Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1139 |
| AclWI | GGATC | 3 cut(s) | 106, 274, 372 |
| AcsI | RAATTY | 1 cut(s) | 870 |
| AdeI | CACNNNGTG | 1 cut(s) | 1190 |
| AfaI | GTAC | 4 cut(s) | 33, 541, 803, 1021 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 252, 586, 1094, 1139 |
| AgsI | TTSAA | 6 cut(s) | 147, 223, 488, 707, 1286, 1451 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1069 |
| AjnI | CCWGG | 2 cut(s) | 237, 673 |
| AluBI | AGCT | 6 cut(s) | 194, 350, 899, 1025, 1122, 1587 |
| AluI | AGCT | 6 cut(s) | 194, 350, 899, 1025, 1122, 1587 |
| Alw21I | GWGCWC | 2 cut(s) | 616, 646 |
| Alw26I | GTCTC | 1 cut(s) | 1346 |
| AlwI | GGATC | 3 cut(s) | 106, 274, 372 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1463 |
| AoxI | GGCC | 2 cut(s) | 182, 389 |
| ApeKI | GCWGC | 1 cut(s) | 1584 |
| ApoI | RAATTY | 1 cut(s) | 870 |
| AspLEI | GCGC | 3 cut(s) | 112, 1255, 1507 |
| AspS9I | GGNCC | 4 cut(s) | 140, 308, 389, 677 |
| AsuHPI | GGTGA | 2 cut(s) | 663, 740 |
| AsuNHI | GCTAGC | 1 cut(s) | 1118 |
| AvaII | GGWCC | 3 cut(s) | 140, 308, 677 |
| BbsI | GAAGAC | 1 cut(s) | 1426 |
| Bbv12I | GWGCWC | 2 cut(s) | 616, 646 |
| BccI | CCATC | 8 cut(s) | 128, 576, 677, 930, 1001, 1157, 1401, 1507 |
| BciT130I | CCWGG | 2 cut(s) | 239, 675 |
| BciVI | GTATCC | 2 cut(s) | 669, 712 |
| BclI | TGATCA | 1 cut(s) | 511 |
| BcoDI | GTCTC | 1 cut(s) | 1346 |
| BfaI | CTAG | 9 cut(s) | 453, 480, 501, 537, 626, 1053, 1089, 1119, 1535 |
| BfmI | CTRYAG | 2 cut(s) | 959, 1579 |
| BfuI | GTATCC | 2 cut(s) | 669, 712 |
| BisI | GCNGC | 1 cut(s) | 1585 |
| BlsI | GCNGC | 1 cut(s) | 1586 |
| Bme1390I | CCNGG | 2 cut(s) | 239, 675 |
| Bme18I | GGWCC | 3 cut(s) | 140, 308, 677 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1069 |
| BmgT120I | GGNCC | 4 cut(s) | 140, 308, 389, 677 |
| BmrFI | CCNGG | 2 cut(s) | 239, 675 |
| BmrI | ACTGGG | 1 cut(s) | 724 |
| BmsI | GCATC | 3 cut(s) | 121, 334, 820 |
| BmtI | GCTAGC | 1 cut(s) | 1122 |
| BmuI | ACTGGG | 1 cut(s) | 724 |
| BpiI | GAAGAC | 1 cut(s) | 1426 |
| BpmI | CTGGAG | 1 cut(s) | 178 |
| Bpu10I | CCTNAGC | 1 cut(s) | 900 |
| BpuEI | CTTGAG | 1 cut(s) | 966 |
| BsaBI | GATNNNNATC | 2 cut(s) | 103, 510 |
| BsaJI | CCNNGG | 1 cut(s) | 251 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 623, 653 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 252, 586, 1094, 1139 |
| Bse1I | ACTGG | 1 cut(s) | 719 |
| Bse8I | GATNNNNATC | 2 cut(s) | 103, 510 |
| BseBI | CCWGG | 2 cut(s) | 239, 675 |
| BseDI | CCNNGG | 1 cut(s) | 251 |
| BseGI | GGATG | 3 cut(s) | 1012, 1036, 1168 |
| BseJI | GATNNNNATC | 2 cut(s) | 103, 510 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 252, 586, 1094, 1139 |
| BseMII | CTCAG | 4 cut(s) | 200, 582, 629, 1266 |
| BseNI | ACTGG | 1 cut(s) | 719 |
