Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| FBD | PF08387 | 13 - 48 | 8.3e-07 | FBD |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 566 |
| AccB1I | GGYRCC | 2 cut(s) | 329, 601 |
| AciI | CCGC | 2 cut(s) | 75, 155 |
| AcoI | YGGCCR | 1 cut(s) | 1193 |
| AcsI | RAATTY | 2 cut(s) | 415, 652 |
| AcuI | CTGAAG | 3 cut(s) | 68, 228, 1035 |
| AcvI | CACGTG | 1 cut(s) | 766 |
| AfaI | GTAC | 6 cut(s) | 426, 502, 770, 862, 977, 1172 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 52, 279, 446 |
| AflII | CTTAAG | 1 cut(s) | 1055 |
| AflIII | ACRYGT | 2 cut(s) | 763, 765 |
| AgsI | TTSAA | 5 cut(s) | 420, 748, 783, 1244, 1304 |
| AjnI | CCWGG | 4 cut(s) | 249, 266, 341, 1346 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 884, 916, 1201, 1233 |
| AluBI | AGCT | 8 cut(s) | 25, 307, 700, 790, 824, 1054, 1133, 1307 |
| AluI | AGCT | 8 cut(s) | 25, 307, 700, 790, 824, 1054, 1133, 1307 |
| Alw26I | GTCTC | 1 cut(s) | 839 |
| AoxI | GGCC | 3 cut(s) | 257, 1193, 1357 |
| ApeKI | GCWGC | 2 cut(s) | 661, 868 |
| ApoI | RAATTY | 2 cut(s) | 415, 652 |
| AspLEI | GCGC | 1 cut(s) | 292 |
| AspS9I | GGNCC | 3 cut(s) | 270, 403, 1357 |
| AsuC2I | CCSGG | 1 cut(s) | 598 |
| AsuHPI | GGTGA | 4 cut(s) | 35, 67, 365, 907 |
| AvaII | GGWCC | 2 cut(s) | 270, 403 |
| BaeGI | GKGCMC | 1 cut(s) | 334 |
| BalI | TGGCCA | 1 cut(s) | 1195 |
| BanI | GGYRCC | 2 cut(s) | 329, 601 |
| BbrPI | CACGTG | 1 cut(s) | 766 |
| BbsI | GAAGAC | 1 cut(s) | 701 |
| BbvI | GCAGC | 2 cut(s) | 673, 880 |
| BccI | CCATC | 5 cut(s) | 130, 187, 845, 1144, 1283 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 369, 403 |
| BciT130I | CCWGG | 4 cut(s) | 251, 268, 343, 1348 |
| BciVI | GTATCC | 1 cut(s) | 1230 |
| BclI | TGATCA | 1 cut(s) | 40 |
| BcnI | CCSGG | 1 cut(s) | 598 |
| BcoDI | GTCTC | 1 cut(s) | 839 |
| BfaI | CTAG | 2 cut(s) | 293, 1148 |
| BfmI | CTRYAG | 1 cut(s) | 990 |
| BfrI | CTTAAG | 1 cut(s) | 1055 |
| BfuAI | ACCTGC | 1 cut(s) | 566 |
| BfuI | GTATCC | 1 cut(s) | 1230 |
| BisI | GCNGC | 2 cut(s) | 662, 869 |
| BlpI | GCTNAGC | 2 cut(s) | 303, 495 |
| BlsI | GCNGC | 2 cut(s) | 663, 870 |
| Bme1390I | CCNGG | 5 cut(s) | 251, 268, 343, 598, 1348 |
| Bme18I | GGWCC | 2 cut(s) | 270, 403 |
| BmgT120I | GGNCC | 3 cut(s) | 270, 403, 1357 |
| BmiI | GGNNCC | 2 cut(s) | 331, 603 |
| BmrFI | CCNGG | 5 cut(s) | 251, 268, 343, 598, 1348 |
