ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 81 - 130 | 9.2e-07 | PPR repeat family |
| PPR | PF01535 | 158 - 184 | 1.8e-06 | PPR repeat |
| PPR_2 | PF13041 | 246 - 278 | 6.1e-06 | PPR repeat family |
| PPR | PF01535 | 249 - 277 | 6.4e-07 | PPR repeat |
| PPR_2 | PF13041 | 279 - 325 | 2.4e-14 | PPR repeat family |
| PPR | PF01535 | 281 - 310 | 2e-10 | PPR repeat |
| PPR_2 | PF13041 | 378 - 426 | 1.3e-08 | PPR repeat family |
| E_motif | PF20431 | 496 - 558 | 6e-16 | E motif |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 56, 611 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1448 |
| AccBSI | CCGCTC | 3 cut(s) | 65, 126, 829 |
| AccI | GTMKAC | 1 cut(s) | 773 |
| AccII | CGCG | 4 cut(s) | 336, 338, 392, 617 |
| AccIII | TCCGGA | 2 cut(s) | 906, 1209 |
| AclWI | GGATC | 1 cut(s) | 1018 |
| AcoI | YGGCCR | 2 cut(s) | 427, 1276 |
| AcsI | RAATTY | 2 cut(s) | 379, 1710 |
| AcuI | CTGAAG | 1 cut(s) | 119 |
| AcyI | GRCGYC | 1 cut(s) | 57 |
| AfaI | GTAC | 1 cut(s) | 866 |
| AfeI | AGCGCT | 1 cut(s) | 1197 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 594, 913, 1086, 1448 |
| AgsI | TTSAA | 7 cut(s) | 259, 410, 1295, 1531, 1673, 1692, 1702 |
| AjiI | CACGTC | 2 cut(s) | 1246, 1388 |
| AjnI | CCWGG | 3 cut(s) | 1345, 1447, 1654 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1294, 1326 |
| AluBI | AGCT | 7 cut(s) | 77, 363, 1399, 1463, 1525, 1651, 1665 |
| AluI | AGCT | 7 cut(s) | 77, 363, 1399, 1463, 1525, 1651, 1665 |
| Alw21I | GWGCWC | 1 cut(s) | 1056 |
| Alw26I | GTCTC | 2 cut(s) | 506, 706 |
| AlwI | GGATC | 1 cut(s) | 1018 |
| Aor13HI | TCCGGA | 2 cut(s) | 906, 1209 |
| Aor51HI | AGCGCT | 1 cut(s) | 1197 |
| AoxI | GGCC | 6 cut(s) | 347, 427, 881, 982, 1276, 1684 |
| ApeKI | GCWGC | 1 cut(s) | 1472 |
| ApoI | RAATTY | 2 cut(s) | 379, 1710 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1526 |
| AspLEI | GCGC | 3 cut(s) | 59, 338, 1198 |
| AspS9I | GGNCC | 5 cut(s) | 88, 348, 421, 982, 1439 |
| AsuC2I | CCSGG | 1 cut(s) | 732 |
| AsuHPI | GGTGA | 2 cut(s) | 16, 217 |
| AvaII | GGWCC | 3 cut(s) | 88, 421, 1439 |
| BaeGI | GKGCMC | 1 cut(s) | 583 |
| BalI | TGGCCA | 1 cut(s) | 1278 |
| BanI | GGYRCC | 2 cut(s) | 56, 611 |
| BbsI | GAAGAC | 2 cut(s) | 214, 290 |
| Bbv12I | GWGCWC | 1 cut(s) | 1056 |
| BbvI | GCAGC | 1 cut(s) | 1484 |
| BccI | CCATC | 5 cut(s) | 42, 275, 304, 1292, 1590 |
