ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 176 |
| AccI | GTMKAC | 1 cut(s) | 480 |
| AclWI | GGATC | 1 cut(s) | 445 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 176, 229 |
| AflIII | ACRYGT | 1 cut(s) | 368 |
| AgsI | TTSAA | 2 cut(s) | 56, 344 |
| AjnI | CCWGG | 2 cut(s) | 82, 483 |
| AluBI | AGCT | 1 cut(s) | 149 |
| AluI | AGCT | 1 cut(s) | 149 |
| AlwI | GGATC | 1 cut(s) | 445 |
| ApeKI | GCWGC | 5 cut(s) | 4, 61, 146, 391, 463 |
| AspS9I | GGNCC | 1 cut(s) | 80 |
| AsuC2I | CCSGG | 1 cut(s) | 14 |
| AsuHPI | GGTGA | 1 cut(s) | 191 |
| AvaII | GGWCC | 1 cut(s) | 80 |
| BbvI | GCAGC | 5 cut(s) | 16, 73, 158, 403, 450 |
| BccI | CCATC | 1 cut(s) | 124 |
| BceAI | ACGGC | 1 cut(s) | 81 |
| BciT130I | CCWGG | 2 cut(s) | 84, 485 |
| BcnI | CCSGG | 1 cut(s) | 14 |
| BfaI | CTAG | 2 cut(s) | 101, 150 |
| BfmI | CTRYAG | 1 cut(s) | 144 |
| BisI | GCNGC | 5 cut(s) | 5, 62, 147, 392, 464 |
| BlsI | GCNGC | 5 cut(s) | 6, 63, 148, 393, 465 |
| Bme1390I | CCNGG | 3 cut(s) | 14, 84, 485 |
| Bme18I | GGWCC | 1 cut(s) | 80 |
| BmgT120I | GGNCC | 1 cut(s) | 80 |
| BmrFI | CCNGG | 3 cut(s) | 14, 84, 485 |
| BpmI | CTGGAG | 1 cut(s) | 153 |
| BpuMI | CCSGG | 1 cut(s) | 14 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 176, 229 |
| Bse1I | ACTGG | 2 cut(s) | 170, 247 |
| BseBI | CCWGG | 2 cut(s) | 84, 485 |
| BseGI | GGATG | 2 cut(s) | 135, 139 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 176, 229 |
| BseMII | CTCAG | 1 cut(s) | 488 |
| BseNI | ACTGG | 2 cut(s) | 170, 247 |
| BseXI | GCAGC | 5 cut(s) | 16, 73, 158, 403, 450 |
| BsiSI | CCGG | 1 cut(s) | 13 |
| BslFI | GGGAC | 1 cut(s) | 452 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 176, 229 |
| BsmFI | GGGAC | 1 cut(s) | 452 |
| Bsp143I | GATC | 2 cut(s) | 34, 450 |
| BspCNI | CTCAG | 1 cut(s) | 487 |
| BspMAI | CTGCAG | 1 cut(s) | 148 |
| BspPI | GGATC | 1 cut(s) | 445 |
| BsrI | ACTGG | 2 cut(s) | 170, 247 |
| BssMI | GATC | 2 cut(s) | 34, 450 |
| BssNAI | GTATAC | 1 cut(s) | 481 |
| Bst1107I | GTATAC | 1 cut(s) | 481 |
| Bst2UI | CCWGG | 2 cut(s) | 84, 485 |
| Bst4CI | ACNGT | 1 cut(s) | 229 |
| BstDEI | CTNAG | 1 cut(s) | 474 |
| BstEII | GGTNACC | 1 cut(s) | 179 |
| BstF5I | GGATG | 2 cut(s) | 135, 139 |
| BstKTI | GATC | 2 cut(s) | 37, 453 |
| BstMBI | GATC | 2 cut(s) | 34, 450 |
| BstNI | CCWGG | 2 cut(s) | 84, 485 |
| BstNSI | RCATGY | 2 cut(s) | 281, 372 |
| BstPI | GGTNACC | 1 cut(s) | 179 |