| BseRI | GAGGAG | 1 cut(s) | 644 |
| BshFI | GGCC | 2 cut(s) | 184, 391 |
| BsiHKAI | GWGCWC | 2 cut(s) | 616, 646 |
| BslFI | GGGAC | 1 cut(s) | 1229 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 252, 586, 1094, 1139 |
| BsmAI | GTCTC | 1 cut(s) | 1346 |
| BsmFI | GGGAC | 1 cut(s) | 1229 |
| BsnI | GGCC | 2 cut(s) | 184, 391 |
| Bsp1286I | GDGCHC | 2 cut(s) | 616, 646 |
| Bsp143I | GATC | 5 cut(s) | 98, 279, 364, 511, 838 |
| BspANI | GGCC | 2 cut(s) | 184, 391 |
| BspCNI | CTCAG | 4 cut(s) | 199, 583, 628, 1267 |
| BspOI | GCTAGC | 1 cut(s) | 1122 |
| BspPI | GGATC | 3 cut(s) | 106, 274, 372 |
| BsrI | ACTGG | 1 cut(s) | 719 |
| BssECI | CCNNGG | 1 cut(s) | 251 |
| BssMI | GATC | 5 cut(s) | 98, 279, 364, 511, 838 |
| BssT1I | CCWWGG | 1 cut(s) | 251 |
| Bst2UI | CCWGG | 2 cut(s) | 239, 675 |
| Bst4CI | ACNGT | 5 cut(s) | 442, 847, 938, 963, 1190 |
| Bst6I | CTCTTC | 2 cut(s) | 761, 1093 |
| BstC8I | GCNNGC | 4 cut(s) | 1120, 1251, 1297, 1341 |
| BstDEI | CTNAG | 6 cut(s) | 35, 186, 591, 615, 900, 1275 |
| BstF5I | GGATG | 3 cut(s) | 1012, 1036, 1168 |
| BstHHI | GCGC | 3 cut(s) | 112, 1255, 1507 |
| BstKTI | GATC | 5 cut(s) | 101, 282, 367, 514, 841 |
| BstMAI | GTCTC | 1 cut(s) | 1346 |
| BstMBI | GATC | 5 cut(s) | 98, 279, 364, 511, 838 |
| BstNI | CCWGG | 2 cut(s) | 239, 675 |
| BstNSI | RCATGY | 3 cut(s) | 67, 1283, 1299 |
| BstSCI | CCNGG | 2 cut(s) | 237, 673 |
| BstSFI | CTRYAG | 2 cut(s) | 959, 1579 |
| BstV2I | GAAGAC | 1 cut(s) | 1426 |
| BstX2I | RGATCY | 2 cut(s) | 279, 364 |
| BstYI | RGATCY | 2 cut(s) | 279, 364 |
| BsuI | GTATCC | 2 cut(s) | 669, 712 |
| BsuRI | GGCC | 2 cut(s) | 184, 391 |
| BtsCI | GGATG | 3 cut(s) | 1012, 1036, 1168 |
| BtsIMutI | CAGTG | 1 cut(s) | 1195 |
| Cac8I | GCNNGC | 4 cut(s) | 1120, 1251, 1297, 1341 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1463 |
| CfoI | GCGC | 3 cut(s) | 112, 1255, 1507 |
| Cfr13I | GGNCC | 4 cut(s) | 140, 308, 389, 677 |
| CsiI | ACCWGGT | 1 cut(s) | 673 |
| Csp6I | GTAC | 4 cut(s) | 32, 540, 802, 1020 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1482, 1517 |
| CviQI | GTAC | 4 cut(s) | 32, 540, 802, 1020 |
| DdeI | CTNAG | 6 cut(s) | 35, 186, 591, 615, 900, 1275 |
| DpnI | GATC | 5 cut(s) | 100, 281, 366, 513, 840 |
| DpnII | GATC | 5 cut(s) | 98, 279, 364, 511, 838 |
| DraIII | CACNNNGTG | 1 cut(s) | 1190 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1069 |
| Eam1104I | CTCTTC | 2 cut(s) | 761, 1093 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1069 |
| EarI | CTCTTC | 2 cut(s) | 761, 1093 |
| Eco130I | CCWWGG | 1 cut(s) | 251 |
| Eco32I | GATATC | 1 cut(s) | 466 |
| Eco47I | GGWCC | 3 cut(s) | 140, 308, 677 |
| EcoO109I | RGGNCCY | 1 cut(s) | 140 |
| EcoRII | CCWGG | 2 cut(s) | 237, 673 |
| EcoRV | GATATC | 1 cut(s) | 466 |
| EcoT14I | CCWWGG | 1 cut(s) | 251 |