| BceAI | ACGGC | 3 cut(s) | 70, 864, 969 |
| BciT130I | CCWGG | 3 cut(s) | 1347, 1449, 1656 |
| BclI | TGATCA | 2 cut(s) | 3, 1240 |
| BcnI | CCSGG | 1 cut(s) | 732 |
| BcoDI | GTCTC | 2 cut(s) | 506, 706 |
| BfaI | CTAG | 1 cut(s) | 708 |
| BfmI | CTRYAG | 2 cut(s) | 358, 1147 |
| BfoI | RGCGCY | 2 cut(s) | 60, 1199 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 272 |
| BglII | AGATCT | 1 cut(s) | 1203 |
| BisI | GCNGC | 6 cut(s) | 60, 63, 390, 430, 615, 1473 |
| BlsI | GCNGC | 6 cut(s) | 61, 64, 391, 431, 616, 1474 |
| Bme1390I | CCNGG | 4 cut(s) | 732, 1347, 1449, 1656 |
| Bme18I | GGWCC | 3 cut(s) | 88, 421, 1439 |
| BmgBI | CACGTC | 2 cut(s) | 1246, 1388 |
| BmgT120I | GGNCC | 5 cut(s) | 88, 348, 421, 982, 1439 |
| BmiI | GGNNCC | 3 cut(s) | 58, 613, 1440 |
| BmrFI | CCNGG | 4 cut(s) | 732, 1347, 1449, 1656 |
| BmsI | GCATC | 4 cut(s) | 717, 928, 1206, 1592 |
| BoxI | GACNNNNGTC | 1 cut(s) | 20 |
| BpiI | GAAGAC | 2 cut(s) | 214, 290 |
| BpmI | CTGGAG | 1 cut(s) | 1470 |
| Bpu10I | CCTNAGC | 2 cut(s) | 151, 825 |
| BpuEI | CTTGAG | 1 cut(s) | 1220 |
| BpuMI | CCSGG | 1 cut(s) | 732 |
| BsaHI | GRCGYC | 1 cut(s) | 57 |
| BsaI | GGTCTC | 2 cut(s) | 506, 706 |
| BsaJI | CCNNGG | 4 cut(s) | 303, 424, 731, 1127 |
| BsaWI | WCCGGW | 3 cut(s) | 463, 906, 1209 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 871, 901 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 594, 913, 1086, 1448 |
| Bse1I | ACTGG | 2 cut(s) | 1068, 1555 |
| Bse3DI | GCAATG | 1 cut(s) | 1632 |
| BseAI | TCCGGA | 2 cut(s) | 906, 1209 |
| BseBI | CCWGG | 3 cut(s) | 1347, 1449, 1656 |
| BseDI | CCNNGG | 4 cut(s) | 303, 424, 731, 1127 |
| BseGI | GGATG | 9 cut(s) | 34, 194, 700, 718, 732, 943, 1141, 1221, 1606 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 594, 913, 1086, 1448 |
| BseMI | GCAATG | 1 cut(s) | 1632 |
| BseMII | CTCAG | 3 cut(s) | 816, 1509, 1533 |
| BseNI | ACTGG | 2 cut(s) | 1068, 1555 |
| BseRI | GAGGAG | 2 cut(s) | 178, 181 |
| BseSI | GKGCMC | 1 cut(s) | 583 |
| BseXI | GCAGC | 1 cut(s) | 1484 |
| BseYI | CCCAGC | 3 cut(s) | 1381, 1391, 1665 |
| BsgI | GTGCAG | 2 cut(s) | 1044, 1371 |
| Bsh1236I | CGCG | 4 cut(s) | 336, 338, 392, 617 |
| BshFI | GGCC | 6 cut(s) | 349, 429, 883, 984, 1278, 1686 |
| BshNI | GGYRCC | 2 cut(s) | 56, 611 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1056 |
| BsiSI | CCGG | 5 cut(s) | 464, 731, 907, 935, 1210 |
