Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 548 |
| AccII | CGCG | 2 cut(s) | 188, 466 |
| AciI | CCGC | 6 cut(s) | 188, 201, 304, 464, 512, 602 |
| AcuI | CTGAAG | 1 cut(s) | 80 |
| AdeI | CACNNNGTG | 1 cut(s) | 53 |
| AfaI | GTAC | 1 cut(s) | 624 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 403, 803 |
| AflIII | ACRYGT | 1 cut(s) | 6 |
| AgeI | ACCGGT | 1 cut(s) | 796 |
| AgsI | TTSAA | 5 cut(s) | 107, 693, 737, 751, 839 |
| AjiI | CACGTC | 1 cut(s) | 53 |
| AjnI | CCWGG | 2 cut(s) | 154, 863 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 563, 595 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 515, 547 |
| AluBI | AGCT | 1 cut(s) | 341 |
| AluI | AGCT | 1 cut(s) | 341 |
| Alw21I | GWGCWC | 1 cut(s) | 58 |
| Alw26I | GTCTC | 2 cut(s) | 560, 829 |
| Ama87I | CYCGRG | 1 cut(s) | 630 |
| ApeKI | GCWGC | 5 cut(s) | 247, 341, 781, 790, 808 |
| AsiGI | ACCGGT | 1 cut(s) | 796 |
| AspA2I | CCTAGG | 1 cut(s) | 526 |
| AspLEI | GCGC | 1 cut(s) | 188 |
| AspS9I | GGNCC | 4 cut(s) | 235, 523, 661, 775 |
| AsuC2I | CCSGG | 2 cut(s) | 336, 494 |
| AsuHPI | GGTGA | 2 cut(s) | 302, 896 |
| AvaI | CYCGRG | 1 cut(s) | 630 |
| AvaII | GGWCC | 4 cut(s) | 235, 523, 661, 775 |
| AvrII | CCTAGG | 1 cut(s) | 526 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 701, 733 |
| Bbv12I | GWGCWC | 1 cut(s) | 58 |
| BbvI | GCAGC | 5 cut(s) | 259, 328, 793, 795, 802 |
| BccI | CCATC | 2 cut(s) | 287, 898 |
| BceAI | ACGGC | 2 cut(s) | 273, 615 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 129, 163 |
| BciT130I | CCWGG | 2 cut(s) | 156, 865 |
| BciVI | GTATCC | 1 cut(s) | 490 |
| BclI | TGATCA | 1 cut(s) | 163 |
| BcnI | CCSGG | 2 cut(s) | 336, 494 |
| BcoDI | GTCTC | 2 cut(s) | 560, 829 |
| BfaI | CTAG | 2 cut(s) | 527, 857 |
| BfuI | GTATCC | 1 cut(s) | 490 |
| BglII | AGATCT | 1 cut(s) | 63 |
| BisI | GCNGC | 6 cut(s) | 248, 342, 603, 782, 791, 809 |
| BlnI | CCTAGG | 1 cut(s) | 526 |
| BlsI | GCNGC | 6 cut(s) | 249, 343, 604, 783, 792, 810 |
| Bme1390I | CCNGG | 4 cut(s) | 156, 336, 494, 865 |
| Bme18I | GGWCC | 4 cut(s) | 235, 523, 661, 775 |
| BmeT110I | CYCGRG | 1 cut(s) | 630 |
| BmgBI | CACGTC | 1 cut(s) | 53 |
| BmgT120I | GGNCC | 4 cut(s) | 235, 523, 661, 775 |
| BmiI | GGNNCC | 1 cut(s) | 533 |
| BmrFI | CCNGG | 4 cut(s) | 156, 336, 494, 865 |
| BmsI | GCATC | 3 cut(s) | 137, 449, 850 |
| BpuMI | CCSGG | 2 cut(s) | 336, 494 |
| BsaBI | GATNNNNATC | 1 cut(s) | 68 |
| BsaI | GGTCTC | 1 cut(s) | 829 |
| BsaJI | CCNNGG | 5 cut(s) | 154, 155, 401, 526, 535 |
| BsaWI | WCCGGW | 1 cut(s) | 796 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 403, 803 |
| Bse118I | RCCGGY | 1 cut(s) | 796 |
| Bse1I | ACTGG | 2 cut(s) | 96, 456 |
| Bse3DI | GCAATG | 1 cut(s) | 791 |
| Bse8I | GATNNNNATC | 1 cut(s) | 68 |
| BseBI | CCWGG | 2 cut(s) | 156, 865 |
| BseDI | CCNNGG | 5 cut(s) | 154, 155, 401, 526, 535 |
| BseGI | GGATG | 3 cut(s) | 133, 460, 767 |
| BseJI | GATNNNNATC | 1 cut(s) | 68 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 403, 803 |
| BseMI | GCAATG | 1 cut(s) | 791 |
| BseMII | CTCAG | 2 cut(s) | 385, 555 |
| BseNI | ACTGG | 2 cut(s) | 96, 456 |
| BseXI | GCAGC | 5 cut(s) | 259, 328, 793, 795, 802 |
| Bsh1236I | CGCG | 2 cut(s) | 188, 466 |
| Bsh1285I | CGRYCG | 2 cut(s) | 470, 797 |
| BshTI | ACCGGT | 1 cut(s) | 796 |
| BsiEI | CGRYCG | 2 cut(s) | 470, 797 |
| BsiHKAI | GWGCWC | 1 cut(s) | 58 |
| BsiHKCI | CYCGRG | 1 cut(s) | 630 |
