ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 4 cut(s) | 139, 253, 498, 875 |
| AcsI | RAATTY | 2 cut(s) | 673, 845 |
| AcuI | CTGAAG | 2 cut(s) | 47, 161 |
| AfaI | GTAC | 2 cut(s) | 454, 805 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 273, 1041 |
| AflIII | ACRYGT | 1 cut(s) | 455 |
| AgsI | TTSAA | 4 cut(s) | 587, 650, 844, 850 |
| AjiI | CACGTC | 2 cut(s) | 20, 666 |
| AjnI | CCWGG | 1 cut(s) | 406 |
| AluBI | AGCT | 7 cut(s) | 295, 314, 481, 614, 631, 704, 800 |
| AluI | AGCT | 7 cut(s) | 295, 314, 481, 614, 631, 704, 800 |
| Alw26I | GTCTC | 2 cut(s) | 525, 828 |
| AlwI | GGATC | 4 cut(s) | 139, 253, 498, 875 |
| AoxI | GGCC | 2 cut(s) | 307, 1018 |
| ApeKI | GCWGC | 1 cut(s) | 793 |
| ApoI | RAATTY | 2 cut(s) | 673, 845 |
| AspLEI | GCGC | 1 cut(s) | 763 |
| AspS9I | GGNCC | 5 cut(s) | 404, 572, 654, 775, 1018 |
| AsuHPI | GGTGA | 1 cut(s) | 532 |
| AvaII | GGWCC | 4 cut(s) | 404, 572, 654, 775 |
| BanII | GRGCYC | 1 cut(s) | 1003 |
| BbvI | GCAGC | 1 cut(s) | 780 |
| BceAI | ACGGC | 1 cut(s) | 961 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 912, 946 |
| BciT130I | CCWGG | 1 cut(s) | 408 |
| BcoDI | GTCTC | 2 cut(s) | 525, 828 |
| BfaI | CTAG | 5 cut(s) | 641, 744, 801, 897, 915 |
| BisI | GCNGC | 1 cut(s) | 794 |
| BlsI | GCNGC | 1 cut(s) | 795 |
| BmcAI | AGTACT | 1 cut(s) | 805 |
| Bme1390I | CCNGG | 1 cut(s) | 408 |
| Bme18I | GGWCC | 4 cut(s) | 404, 572, 654, 775 |
| BmgBI | CACGTC | 2 cut(s) | 20, 666 |
| BmgT120I | GGNCC | 5 cut(s) | 404, 572, 654, 775, 1018 |
| BmiI | GGNNCC | 1 cut(s) | 655 |
| BmrFI | CCNGG | 1 cut(s) | 408 |
| BmrI | ACTGGG | 1 cut(s) | 332 |
| BmsI | GCATC | 2 cut(s) | 40, 763 |
| BmuI | ACTGGG | 1 cut(s) | 332 |
| BpmI | CTGGAG | 1 cut(s) | 336 |
| BsaJI | CCNNGG | 1 cut(s) | 515 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 273, 1041 |
| Bse1I | ACTGG | 2 cut(s) | 327, 436 |
| Bse3DI | GCAATG | 1 cut(s) | 509 |
| BseBI | CCWGG | 1 cut(s) | 408 |
| BseDI | CCNNGG | 1 cut(s) | 515 |
| BseGI | GGATG | 1 cut(s) | 349 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 273, 1041 |
| BseMI | GCAATG | 1 cut(s) | 509 |
| BseMII | CTCAG | 4 cut(s) | 92, 168, 206, 282 |
| BseNI | ACTGG | 2 cut(s) | 327, 436 |
| BseXI | GCAGC | 1 cut(s) | 780 |
| BsgI | GTGCAG | 1 cut(s) | 895 |
| BshFI | GGCC | 2 cut(s) | 309, 1020 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 273, 1041 |
| BsmAI | GTCTC | 2 cut(s) | 525, 828 |
| BsnI | GGCC | 2 cut(s) | 309, 1020 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1003 |
| BspANI | GGCC | 2 cut(s) | 309, 1020 |
| BspCNI | CTCAG | 4 cut(s) | 91, 167, 205, 281 |
| BspLI | GGNNCC | 1 cut(s) | 655 |
| BspPI | GGATC | 4 cut(s) | 139, 253, 498, 875 |
| BspQI | GCTCTTC | 2 cut(s) | 816, 991 |
| BsrDI | GCAATG | 1 cut(s) | 509 |
| BsrI | ACTGG | 2 cut(s) | 327, 436 |
| BssECI | CCNNGG | 1 cut(s) | 515 |
| BssT1I | CCWWGG | 1 cut(s) | 515 |
| Bst2UI | CCWGG | 1 cut(s) | 408 |