| EcoT22I | ATGCAT | 1 cut(s) | 1479 |
| ErhI | CCWWGG | 1 cut(s) | 251 |
| FaqI | GGGAC | 1 cut(s) | 1229 |
| FbaI | TGATCA | 1 cut(s) | 511 |
| Fnu4HI | GCNGC | 1 cut(s) | 1585 |
| FokI | GGATG | 3 cut(s) | 1019, 1043, 1175 |
| Fsp4HI | GCNGC | 1 cut(s) | 1585 |
| FspBI | CTAG | 9 cut(s) | 453, 480, 501, 537, 626, 1053, 1089, 1119, 1535 |
| GlaI | GCGC | 3 cut(s) | 111, 1254, 1506 |
| GluI | GCNGC | 1 cut(s) | 1585 |
| GsuI | CTGGAG | 1 cut(s) | 178 |
| HaeIII | GGCC | 2 cut(s) | 184, 391 |
| HhaI | GCGC | 3 cut(s) | 112, 1255, 1507 |
| Hin6I | GCGC | 3 cut(s) | 110, 1253, 1505 |
| HinP1I | GCGC | 3 cut(s) | 110, 1253, 1505 |
| HincII | GTYRAC | 1 cut(s) | 883 |
| HindII | GTYRAC | 1 cut(s) | 883 |
| HindIII | AAGCTT | 1 cut(s) | 348 |
| HinfI | GANTC | 6 cut(s) | 242, 418, 506, 576, 1447, 1454 |
| HpaI | GTTAAC | 1 cut(s) | 883 |
| HphI | GGTGA | 2 cut(s) | 663, 740 |
| Hpy166II | GTNNAC | 1 cut(s) | 883 |
| Hpy188I | TCNGA | 3 cut(s) | 189, 511, 654 |
| Hpy188III | TCNNGA | 7 cut(s) | 127, 320, 680, 932, 983, 1179, 1451 |
| Hpy8I | GTNNAC | 1 cut(s) | 883 |
| HpyAV | CCTTC | 5 cut(s) | 35, 153, 217, 295, 871 |
| HpyCH4III | ACNGT | 5 cut(s) | 442, 847, 938, 963, 1190 |
| HpyCH4IV | ACGT | 1 cut(s) | 316 |
| HpyCH4V | TGCA | 9 cut(s) | 794, 811, 917, 1299, 1325, 1361, 1378, 1477, 1493 |
| HpyF3I | CTNAG | 6 cut(s) | 35, 186, 591, 615, 900, 1275 |
| HpySE526I | ACGT | 1 cut(s) | 316 |
| HspAI | GCGC | 3 cut(s) | 110, 1253, 1505 |
| Ksp22I | TGATCA | 1 cut(s) | 511 |
| KspAI | GTTAAC | 1 cut(s) | 883 |
| Kzo9I | GATC | 5 cut(s) | 98, 279, 364, 511, 838 |
| LmnI | GCTCC | 1 cut(s) | 896 |
| LweI | GCATC | 3 cut(s) | 121, 334, 820 |
| MabI | ACCWGGT | 1 cut(s) | 673 |
| MaeI | CTAG | 9 cut(s) | 453, 480, 501, 537, 626, 1053, 1089, 1119, 1535 |
| MaeII | ACGT | 1 cut(s) | 316 |
| MaeIII | GTNAC | 5 cut(s) | 446, 473, 728, 736, 932 |
| MalI | GATC | 5 cut(s) | 100, 281, 366, 513, 840 |
| MboI | GATC | 5 cut(s) | 98, 279, 364, 511, 838 |
| MboII | GAAGA | 5 cut(s) | 778, 877, 1110, 1431, 1563 |
| MfeI | CAATTG | 3 cut(s) | 215, 422, 1508 |
| MflI | RGATCY | 2 cut(s) | 279, 364 |
| MhlI | GDGCHC | 2 cut(s) | 616, 646 |
| MluCI | AATT | 7 cut(s) | 215, 422, 870, 1080, 1219, 1330, 1508 |
| MlyI | GAGTC | 1 cut(s) | 412 |
| MmeI | TCCRAC | 2 cut(s) | 76, 990 |
| Mph1103I | ATGCAT | 1 cut(s) | 1479 |
| MseI | TTAA | 6 cut(s) | 120, 273, 786, 882, 1083, 1382 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1260, 1395 |
| MspA1I | CMGCKG | 2 cut(s) | 194, 1587 |
| MspR9I | CCNGG | 2 cut(s) | 239, 675 |
| MunI | CAATTG | 3 cut(s) | 215, 422, 1508 |
| MvaI | CCWGG | 2 cut(s) | 239, 675 |
| NdeII | GATC | 5 cut(s) | 98, 279, 364, 511, 838 |
| NheI | GCTAGC | 1 cut(s) | 1118 |
| NmuCI | GTSAC | 4 cut(s) | 473, 728, 736, 932 |
| NsiI | ATGCAT | 1 cut(s) | 1479 |