| BslFI | GGGAC | 1 cut(s) | 1398 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 594, 913, 1086, 1448 |
| BsmAI | GTCTC | 2 cut(s) | 506, 706 |
| BsmFI | GGGAC | 1 cut(s) | 1398 |
| BsmI | GAATGC | 3 cut(s) | 478, 639, 667 |
| BsnI | GGCC | 6 cut(s) | 349, 429, 883, 984, 1278, 1686 |
| Bso31I | GGTCTC | 2 cut(s) | 506, 706 |
| Bsp1286I | GDGCHC | 2 cut(s) | 583, 1056 |
| Bsp13I | TCCGGA | 2 cut(s) | 906, 1209 |
| Bsp143I | GATC | 8 cut(s) | 3, 960, 991, 1010, 1021, 1203, 1240, 1354 |
| Bsp19I | CCATGG | 1 cut(s) | 424 |
| BspANI | GGCC | 6 cut(s) | 349, 429, 883, 984, 1278, 1686 |
| BspCNI | CTCAG | 3 cut(s) | 817, 1510, 1534 |
| BspEI | TCCGGA | 2 cut(s) | 906, 1209 |
| BspFNI | CGCG | 4 cut(s) | 336, 338, 392, 617 |
| BspLI | GGNNCC | 3 cut(s) | 58, 613, 1440 |
| BspPI | GGATC | 1 cut(s) | 1018 |
| BspQI | GCTCTTC | 1 cut(s) | 1532 |
| BspT107I | GGYRCC | 2 cut(s) | 56, 611 |
| BspTNI | GGTCTC | 2 cut(s) | 506, 706 |
| BsrBI | CCGCTC | 3 cut(s) | 65, 126, 829 |
| BsrDI | GCAATG | 1 cut(s) | 1632 |
| BsrI | ACTGG | 2 cut(s) | 1068, 1555 |
| BssECI | CCNNGG | 4 cut(s) | 303, 424, 731, 1127 |
| BssMI | GATC | 8 cut(s) | 3, 960, 991, 1010, 1021, 1203, 1240, 1354 |
| BssNAI | GTATAC | 1 cut(s) | 774 |
| BssNI | GRCGYC | 1 cut(s) | 57 |
| BssT1I | CCWWGG | 2 cut(s) | 424, 1127 |
| Bst1107I | GTATAC | 1 cut(s) | 774 |
| Bst2UI | CCWGG | 3 cut(s) | 1347, 1449, 1656 |
| Bst4CI | ACNGT | 3 cut(s) | 22, 978, 1151 |
| Bst6I | CTCTTC | 3 cut(s) | 260, 1092, 1532 |
| BstACI | GRCGYC | 1 cut(s) | 57 |
| BstC8I | GCNNGC | 6 cut(s) | 79, 1077, 1221, 1366, 1430, 1470 |
| BstDEI | CTNAG | 4 cut(s) | 151, 825, 1518, 1542 |
| BstDSI | CCRYGG | 1 cut(s) | 424 |
| BstEII | GGTNACC | 1 cut(s) | 22 |
| BstF5I | GGATG | 9 cut(s) | 34, 194, 700, 718, 732, 943, 1141, 1221, 1606 |
| BstFNI | CGCG | 4 cut(s) | 336, 338, 392, 617 |
| BstH2I | RGCGCY | 2 cut(s) | 60, 1199 |
| BstHHI | GCGC | 3 cut(s) | 59, 338, 1198 |
| BstKTI | GATC | 8 cut(s) | 6, 963, 994, 1013, 1024, 1206, 1243, 1357 |
| BstMAI | GTCTC | 2 cut(s) | 506, 706 |
| BstMBI | GATC | 8 cut(s) | 3, 960, 991, 1010, 1021, 1203, 1240, 1354 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 56, 152, 272, 995, 1460, 1469 |
| BstNI | CCWGG | 3 cut(s) | 1347, 1449, 1656 |
| BstNSI | RCATGY | 5 cut(s) | 587, 1075, 1079, 1432, 1479 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 20 |
| BstPI | GGTNACC | 1 cut(s) | 22 |