| BpiI | GAAGAC | 1 cut(s) | 701 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 616, 648 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 303, 495 |
| BpuEI | CTTGAG | 2 cut(s) | 47, 812 |
| BpuMI | CCSGG | 1 cut(s) | 598 |
| BsaAI | YACGTR | 1 cut(s) | 766 |
| BsaJI | CCNNGG | 3 cut(s) | 597, 979, 1319 |
| BsaWI | WCCGGW | 2 cut(s) | 516, 924 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 52, 279, 446 |
| BseBI | CCWGG | 4 cut(s) | 251, 268, 343, 1348 |
| BseDI | CCNNGG | 3 cut(s) | 597, 979, 1319 |
| BseGI | GGATG | 3 cut(s) | 198, 246, 1318 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 52, 279, 446 |
| BseMII | CTCAG | 3 cut(s) | 294, 509, 1034 |
| BseSI | GKGCMC | 1 cut(s) | 334 |
| BseXI | GCAGC | 2 cut(s) | 673, 880 |
| BsgI | GTGCAG | 3 cut(s) | 385, 399, 1107 |
| BshFI | GGCC | 3 cut(s) | 259, 1195, 1359 |
| BshNI | GGYRCC | 2 cut(s) | 329, 601 |
| BsiSI | CCGG | 4 cut(s) | 72, 517, 597, 925 |
| BslFI | GGGAC | 1 cut(s) | 245 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 52, 279, 446 |
| BsmAI | GTCTC | 1 cut(s) | 839 |
| BsmBI | CGTCTC | 1 cut(s) | 839 |
| BsmFI | GGGAC | 1 cut(s) | 245 |
| BsnI | GGCC | 3 cut(s) | 259, 1195, 1359 |
| Bsp1286I | GDGCHC | 1 cut(s) | 334 |
| Bsp1407I | TGTACA | 1 cut(s) | 768 |
| Bsp143I | GATC | 1 cut(s) | 40 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 303, 495 |
| Bsp19I | CCATGG | 1 cut(s) | 1319 |
| BspACI | CCGC | 2 cut(s) | 75, 155 |
| BspANI | GGCC | 3 cut(s) | 259, 1195, 1359 |
| BspCNI | CTCAG | 3 cut(s) | 295, 508, 1035 |
| BspHI | TCATGA | 1 cut(s) | 1180 |
| BspLI | GGNNCC | 2 cut(s) | 331, 603 |
| BspMI | ACCTGC | 1 cut(s) | 566 |
| BspT107I | GGYRCC | 2 cut(s) | 329, 601 |
| BspTI | CTTAAG | 1 cut(s) | 1055 |
| BsrGI | TGTACA | 1 cut(s) | 768 |
| BssECI | CCNNGG | 3 cut(s) | 597, 979, 1319 |
| BssMI | GATC | 1 cut(s) | 40 |
| BssT1I | CCWWGG | 2 cut(s) | 979, 1319 |
| Bst2UI | CCWGG | 4 cut(s) | 251, 268, 343, 1348 |
| Bst4CI | ACNGT | 2 cut(s) | 363, 1213 |
| BstAFI | CTTAAG | 1 cut(s) | 1055 |
| BstAUI | TGTACA | 1 cut(s) | 768 |
| BstBAI | YACGTR | 1 cut(s) | 766 |
| BstC8I | GCNNGC | 2 cut(s) | 1197, 1225 |
| BstDEI | CTNAG | 3 cut(s) | 303, 495, 1043 |
| BstDSI | CCRYGG | 1 cut(s) | 1319 |
| BstEII | GGTNACC | 1 cut(s) | 449 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 50 |
| BstF5I | GGATG | 3 cut(s) | 198, 246, 1318 |