| Bst4CI | ACNGT | 2 cut(s) | 367, 959 |
| Bst6I | CTCTTC | 3 cut(s) | 816, 826, 991 |
| BstC8I | GCNNGC | 1 cut(s) | 798 |
| BstDEI | CTNAG | 5 cut(s) | 78, 154, 192, 268, 1030 |
| BstF5I | GGATG | 1 cut(s) | 349 |
| BstHHI | GCGC | 1 cut(s) | 763 |
| BstMAI | GTCTC | 2 cut(s) | 525, 828 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 760, 806 |
| BstNI | CCWGG | 1 cut(s) | 408 |
| BstNSI | RCATGY | 1 cut(s) | 459 |
| BstSCI | CCNGG | 1 cut(s) | 406 |
| BstV1I | GCAGC | 1 cut(s) | 780 |
| BstX2I | RGATCY | 3 cut(s) | 131, 245, 490 |
| BstYI | RGATCY | 3 cut(s) | 131, 245, 490 |
| BsuRI | GGCC | 2 cut(s) | 309, 1020 |
| BtrI | CACGTC | 2 cut(s) | 20, 666 |
| BtsCI | GGATG | 1 cut(s) | 349 |
| Cac8I | GCNNGC | 1 cut(s) | 798 |
| CfoI | GCGC | 1 cut(s) | 763 |
| Cfr13I | GGNCC | 5 cut(s) | 404, 572, 654, 775, 1018 |
| Csp6I | GTAC | 2 cut(s) | 453, 804 |
| CviAII | CATG | 4 cut(s) | 456, 720, 779, 869 |
| CviQI | GTAC | 2 cut(s) | 453, 804 |
| DdeI | CTNAG | 5 cut(s) | 78, 154, 192, 268, 1030 |
| Eam1104I | CTCTTC | 3 cut(s) | 816, 826, 991 |
| EarI | CTCTTC | 3 cut(s) | 816, 826, 991 |
| Eco130I | CCWWGG | 1 cut(s) | 515 |
| Eco24I | GRGCYC | 1 cut(s) | 1003 |
| Eco47I | GGWCC | 4 cut(s) | 404, 572, 654, 775 |
| Eco57I | CTGAAG | 2 cut(s) | 47, 161 |
| EcoRI | GAATTC | 1 cut(s) | 673 |
| EcoRII | CCWGG | 1 cut(s) | 406 |
| EcoT14I | CCWWGG | 1 cut(s) | 515 |
| EcoT38I | GRGCYC | 1 cut(s) | 1003 |
| ErhI | CCWWGG | 1 cut(s) | 515 |
| FaeI | CATG | 4 cut(s) | 459, 723, 782, 872 |
| FatI | CATG | 4 cut(s) | 455, 719, 778, 868 |
| Fnu4HI | GCNGC | 1 cut(s) | 794 |
| FokI | GGATG | 1 cut(s) | 356 |
| FriOI | GRGCYC | 1 cut(s) | 1003 |
| Fsp4HI | GCNGC | 1 cut(s) | 794 |
| FspBI | CTAG | 5 cut(s) | 641, 744, 801, 897, 915 |
| GlaI | GCGC | 1 cut(s) | 762 |
| GluI | GCNGC | 1 cut(s) | 794 |
| GsuI | CTGGAG | 1 cut(s) | 336 |
| HaeIII | GGCC | 2 cut(s) | 309, 1020 |
| HhaI | GCGC | 1 cut(s) | 763 |
| Hin1II | CATG | 4 cut(s) | 459, 723, 782, 872 |
| Hin6I | GCGC | 1 cut(s) | 761 |
| HinP1I | GCGC | 1 cut(s) | 761 |
| HindIII | AAGCTT | 2 cut(s) | 479, 612 |
| HinfI | GANTC | 8 cut(s) | 146, 260, 506, 544, 577, 770, 840, 929 |
| HphI | GGTGA | 1 cut(s) | 532 |
| Hpy166II | GTNNAC | 3 cut(s) | 71, 185, 461 |
| Hpy188III | TCNNGA | 3 cut(s) | 584, 828, 962 |
| Hpy8I | GTNNAC | 3 cut(s) | 71, 185, 461 |
| HpyAV | CCTTC | 4 cut(s) | 71, 185, 299, 592 |
| HpyCH4III | ACNGT | 2 cut(s) | 367, 959 |
| HpyCH4IV | ACGT | 3 cut(s) | 19, 463, 665 |
| HpyCH4V | TGCA | 9 cut(s) | 23, 91, 103, 205, 217, 626, 796, 865, 912 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 760, 806 |
| HpyF3I | CTNAG | 5 cut(s) | 78, 154, 192, 268, 1030 |
| HpySE526I | ACGT | 3 cut(s) | 19, 463, 665 |
| Hsp92II | CATG | 4 cut(s) | 459, 723, 782, 872 |
| HspAI | GCGC | 1 cut(s) | 761 |
| LguI | GCTCTTC | 2 cut(s) | 816, 991 |
| Lsp1109I | GCAGC | 1 cut(s) | 780 |
| LweI | GCATC | 2 cut(s) | 40, 763 |