| BstSCI | CCNGG | 4 cut(s) | 730, 1345, 1447, 1654 |
| BstSFI | CTRYAG | 2 cut(s) | 358, 1147 |
| BstSLI | GKGCMC | 1 cut(s) | 583 |
| BstUI | CGCG | 4 cut(s) | 336, 338, 392, 617 |
| BstV1I | GCAGC | 1 cut(s) | 1484 |
| BstV2I | GAAGAC | 2 cut(s) | 214, 290 |
| BstX2I | RGATCY | 2 cut(s) | 1010, 1203 |
| BstYI | RGATCY | 2 cut(s) | 1010, 1203 |
| BstZ17I | GTATAC | 1 cut(s) | 774 |
| BsuRI | GGCC | 6 cut(s) | 349, 429, 883, 984, 1278, 1686 |
| BtgI | CCRYGG | 1 cut(s) | 424 |
| BtgZI | GCGATG | 2 cut(s) | 323, 1609 |
| BtrI | CACGTC | 2 cut(s) | 1246, 1388 |
| BtsCI | GGATG | 9 cut(s) | 34, 194, 700, 718, 732, 943, 1141, 1221, 1606 |
| BtsI | GCAGTG | 2 cut(s) | 644, 1056 |
| BtsIMutI | CAGTG | 4 cut(s) | 644, 1056, 1061, 1156 |
| Cac8I | GCNNGC | 6 cut(s) | 79, 1077, 1221, 1366, 1430, 1470 |
| CfoI | GCGC | 3 cut(s) | 59, 338, 1198 |
| Cfr13I | GGNCC | 5 cut(s) | 88, 348, 421, 982, 1439 |
| CpoI | CGGWCCG | 1 cut(s) | 88 |
| Csp6I | GTAC | 1 cut(s) | 865 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 747, 782, 1621, 1656 |
| CspI | CGGWCCG | 1 cut(s) | 88 |
| CviQI | GTAC | 1 cut(s) | 865 |
| DdeI | CTNAG | 4 cut(s) | 151, 825, 1518, 1542 |
| DinI | GGCGCC | 1 cut(s) | 58 |
| DpnI | GATC | 8 cut(s) | 5, 962, 993, 1012, 1023, 1205, 1242, 1356 |
| DpnII | GATC | 8 cut(s) | 3, 960, 991, 1010, 1021, 1203, 1240, 1354 |
| EaeI | YGGCCR | 2 cut(s) | 427, 1276 |
| Eam1104I | CTCTTC | 3 cut(s) | 260, 1092, 1532 |
| EarI | CTCTTC | 3 cut(s) | 260, 1092, 1532 |
| EciI | GGCGGA | 1 cut(s) | 80 |
| Eco130I | CCWWGG | 2 cut(s) | 424, 1127 |
| Eco31I | GGTCTC | 2 cut(s) | 506, 706 |
| Eco32I | GATATC | 1 cut(s) | 858 |
| Eco47I | GGWCC | 3 cut(s) | 88, 421, 1439 |
| Eco47III | AGCGCT | 1 cut(s) | 1197 |
| Eco57I | CTGAAG | 1 cut(s) | 119 |
| Eco91I | GGTNACC | 1 cut(s) | 22 |
| EcoO65I | GGTNACC | 1 cut(s) | 22 |
| EcoRII | CCWGG | 3 cut(s) | 1345, 1447, 1654 |
| EcoRV | GATATC | 1 cut(s) | 858 |
| EcoT14I | CCWWGG | 2 cut(s) | 424, 1127 |
| EcoT22I | ATGCAT | 2 cut(s) | 1077, 1585 |
| EgeI | GGCGCC | 1 cut(s) | 58 |
| EheI | GGCGCC | 1 cut(s) | 58 |
| ErhI | CCWWGG | 2 cut(s) | 424, 1127 |
| FaqI | GGGAC | 1 cut(s) | 1398 |
| FauI | CCCGC | 2 cut(s) | 331, 1611 |
| FbaI | TGATCA | 2 cut(s) | 3, 1240 |
| FblI | GTMKAC | 1 cut(s) | 773 |
| Fnu4HI | GCNGC | 6 cut(s) | 60, 63, 390, 430, 615, 1473 |
| FokI | GGATG | 9 cut(s) | 21, 181, 707, 725, 739, 950, 1148, 1228, 1613 |