| BstHHI | GCGC | 1 cut(s) | 292 |
| BstKTI | GATC | 1 cut(s) | 43 |
| BstMAI | GTCTC | 1 cut(s) | 839 |
| BstMBI | GATC | 1 cut(s) | 40 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 289, 505 |
| BstNI | CCWGG | 4 cut(s) | 251, 268, 343, 1348 |
| BstPI | GGTNACC | 1 cut(s) | 449 |
| BstSCI | CCNGG | 5 cut(s) | 249, 266, 341, 596, 1346 |
| BstSFI | CTRYAG | 1 cut(s) | 990 |
| BstSLI | GKGCMC | 1 cut(s) | 334 |
| BstV1I | GCAGC | 2 cut(s) | 673, 880 |
| BstV2I | GAAGAC | 1 cut(s) | 701 |
| BsuI | GTATCC | 1 cut(s) | 1230 |
| BsuRI | GGCC | 3 cut(s) | 259, 1195, 1359 |
| BtgI | CCRYGG | 1 cut(s) | 1319 |
| BtsCI | GGATG | 3 cut(s) | 198, 246, 1318 |
| BveI | ACCTGC | 1 cut(s) | 566 |
| Cac8I | GCNNGC | 2 cut(s) | 1197, 1225 |
| CciI | TCATGA | 1 cut(s) | 1180 |
| CfoI | GCGC | 1 cut(s) | 292 |
| Cfr13I | GGNCC | 3 cut(s) | 270, 403, 1357 |
| CseI | GACGC | 1 cut(s) | 497 |
| Csp6I | GTAC | 6 cut(s) | 425, 501, 769, 861, 976, 1171 |
| CviQI | GTAC | 6 cut(s) | 425, 501, 769, 861, 976, 1171 |
| DdeI | CTNAG | 3 cut(s) | 303, 495, 1043 |
| DpnI | GATC | 1 cut(s) | 42 |
| DpnII | GATC | 1 cut(s) | 40 |
| DraI | TTTAAA | 1 cut(s) | 651 |
| EaeI | YGGCCR | 1 cut(s) | 1193 |
| EciI | GGCGGA | 1 cut(s) | 170 |
| Eco130I | CCWWGG | 2 cut(s) | 979, 1319 |
| Eco147I | AGGCCT | 1 cut(s) | 259 |
| Eco32I | GATATC | 1 cut(s) | 1099 |
| Eco47I | GGWCC | 2 cut(s) | 270, 403 |
| Eco57I | CTGAAG | 3 cut(s) | 68, 228, 1035 |
| Eco72I | CACGTG | 1 cut(s) | 766 |
| Eco91I | GGTNACC | 1 cut(s) | 449 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 50 |
| EcoO65I | GGTNACC | 1 cut(s) | 449 |
| EcoRI | GAATTC | 1 cut(s) | 415 |
| EcoRII | CCWGG | 4 cut(s) | 249, 266, 341, 1346 |
| EcoRV | GATATC | 1 cut(s) | 1099 |
| EcoT14I | CCWWGG | 2 cut(s) | 979, 1319 |
| ErhI | CCWWGG | 2 cut(s) | 979, 1319 |
| Esp3I | CGTCTC | 1 cut(s) | 839 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1224, 1256 |
| FaqI | GGGAC | 1 cut(s) | 245 |
| FauI | CCCGC | 1 cut(s) | 68 |
| FbaI | TGATCA | 1 cut(s) | 40 |
| Fnu4HI | GCNGC | 2 cut(s) | 662, 869 |
| FokI | GGATG | 3 cut(s) | 205, 233, 1325 |
| Fsp4HI | GCNGC | 2 cut(s) | 662, 869 |
| FspBI | CTAG | 2 cut(s) | 293, 1148 |
| GlaI | GCGC | 1 cut(s) | 291 |
| GluI | GCNGC | 2 cut(s) | 662, 869 |
| HaeIII | GGCC | 3 cut(s) | 259, 1195, 1359 |
| HapII | CCGG | 4 cut(s) | 72, 517, 597, 925 |
| HgaI | GACGC | 1 cut(s) | 497 |