| MaeI | CTAG | 5 cut(s) | 641, 744, 801, 897, 915 |
| MaeII | ACGT | 3 cut(s) | 19, 463, 665 |
| MaeIII | GTNAC | 1 cut(s) | 725 |
| MboII | GAAGA | 6 cut(s) | 47, 161, 803, 843, 913, 1008 |
| MfeI | CAATTG | 1 cut(s) | 686 |
| MflI | RGATCY | 3 cut(s) | 131, 245, 490 |
| MhlI | GDGCHC | 1 cut(s) | 1003 |
| MluCI | AATT | 6 cut(s) | 8, 86, 200, 673, 686, 845 |
| MlyI | GAGTC | 1 cut(s) | 571 |
| MmeI | TCCRAC | 5 cut(s) | 63, 132, 177, 246, 599 |
| MseI | TTAA | 1 cut(s) | 537 |
| MslI | CAYNNNNRTG | 1 cut(s) | 36 |
| MspR9I | CCNGG | 1 cut(s) | 408 |
| MunI | CAATTG | 1 cut(s) | 686 |
| MvaI | CCWGG | 1 cut(s) | 408 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 760, 806 |
| NlaIII | CATG | 4 cut(s) | 459, 723, 782, 872 |
| NlaIV | GGNNCC | 1 cut(s) | 655 |
| NmeAIII | GCCGAG | 1 cut(s) | 789 |
| NmuCI | GTSAC | 1 cut(s) | 725 |
| NspI | RCATGY | 1 cut(s) | 459 |
| PciI | ACATGT | 1 cut(s) | 455 |
| PciSI | GCTCTTC | 2 cut(s) | 816, 991 |
| PfeI | GAWTC | 7 cut(s) | 146, 260, 506, 544, 770, 840, 929 |
| PfoI | TCCNGGA | 1 cut(s) | 406 |
| PkrI | GCNGC | 1 cut(s) | 795 |
| PleI | GAGTC | 1 cut(s) | 571 |
| PpsI | GAGTC | 1 cut(s) | 571 |
| PscI | ACATGT | 1 cut(s) | 455 |
| Psp6I | CCWGG | 1 cut(s) | 406 |
| PspGI | CCWGG | 1 cut(s) | 406 |
| PspN4I | GGNNCC | 1 cut(s) | 655 |
| PspPI | GGNCC | 5 cut(s) | 404, 572, 654, 775, 1018 |
| PsuI | RGATCY | 3 cut(s) | 131, 245, 490 |
| RsaI | GTAC | 2 cut(s) | 454, 805 |
| RsaNI | GTAC | 2 cut(s) | 453, 804 |
| RseI | CAYNNNNRTG | 1 cut(s) | 36 |
| SapI | GCTCTTC | 2 cut(s) | 816, 991 |
| SaqAI | TTAA | 1 cut(s) | 537 |
| SatI | GCNGC | 1 cut(s) | 794 |
| Sau96I | GGNCC | 5 cut(s) | 404, 572, 654, 775, 1018 |
| ScaI | AGTACT | 1 cut(s) | 805 |
| SchI | GAGTC | 1 cut(s) | 571 |
| ScrFI | CCNGG | 1 cut(s) | 408 |
| SduI | GDGCHC | 1 cut(s) | 1003 |
| SfaNI | GCATC | 2 cut(s) | 40, 763 |
| SinI | GGWCC | 4 cut(s) | 404, 572, 654, 775 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 36 |
| Sse9I | AATT | 6 cut(s) | 8, 86, 200, 673, 686, 845 |
| SspMI | CTAG | 5 cut(s) | 641, 744, 801, 897, 915 |
| StyD4I | CCNGG | 1 cut(s) | 406 |
| StyI | CCWWGG | 1 cut(s) | 515 |
| TaaI | ACNGT | 2 cut(s) | 367, 959 |
| TaiI | ACGT | 3 cut(s) | 22, 466, 668 |
| TaqI | TCGA | 3 cut(s) | 149, 263, 829 |
| TasI | AATT | 6 cut(s) | 8, 86, 200, 673, 686, 845 |
| TatI | WGTACW | 1 cut(s) | 803 |
| TfiI | GAWTC | 7 cut(s) | 146, 260, 506, 544, 770, 840, 929 |
| Tru1I | TTAA | 1 cut(s) | 537 |
| Tru9I | TTAA | 1 cut(s) | 537 |
| TseFI | GTSAC | 1 cut(s) | 725 |
| TseI | GCWGC | 1 cut(s) | 793 |
| Tsp45I | GTSAC | 1 cut(s) | 725 |
| TspDTI | ATGAA | 3 cut(s) | 498, 611, 961 |
| TspGWI | ACGGA | 1 cut(s) | 353 |
| VpaK11BI | GGWCC | 4 cut(s) | 404, 572, 654, 775 |
| XapI | RAATTY | 2 cut(s) | 673, 845 |
| XceI | RCATGY | 1 cut(s) | 459 |
| XspI | CTAG | 5 cut(s) | 641, 744, 801, 897, 915 |
| ZrmI | AGTACT | 1 cut(s) | 805 |