| Fsp4HI | GCNGC | 6 cut(s) | 60, 63, 390, 430, 615, 1473 |
| FspBI | CTAG | 1 cut(s) | 708 |
| GlaI | GCGC | 3 cut(s) | 58, 337, 1197 |
| GluI | GCNGC | 6 cut(s) | 60, 63, 390, 430, 615, 1473 |
| GsaI | CCCAGC | 3 cut(s) | 1385, 1395, 1669 |
| GsuI | CTGGAG | 1 cut(s) | 1470 |
| HaeII | RGCGCY | 2 cut(s) | 60, 1199 |
| HaeIII | GGCC | 6 cut(s) | 349, 429, 883, 984, 1278, 1686 |
| HapII | CCGG | 5 cut(s) | 464, 731, 907, 935, 1210 |
| HhaI | GCGC | 3 cut(s) | 59, 338, 1198 |
| Hin1I | GRCGYC | 1 cut(s) | 57 |
| Hin6I | GCGC | 3 cut(s) | 57, 336, 1196 |
| HinP1I | GCGC | 3 cut(s) | 57, 336, 1196 |
| HincII | GTYRAC | 1 cut(s) | 1069 |
| HindII | GTYRAC | 1 cut(s) | 1069 |
| HindIII | AAGCTT | 3 cut(s) | 75, 1397, 1649 |
| HinfI | GANTC | 2 cut(s) | 1123, 1287 |
| HpaII | CCGG | 5 cut(s) | 464, 731, 907, 935, 1210 |
| HphI | GGTGA | 2 cut(s) | 16, 217 |
| Hpy166II | GTNNAC | 4 cut(s) | 774, 945, 1069, 1442 |
| Hpy188I | TCNGA | 3 cut(s) | 11, 39, 304 |
| Hpy188III | TCNNGA | 4 cut(s) | 280, 907, 1025, 1210 |
| Hpy8I | GTNNAC | 4 cut(s) | 774, 945, 1069, 1442 |
| Hpy99I | CGWCG | 1 cut(s) | 56 |
| HpyAV | CCTTC | 3 cut(s) | 517, 1022, 1126 |
| HpyCH4III | ACNGT | 3 cut(s) | 22, 978, 1151 |
| HpyCH4IV | ACGT | 2 cut(s) | 1245, 1387 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 56, 152, 272, 995, 1460, 1469 |
| HpyF3I | CTNAG | 4 cut(s) | 151, 825, 1518, 1542 |
| HpySE526I | ACGT | 2 cut(s) | 1245, 1387 |
| Hsp92I | GRCGYC | 1 cut(s) | 57 |
| HspAI | GCGC | 3 cut(s) | 57, 336, 1196 |
| KasI | GGCGCC | 1 cut(s) | 56 |
| Kpn2I | TCCGGA | 2 cut(s) | 906, 1209 |
| Ksp22I | TGATCA | 2 cut(s) | 3, 1240 |
| Kzo9I | GATC | 8 cut(s) | 3, 960, 991, 1010, 1021, 1203, 1240, 1354 |
| LguI | GCTCTTC | 1 cut(s) | 1532 |
| LmnI | GCTCC | 3 cut(s) | 131, 1451, 1460 |
| Lsp1109I | GCAGC | 1 cut(s) | 1484 |
| LweI | GCATC | 4 cut(s) | 717, 928, 1206, 1592 |
| MaeI | CTAG | 1 cut(s) | 708 |
| MaeII | ACGT | 2 cut(s) | 1245, 1387 |
| MaeIII | GTNAC | 2 cut(s) | 22, 1246 |
| MalI | GATC | 8 cut(s) | 5, 962, 993, 1012, 1023, 1205, 1242, 1356 |
| MbiI | CCGCTC | 3 cut(s) | 65, 126, 829 |
| MboI | GATC | 8 cut(s) | 3, 960, 991, 1010, 1021, 1203, 1240, 1354 |
| MboII | GAAGA | 9 cut(s) | 214, 247, 295, 1109, 1132, 1198, 1307, 1519, 1714 |
| MfeI | CAATTG | 1 cut(s) | 1697 |
| MflI | RGATCY | 2 cut(s) | 1010, 1203 |
| MhlI | GDGCHC | 2 cut(s) | 583, 1056 |