| HhaI | GCGC | 1 cut(s) | 292 |
| Hin6I | GCGC | 1 cut(s) | 290 |
| HinP1I | GCGC | 1 cut(s) | 290 |
| HincII | GTYRAC | 1 cut(s) | 183 |
| HindII | GTYRAC | 1 cut(s) | 183 |
| HindIII | AAGCTT | 4 cut(s) | 23, 788, 1052, 1305 |
| HinfI | GANTC | 2 cut(s) | 442, 530 |
| HpaI | GTTAAC | 1 cut(s) | 183 |
| HpaII | CCGG | 4 cut(s) | 72, 517, 597, 925 |
| HphI | GGTGA | 4 cut(s) | 35, 67, 365, 907 |
| Hpy166II | GTNNAC | 4 cut(s) | 58, 183, 540, 769 |
| Hpy188I | TCNGA | 6 cut(s) | 414, 677, 877, 931, 1109, 1344 |
| Hpy188III | TCNNGA | 3 cut(s) | 221, 624, 1181 |
| Hpy8I | GTNNAC | 4 cut(s) | 58, 183, 540, 769 |
| Hpy99I | CGWCG | 1 cut(s) | 391 |
| HpyAV | CCTTC | 6 cut(s) | 43, 402, 682, 882, 886, 1227 |
| HpyCH4III | ACNGT | 2 cut(s) | 363, 1213 |
| HpyCH4IV | ACGT | 1 cut(s) | 765 |
| HpyCH4V | TGCA | 5 cut(s) | 19, 366, 380, 586, 1088 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 289, 505 |
| HpyF3I | CTNAG | 3 cut(s) | 303, 495, 1043 |
| HpySE526I | ACGT | 1 cut(s) | 765 |
| HspAI | GCGC | 1 cut(s) | 290 |
| Ksp22I | TGATCA | 1 cut(s) | 40 |
| KspAI | GTTAAC | 1 cut(s) | 183 |
| Kzo9I | GATC | 1 cut(s) | 40 |
| LmnI | GCTCC | 2 cut(s) | 157, 1138 |
| Lsp1109I | GCAGC | 2 cut(s) | 673, 880 |
| MaeI | CTAG | 2 cut(s) | 293, 1148 |
| MaeII | ACGT | 1 cut(s) | 765 |
| MaeIII | GTNAC | 2 cut(s) | 449, 714 |
| MalI | GATC | 1 cut(s) | 42 |
| MboI | GATC | 1 cut(s) | 40 |
| MfeI | CAATTG | 1 cut(s) | 722 |
| MhlI | GDGCHC | 1 cut(s) | 334 |
| MlsI | TGGCCA | 1 cut(s) | 1195 |
| MluCI | AATT | 9 cut(s) | 87, 415, 430, 627, 652, 722, 751, 1073, 1299 |
| MluNI | TGGCCA | 1 cut(s) | 1195 |
| MlyI | GAGTC | 1 cut(s) | 539 |
| MmeI | TCCRAC | 4 cut(s) | 381, 979, 1232, 1264 |
| Mox20I | TGGCCA | 1 cut(s) | 1195 |
| MscI | TGGCCA | 1 cut(s) | 1195 |
| MseI | TTAA | 5 cut(s) | 182, 650, 1056, 1263, 1298 |
| MslI | CAYNNNNRTG | 1 cut(s) | 641 |
| Msp20I | TGGCCA | 1 cut(s) | 1195 |
| MspCI | CTTAAG | 1 cut(s) | 1055 |
| MspI | CCGG | 4 cut(s) | 72, 517, 597, 925 |
| MspR9I | CCNGG | 5 cut(s) | 251, 268, 343, 598, 1348 |
| MunI | CAATTG | 1 cut(s) | 722 |
| MvaI | CCWGG | 4 cut(s) | 251, 268, 343, 1348 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 289, 505 |
| NciI | CCSGG | 1 cut(s) | 598 |
| NcoI | CCATGG | 1 cut(s) | 1319 |
| NdeII | GATC | 1 cut(s) | 40 |
| NlaIV | GGNNCC | 2 cut(s) | 331, 603 |
| PagI | TCATGA | 1 cut(s) | 1180 |