| BstSCI | CCNGG | 3 cut(s) | 12, 82, 483 |
| BstSFI | CTRYAG | 1 cut(s) | 144 |
| BstV1I | GCAGC | 5 cut(s) | 16, 73, 158, 403, 450 |
| BstX2I | RGATCY | 1 cut(s) | 450 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 72 |
| BstYI | RGATCY | 1 cut(s) | 450 |
| BstZ17I | GTATAC | 1 cut(s) | 481 |
| BtsCI | GGATG | 2 cut(s) | 135, 139 |
| BtsI | GCAGTG | 1 cut(s) | 141 |
| BtsIMutI | CAGTG | 3 cut(s) | 141, 225, 392 |
| Cfr13I | GGNCC | 1 cut(s) | 80 |
| CseI | GACGC | 1 cut(s) | 290 |
| CviAII | CATG | 5 cut(s) | 72, 126, 176, 278, 369 |
| CviJI | RGCY | 5 cut(s) | 7, 64, 96, 116, 149 |
| CviKI_1 | RGCY | 5 cut(s) | 7, 64, 96, 116, 149 |
| DdeI | CTNAG | 1 cut(s) | 474 |
| DpnI | GATC | 2 cut(s) | 36, 452 |
| DpnII | GATC | 2 cut(s) | 34, 450 |
| Eco47I | GGWCC | 1 cut(s) | 80 |
| Eco91I | GGTNACC | 1 cut(s) | 179 |
| EcoO65I | GGTNACC | 1 cut(s) | 179 |
| EcoRII | CCWGG | 2 cut(s) | 82, 483 |
| FaeI | CATG | 5 cut(s) | 75, 129, 179, 281, 372 |
| FaqI | GGGAC | 1 cut(s) | 452 |
| FatI | CATG | 5 cut(s) | 71, 125, 175, 277, 368 |
| FblI | GTMKAC | 1 cut(s) | 480 |
| Fnu4HI | GCNGC | 5 cut(s) | 5, 62, 147, 392, 464 |
| FokI | GGATG | 2 cut(s) | 142, 146 |
| Fsp4HI | GCNGC | 5 cut(s) | 5, 62, 147, 392, 464 |
| FspBI | CTAG | 2 cut(s) | 101, 150 |
| GluI | GCNGC | 5 cut(s) | 5, 62, 147, 392, 464 |
| GsuI | CTGGAG | 1 cut(s) | 153 |
| HapII | CCGG | 1 cut(s) | 13 |
| HgaI | GACGC | 1 cut(s) | 290 |
| Hin1II | CATG | 5 cut(s) | 75, 129, 179, 281, 372 |
| HinfI | GANTC | 3 cut(s) | 243, 415, 472 |
| HpaII | CCGG | 1 cut(s) | 13 |
| HphI | GGTGA | 1 cut(s) | 191 |
| Hpy166II | GTNNAC | 2 cut(s) | 141, 481 |
| Hpy188I | TCNGA | 1 cut(s) | 28 |
| Hpy188III | TCNNGA | 5 cut(s) | 101, 268, 290, 349, 419 |
| Hpy8I | GTNNAC | 2 cut(s) | 141, 481 |
| Hpy99I | CGWCG | 2 cut(s) | 240, 243 |
| HpyAV | CCTTC | 2 cut(s) | 19, 320 |
| HpyCH4III | ACNGT | 1 cut(s) | 229 |
| HpyCH4IV | ACGT | 1 cut(s) | 235 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 91, 146, 160, 277, 364, 448 |
| HpyF3I | CTNAG | 1 cut(s) | 474 |
| HpySE526I | ACGT | 1 cut(s) | 235 |
| Hsp92II | CATG | 5 cut(s) | 75, 129, 179, 281, 372 |
| Kzo9I | GATC | 2 cut(s) | 34, 450 |
| LpnPI | CCDG | 9 cut(s) | 26, 69, 96, 183, 253, 260, 290, 461, 470 |
| Lsp1109I | GCAGC | 5 cut(s) | 16, 73, 158, 403, 450 |
| MaeI | CTAG | 2 cut(s) | 101, 150 |
| MaeII | ACGT | 1 cut(s) | 235 |
| MaeIII | GTNAC | 2 cut(s) | 179, 397 |