| MlsI | TGGCCA | 1 cut(s) | 1278 |
| MluCI | AATT | 9 cut(s) | 379, 570, 1000, 1414, 1555, 1644, 1674, 1697, 1710 |
| MluNI | TGGCCA | 1 cut(s) | 1278 |
| Mly113I | GGCGCC | 1 cut(s) | 57 |
| MlyI | GAGTC | 1 cut(s) | 1281 |
| MmeI | TCCRAC | 2 cut(s) | 489, 824 |
| Mox20I | TGGCCA | 1 cut(s) | 1278 |
| Mph1103I | ATGCAT | 2 cut(s) | 1077, 1585 |
| MroI | TCCGGA | 2 cut(s) | 906, 1209 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1526 |
| MscI | TGGCCA | 1 cut(s) | 1278 |
| MseI | TTAA | 6 cut(s) | 438, 1191, 1326, 1401, 1647, 1714 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1182, 1433 |
| Msp20I | TGGCCA | 1 cut(s) | 1278 |
| MspI | CCGG | 5 cut(s) | 464, 731, 907, 935, 1210 |
| MspR9I | CCNGG | 4 cut(s) | 732, 1347, 1449, 1656 |
| MunI | CAATTG | 1 cut(s) | 1697 |
| Mva1269I | GAATGC | 3 cut(s) | 478, 639, 667 |
| MvaI | CCWGG | 3 cut(s) | 1347, 1449, 1656 |
| MvnI | CGCG | 4 cut(s) | 336, 338, 392, 617 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 56, 152, 272, 995, 1460, 1469 |
| NarI | GGCGCC | 1 cut(s) | 57 |
| NciI | CCSGG | 1 cut(s) | 732 |
| NcoI | CCATGG | 1 cut(s) | 424 |
| NdeII | GATC | 8 cut(s) | 3, 960, 991, 1010, 1021, 1203, 1240, 1354 |
| NlaIV | GGNNCC | 3 cut(s) | 58, 613, 1440 |
| NmeAIII | GCCGAG | 1 cut(s) | 683 |
| NmuCI | GTSAC | 2 cut(s) | 22, 1246 |
| NsiI | ATGCAT | 2 cut(s) | 1077, 1585 |
| NspI | RCATGY | 5 cut(s) | 587, 1075, 1079, 1432, 1479 |
| PaeI | GCATGC | 2 cut(s) | 1079, 1432 |
| PciSI | GCTCTTC | 1 cut(s) | 1532 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 389 |
| PctI | GAATGC | 3 cut(s) | 478, 639, 667 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1526 |
| PfeI | GAWTC | 1 cut(s) | 1123 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1448 |
| PkrI | GCNGC | 6 cut(s) | 61, 64, 391, 431, 616, 1474 |
| PleI | GAGTC | 1 cut(s) | 1281 |
| PluTI | GGCGCC | 1 cut(s) | 60 |
| PpsI | GAGTC | 1 cut(s) | 1281 |
| PshAI | GACNNNNGTC | 1 cut(s) | 20 |
| Psp6I | CCWGG | 3 cut(s) | 1345, 1447, 1654 |
| PspEI | GGTNACC | 1 cut(s) | 22 |
| PspFI | CCCAGC | 3 cut(s) | 1381, 1391, 1665 |
| PspGI | CCWGG | 3 cut(s) | 1345, 1447, 1654 |
| PspN4I | GGNNCC | 3 cut(s) | 58, 613, 1440 |
| PspPI | GGNCC | 5 cut(s) | 88, 348, 421, 982, 1439 |
| PsuI | RGATCY | 2 cut(s) | 1010, 1203 |
| RsaI | GTAC | 1 cut(s) | 866 |
| RsaNI | GTAC | 1 cut(s) | 865 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1182, 1433 |
