 664, 717 |
| NlaIII | CATG | 9 cut(s) | 380, 408, 542, 558, 632, 689, 792, 820, 827 |
| NmuCI | GTSAC | 1 cut(s) | 227 |
| PagI | TCATGA | 1 cut(s) | 685 |
| PfeI | GAWTC | 3 cut(s) | 659, 729, 740 |
| PkrI | GCNGC | 2 cut(s) | 369, 787 |
| Psp6I | CCWGG | 3 cut(s) | 362, 608, 805 |
| PspEI | GGTNACC | 1 cut(s) | 568 |
| PspFI | CCCAGC | 2 cut(s) | 203, 573 |
| PspGI | CCWGG | 3 cut(s) | 362, 608, 805 |
| PspPI | GGNCC | 2 cut(s) | 461, 542 |
| PsuI | RGATCY | 3 cut(s) | 36, 432, 561 |
| PvuII | CAGCTG | 1 cut(s) | 370 |
| RseI | CAYNNNNRTG | 1 cut(s) | 403 |
| Rsr2I | CGGWCCG | 1 cut(s) | 461 |
| RsrII | CGGWCCG | 1 cut(s) | 461 |
| SaqAI | TTAA | 2 cut(s) | 141, 521 |
| SatI | GCNGC | 2 cut(s) | 368, 786 |
| Sau3AI | GATC | 6 cut(s) | 36, 355, 432, 561, 664, 717 |
| Sau96I | GGNCC | 2 cut(s) | 461, 542 |
| ScrFI | CCNGG | 4 cut(s) | 340, 364, 610, 807 |
| SfaNI | GCATC | 3 cut(s) | 385, 490, 884 |
| SinI | GGWCC | 1 cut(s) | 461 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 403 |
| SmlI | CTYRAG | 2 cut(s) | 93, 187 |
| SmoI | CTYRAG | 2 cut(s) | 93, 187 |
| Sse9I | AATT | 5 cut(s) | 12, 25, 172, 886, 922 |
| SsiI | CCGC | 3 cut(s) | 291, 487, 785 |
| SspMI | CTAG | 6 cut(s) | 468, 506, 530, 584, 654, 860 |
| StyD4I | CCNGG | 4 cut(s) | 338, 362, 608, 805 |
| StyI | CCWWGG | 2 cut(s) | 404, 529 |
| TaaI | ACNGT | 3 cut(s) | 89, 461, 697 |
| TaiI | ACGT | 1 cut(s) | 672 |
| TasI | AATT | 5 cut(s) | 12, 25, 172, 886, 922 |
| TauI | GCSGC | 1 cut(s) | 788 |
| TfiI | GAWTC | 3 cut(s) | 659, 729, 740 |
| Tru1I | TTAA | 2 cut(s) | 141, 521 |
| Tru9I | TTAA | 2 cut(s) | 141, 521 |
| TscAI | CASTG | 3 cut(s) | 115, 314, 405 |
| TseFI | GTSAC | 1 cut(s) | 227 |
| TseI | GCWGC | 1 cut(s) | 367 |
| Tsp45I | GTSAC | 1 cut(s) | 227 |
| TspDTI | ATGAA | 5 cut(s) | 94, 271, 527, 674, 812 |
| TspRI | CASTG | 3 cut(s) | 115, 314, 405 |
| VpaK11BI | GGWCC | 1 cut(s) | 461 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 847 |
| XapI | RAATTY | 1 cut(s) | 12 |
| XbaI | TCTAGA | 1 cut(s) | 583 |
| XmaJI | CCTAGG | 1 cut(s) | 529 |
| XmiI | GTMKAC | 1 cut(s) | 152 |
| XspI | CTAG | 6 cut(s) | 468, 506, 530, 584, 654, 860 |