| MalI | GATC | 2 cut(s) | 36, 452 |
| MboI | GATC | 2 cut(s) | 34, 450 |
| MboII | GAAGA | 2 cut(s) | 364, 367 |
| MflI | RGATCY | 1 cut(s) | 450 |
| MluCI | AATT | 2 cut(s) | 192, 443 |
| MlyI | GAGTC | 2 cut(s) | 424, 466 |
| MmeI | TCCRAC | 1 cut(s) | 6 |
| MnlI | CCTC | 2 cut(s) | 177, 481 |
| MslI | CAYNNNNRTG | 1 cut(s) | 70 |
| MspI | CCGG | 1 cut(s) | 13 |
| MspR9I | CCNGG | 3 cut(s) | 14, 84, 485 |
| MvaI | CCWGG | 2 cut(s) | 84, 485 |
| NciI | CCSGG | 1 cut(s) | 14 |
| NdeII | GATC | 2 cut(s) | 34, 450 |
| NlaIII | CATG | 5 cut(s) | 75, 129, 179, 281, 372 |
| NmuCI | GTSAC | 2 cut(s) | 179, 397 |
| NspI | RCATGY | 2 cut(s) | 281, 372 |
| PciI | ACATGT | 1 cut(s) | 368 |
| PfeI | GAWTC | 1 cut(s) | 243 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 176 |
| PfoI | TCCNGGA | 1 cut(s) | 12 |
| PkrI | GCNGC | 5 cut(s) | 6, 63, 148, 393, 465 |
| PleI | GAGTC | 2 cut(s) | 423, 466 |
| PpsI | GAGTC | 2 cut(s) | 423, 466 |
| PscI | ACATGT | 1 cut(s) | 368 |
| Psp6I | CCWGG | 2 cut(s) | 82, 483 |
| PspEI | GGTNACC | 1 cut(s) | 179 |
| PspGI | CCWGG | 2 cut(s) | 82, 483 |
| PspPI | GGNCC | 1 cut(s) | 80 |
| PstI | CTGCAG | 1 cut(s) | 148 |
| PsuI | RGATCY | 1 cut(s) | 450 |
| RseI | CAYNNNNRTG | 1 cut(s) | 70 |
| SatI | GCNGC | 5 cut(s) | 5, 62, 147, 392, 464 |
| Sau3AI | GATC | 2 cut(s) | 34, 450 |
| Sau96I | GGNCC | 1 cut(s) | 80 |
| SchI | GAGTC | 2 cut(s) | 424, 466 |
| ScrFI | CCNGG | 3 cut(s) | 14, 84, 485 |
| SetI | ASST | 6 cut(s) | 88, 151, 205, 238, 331, 480 |
| SfcI | CTRYAG | 1 cut(s) | 144 |
| SinI | GGWCC | 1 cut(s) | 80 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 70 |
| Sse9I | AATT | 2 cut(s) | 192, 443 |
| SspMI | CTAG | 2 cut(s) | 101, 150 |
| StyD4I | CCNGG | 3 cut(s) | 12, 82, 483 |
| TaaI | ACNGT | 1 cut(s) | 229 |
| TaiI | ACGT | 1 cut(s) | 238 |
| TaqI | TCGA | 1 cut(s) | 241 |
| TasI | AATT | 2 cut(s) | 192, 443 |
| TfiI | GAWTC | 1 cut(s) | 243 |
| TscAI | CASTG | 3 cut(s) | 148, 232, 392 |
| TseFI | GTSAC | 2 cut(s) | 179, 397 |
| TseI | GCWGC | 5 cut(s) | 4, 61, 146, 391, 463 |
| Tsp45I | GTSAC | 2 cut(s) | 179, 397 |
| TspDTI | ATGAA | 2 cut(s) | 164, 197 |
| TspRI | CASTG | 3 cut(s) | 148, 232, 392 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 176 |
| VpaK11BI | GGWCC | 1 cut(s) | 80 |
| XbaI | TCTAGA | 1 cut(s) | 100 |
| XceI | RCATGY | 2 cut(s) | 281, 372 |
| XmiI | GTMKAC | 1 cut(s) | 480 |
| XspI | CTAG | 2 cut(s) | 101, 150 |