| Rsr2I | CGGWCCG | 1 cut(s) | 88 |
| RsrII | CGGWCCG | 1 cut(s) | 88 |
| SapI | GCTCTTC | 1 cut(s) | 1532 |
| SaqAI | TTAA | 6 cut(s) | 438, 1191, 1326, 1401, 1647, 1714 |
| SatI | GCNGC | 6 cut(s) | 60, 63, 390, 430, 615, 1473 |
| Sau3AI | GATC | 8 cut(s) | 3, 960, 991, 1010, 1021, 1203, 1240, 1354 |
| Sau96I | GGNCC | 5 cut(s) | 88, 348, 421, 982, 1439 |
| SchI | GAGTC | 1 cut(s) | 1281 |
| ScrFI | CCNGG | 4 cut(s) | 732, 1347, 1449, 1656 |
| SduI | GDGCHC | 2 cut(s) | 583, 1056 |
| SfaNI | GCATC | 4 cut(s) | 717, 928, 1206, 1592 |
| SfcI | CTRYAG | 2 cut(s) | 358, 1147 |
| SfoI | GGCGCC | 1 cut(s) | 58 |
| SinI | GGWCC | 3 cut(s) | 88, 421, 1439 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1182, 1433 |
| SmlI | CTYRAG | 1 cut(s) | 1199 |
| SmoI | CTYRAG | 1 cut(s) | 1199 |
| SphI | GCATGC | 2 cut(s) | 1079, 1432 |
| Sse9I | AATT | 9 cut(s) | 379, 570, 1000, 1414, 1555, 1644, 1674, 1697, 1710 |
| SspDI | GGCGCC | 1 cut(s) | 56 |
| SspI | AATATT | 1 cut(s) | 1339 |
| SspMI | CTAG | 1 cut(s) | 708 |
| StyD4I | CCNGG | 4 cut(s) | 730, 1345, 1447, 1654 |
| StyI | CCWWGG | 2 cut(s) | 424, 1127 |
| TaaI | ACNGT | 3 cut(s) | 22, 978, 1151 |
| TaiI | ACGT | 2 cut(s) | 1248, 1390 |
| TaqI | TCGA | 5 cut(s) | 281, 470, 627, 1024, 1233 |
| TaqII | GACCGA | 1 cut(s) | 76 |
| TasI | AATT | 9 cut(s) | 379, 570, 1000, 1414, 1555, 1644, 1674, 1697, 1710 |
| TauI | GCSGC | 5 cut(s) | 62, 65, 392, 432, 617 |
| TfiI | GAWTC | 1 cut(s) | 1123 |
| Tru1I | TTAA | 6 cut(s) | 438, 1191, 1326, 1401, 1647, 1714 |
| Tru9I | TTAA | 6 cut(s) | 438, 1191, 1326, 1401, 1647, 1714 |
| TscAI | CASTG | 4 cut(s) | 644, 1063, 1068, 1156 |
| TseFI | GTSAC | 2 cut(s) | 22, 1246 |
| TseI | GCWGC | 1 cut(s) | 1472 |
| Tsp45I | GTSAC | 2 cut(s) | 22, 1246 |
| TspDTI | ATGAA | 4 cut(s) | 549, 831, 1617, 1643 |
| TspGWI | ACGGA | 2 cut(s) | 535, 1503 |
| TspRI | CASTG | 4 cut(s) | 644, 1063, 1068, 1156 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1448 |
| VpaK11BI | GGWCC | 3 cut(s) | 88, 421, 1439 |
| XapI | RAATTY | 2 cut(s) | 379, 1710 |
| XceI | RCATGY | 5 cut(s) | 587, 1075, 1079, 1432, 1479 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 595 |
| XmiI | GTMKAC | 1 cut(s) | 773 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1526 |
| XspI | CTAG | 1 cut(s) | 708 |
| Zsp2I | ATGCAT | 2 cut(s) | 1077, 1585 |