| NspI | RCATGY | 3 cut(s) | 67, 1283, 1299 |
| PaeI | GCATGC | 1 cut(s) | 1299 |
| PfeI | GAWTC | 5 cut(s) | 242, 506, 576, 1447, 1454 |
| PflFI | GACNNNGTC | 1 cut(s) | 734 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1139 |
| PkrI | GCNGC | 1 cut(s) | 1586 |
| PleI | GAGTC | 1 cut(s) | 412 |
| PpsI | GAGTC | 1 cut(s) | 412 |
| PpuMI | RGGWCCY | 1 cut(s) | 140 |
| Psp5II | RGGWCCY | 1 cut(s) | 140 |
| Psp6I | CCWGG | 2 cut(s) | 237, 673 |
| PspGI | CCWGG | 2 cut(s) | 237, 673 |
| PspPI | GGNCC | 4 cut(s) | 140, 308, 389, 677 |
| PspPPI | RGGWCCY | 1 cut(s) | 140 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1463 |
| PsuI | RGATCY | 2 cut(s) | 279, 364 |
| PsyI | GACNNNGTC | 1 cut(s) | 734 |
| PvuII | CAGCTG | 2 cut(s) | 194, 1587 |
| RsaI | GTAC | 4 cut(s) | 33, 541, 803, 1021 |
| RsaNI | GTAC | 4 cut(s) | 32, 540, 802, 1020 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1260, 1395 |
| SaqAI | TTAA | 6 cut(s) | 120, 273, 786, 882, 1083, 1382 |
| SatI | GCNGC | 1 cut(s) | 1585 |
| Sau3AI | GATC | 5 cut(s) | 98, 279, 364, 511, 838 |
| Sau96I | GGNCC | 4 cut(s) | 140, 308, 389, 677 |
| SchI | GAGTC | 1 cut(s) | 412 |
| ScrFI | CCNGG | 2 cut(s) | 239, 675 |
| SduI | GDGCHC | 2 cut(s) | 616, 646 |
| SexAI | ACCWGGT | 1 cut(s) | 673 |
| SfaNI | GCATC | 3 cut(s) | 121, 334, 820 |
| SfcI | CTRYAG | 2 cut(s) | 959, 1579 |
| SinI | GGWCC | 3 cut(s) | 140, 308, 677 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1260, 1395 |
| SmlI | CTYRAG | 1 cut(s) | 981 |
| SmoI | CTYRAG | 1 cut(s) | 981 |
| SphI | GCATGC | 1 cut(s) | 1299 |
| Sse9I | AATT | 7 cut(s) | 215, 422, 870, 1080, 1219, 1330, 1508 |
| SspMI | CTAG | 9 cut(s) | 453, 480, 501, 537, 626, 1053, 1089, 1119, 1535 |
| StyD4I | CCNGG | 2 cut(s) | 237, 673 |
| StyI | CCWWGG | 1 cut(s) | 251 |
| TaaI | ACNGT | 5 cut(s) | 442, 847, 938, 963, 1190 |
| TaiI | ACGT | 1 cut(s) | 319 |
| TaqII | GACCGA | 1 cut(s) | 1059 |
| TasI | AATT | 7 cut(s) | 215, 422, 870, 1080, 1219, 1330, 1508 |
| TatI | WGTACW | 1 cut(s) | 801 |
| TfiI | GAWTC | 5 cut(s) | 242, 506, 576, 1447, 1454 |
| Tru1I | TTAA | 6 cut(s) | 120, 273, 786, 882, 1083, 1382 |
| Tru9I | TTAA | 6 cut(s) | 120, 273, 786, 882, 1083, 1382 |
| TscAI | CASTG | 1 cut(s) | 1195 |
| TseFI | GTSAC | 4 cut(s) | 473, 728, 736, 932 |
| TseI | GCWGC | 1 cut(s) | 1584 |
| Tsp45I | GTSAC | 4 cut(s) | 473, 728, 736, 932 |
| TspDTI | ATGAA | 7 cut(s) | 80, 198, 521, 611, 815, 1218, 1563 |
| TspRI | CASTG | 1 cut(s) | 1195 |
| Tth111I | GACNNNGTC | 1 cut(s) | 734 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1139 |
| VpaK11BI | GGWCC | 3 cut(s) | 140, 308, 677 |
| XapI | RAATTY | 1 cut(s) | 870 |
| XceI | RCATGY | 3 cut(s) | 67, 1283, 1299 |
| XspI | CTAG | 9 cut(s) | 453, 480, 501, 537, 626, 1053, 1089, 1119, 1535 |
| Zsp2I | ATGCAT | 1 cut(s) | 1479 |