| PceI | AGGCCT | 1 cut(s) | 259 |
| PfeI | GAWTC | 1 cut(s) | 442 |
| PfoI | TCCNGGA | 2 cut(s) | 249, 266 |
| PkrI | GCNGC | 2 cut(s) | 663, 870 |
| PleI | GAGTC | 1 cut(s) | 538 |
| PmaCI | CACGTG | 1 cut(s) | 766 |
| PmlI | CACGTG | 1 cut(s) | 766 |
| PpsI | GAGTC | 1 cut(s) | 538 |
| Ppu21I | YACGTR | 1 cut(s) | 766 |
| Psp6I | CCWGG | 4 cut(s) | 249, 266, 341, 1346 |
| PspCI | CACGTG | 1 cut(s) | 766 |
| PspEI | GGTNACC | 1 cut(s) | 449 |
| PspGI | CCWGG | 4 cut(s) | 249, 266, 341, 1346 |
| PspN4I | GGNNCC | 2 cut(s) | 331, 603 |
| PspPI | GGNCC | 3 cut(s) | 270, 403, 1357 |
| RsaI | GTAC | 6 cut(s) | 426, 502, 770, 862, 977, 1172 |
| RsaNI | GTAC | 6 cut(s) | 425, 501, 769, 861, 976, 1171 |
| RseI | CAYNNNNRTG | 1 cut(s) | 641 |
| SaqAI | TTAA | 5 cut(s) | 182, 650, 1056, 1263, 1298 |
| SatI | GCNGC | 2 cut(s) | 662, 869 |
| Sau3AI | GATC | 1 cut(s) | 40 |
| Sau96I | GGNCC | 3 cut(s) | 270, 403, 1357 |
| SchI | GAGTC | 1 cut(s) | 539 |
| ScrFI | CCNGG | 5 cut(s) | 251, 268, 343, 598, 1348 |
| SduI | GDGCHC | 1 cut(s) | 334 |
| SfcI | CTRYAG | 1 cut(s) | 990 |
| SinI | GGWCC | 2 cut(s) | 270, 403 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 641 |
| SmlI | CTYRAG | 3 cut(s) | 26, 791, 1055 |
| SmoI | CTYRAG | 3 cut(s) | 26, 791, 1055 |
| Sse9I | AATT | 9 cut(s) | 87, 415, 430, 627, 652, 722, 751, 1073, 1299 |
| SseBI | AGGCCT | 1 cut(s) | 259 |
| SsiI | CCGC | 2 cut(s) | 75, 155 |
| SspMI | CTAG | 2 cut(s) | 293, 1148 |
| StuI | AGGCCT | 1 cut(s) | 259 |
| StyD4I | CCNGG | 5 cut(s) | 249, 266, 341, 596, 1346 |
| StyI | CCWWGG | 2 cut(s) | 979, 1319 |
| TaaI | ACNGT | 2 cut(s) | 363, 1213 |
| TaiI | ACGT | 1 cut(s) | 768 |
| TaqI | TCGA | 5 cut(s) | 111, 121, 480, 623, 1336 |
| TasI | AATT | 9 cut(s) | 87, 415, 430, 627, 652, 722, 751, 1073, 1299 |
| TatI | WGTACW | 1 cut(s) | 768 |
| TfiI | GAWTC | 1 cut(s) | 442 |
| Tru1I | TTAA | 5 cut(s) | 182, 650, 1056, 1263, 1298 |
| Tru9I | TTAA | 5 cut(s) | 182, 650, 1056, 1263, 1298 |
| TseI | GCWGC | 2 cut(s) | 661, 868 |
| TspDTI | ATGAA | 5 cut(s) | 384, 434, 645, 800, 1014 |
| TspGWI | ACGGA | 1 cut(s) | 99 |
| Vha464I | CTTAAG | 1 cut(s) | 1055 |
| VpaK11BI | GGWCC | 2 cut(s) | 270, 403 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 50 |
| XapI | RAATTY | 2 cut(s) | 415, 652 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1255 |
| XspI | CTAG | 2 cut(s) | 293, 1148 |