| BsiSI | CCGG | 3 cut(s) | 335, 493, 797 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 403, 803 |
| BsmAI | GTCTC | 2 cut(s) | 560, 829 |
| BsmBI | CGTCTC | 1 cut(s) | 560 |
| Bso31I | GGTCTC | 1 cut(s) | 829 |
| BsoBI | CYCGRG | 1 cut(s) | 630 |
| Bsp1286I | GDGCHC | 1 cut(s) | 58 |
| Bsp1407I | TGTACA | 1 cut(s) | 622 |
| Bsp143I | GATC | 3 cut(s) | 63, 163, 467 |
| Bsp19I | CCATGG | 1 cut(s) | 535 |
| BspACI | CCGC | 6 cut(s) | 188, 201, 304, 464, 512, 602 |
| BspCNI | CTCAG | 2 cut(s) | 384, 556 |
| BspFNI | CGCG | 2 cut(s) | 188, 466 |
| BspLI | GGNNCC | 1 cut(s) | 533 |
| BspTNI | GGTCTC | 1 cut(s) | 829 |
| BsrDI | GCAATG | 1 cut(s) | 791 |
| BsrFI | RCCGGY | 1 cut(s) | 796 |
| BsrGI | TGTACA | 1 cut(s) | 622 |
| BsrI | ACTGG | 2 cut(s) | 96, 456 |
| BssAI | RCCGGY | 1 cut(s) | 796 |
| BssECI | CCNNGG | 5 cut(s) | 154, 155, 401, 526, 535 |
| BssMI | GATC | 3 cut(s) | 63, 163, 467 |
| BssNAI | GTATAC | 1 cut(s) | 549 |
| BssT1I | CCWWGG | 2 cut(s) | 526, 535 |
| Bst1107I | GTATAC | 1 cut(s) | 549 |
| Bst2UI | CCWGG | 2 cut(s) | 156, 865 |
| Bst4CI | ACNGT | 2 cut(s) | 402, 775 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 860 |
| BstAUI | TGTACA | 1 cut(s) | 622 |
| BstC8I | GCNNGC | 1 cut(s) | 199 |
| BstDEI | CTNAG | 2 cut(s) | 371, 564 |
| BstDSI | CCRYGG | 2 cut(s) | 401, 535 |
| BstF5I | GGATG | 3 cut(s) | 133, 460, 767 |
| BstFNI | CGCG | 2 cut(s) | 188, 466 |
| BstHHI | GCGC | 1 cut(s) | 188 |
| BstKTI | GATC | 3 cut(s) | 66, 166, 470 |
| BstMAI | GTCTC | 2 cut(s) | 560, 829 |
| BstMBI | GATC | 3 cut(s) | 63, 163, 467 |
| BstMCI | CGRYCG | 2 cut(s) | 470, 797 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 194, 207, 602, 787, 790, 860 |
| BstNI | CCWGG | 2 cut(s) | 156, 865 |
| BstSCI | CCNGG | 4 cut(s) | 154, 334, 492, 863 |
| BstUI | CGCG | 2 cut(s) | 188, 466 |
| BstV1I | GCAGC | 5 cut(s) | 259, 328, 793, 795, 802 |
| BstX2I | RGATCY | 1 cut(s) | 63 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 485 |
| BstYI | RGATCY | 1 cut(s) | 63 |
| BstZ17I | GTATAC | 1 cut(s) | 549 |
| BsuI | GTATCC | 1 cut(s) | 490 |
| BtgI | CCRYGG | 2 cut(s) | 401, 535 |
| BtrI | CACGTC | 1 cut(s) | 53 |
| BtsCI | GGATG | 3 cut(s) | 133, 460, 767 |
| BtsI | GCAGTG | 1 cut(s) | 282 |
| BtsIMutI | CAGTG | 1 cut(s) | 282 |
| Cac8I | GCNNGC | 1 cut(s) | 199 |
| CfoI | GCGC | 1 cut(s) | 188 |
| Cfr10I | RCCGGY | 1 cut(s) | 796 |
| Cfr13I | GGNCC | 4 cut(s) | 235, 523, 661, 775 |
| Csp6I | GTAC | 1 cut(s) | 623 |
| CspAI | ACCGGT | 1 cut(s) | 796 |
| CviAII | CATG | 7 cut(s) | 167, 485, 536, 552, 606, 755, 767 |
| CviJI | RGCY | 8 cut(s) | 197, 210, 250, 260, 341, 377, 396, 808 |
| CviKI_1 | RGCY | 8 cut(s) | 197, 210, 250, 260, 341, 377, 396, 808 |
| CviQI | GTAC | 1 cut(s) | 623 |
| DdeI | CTNAG | 2 cut(s) | 371, 564 |
| DpnI | GATC | 3 cut(s) | 65, 165, 469 |
| DpnII | GATC | 3 cut(s) | 63, 163, 467 |
| DraIII | CACNNNGTG | 1 cut(s) | 53 |
| Eco130I | CCWWGG | 2 cut(s) | 526, 535 |
| Eco31I | GGTCTC | 1 cut(s) | 829 |
| Eco47I | GGWCC | 4 cut(s) | 235, 523, 661, 775 |
| Eco57I | CTGAAG | 1 cut(s) | 80 |
| Eco88I | CYCGRG | 1 cut(s) | 630 |
| EcoRII | CCWGG | 2 cut(s) | 154, 863 |
| EcoT14I | CCWWGG | 2 cut(s) | 526, 535 |
| EcoT22I | ATGCAT | 1 cut(s) | 486 |
| ErhI | CCWWGG | 2 cut(s) | 526, 535 |
| Esp3I | CGTCTC | 1 cut(s) | 560 |
| FaeI | CATG | 7 cut(s) | 170, 488, 539, 555, 609, 758, 770 |
| FatI | CATG | 7 cut(s) | 166, 484, 535, 551, 605, 754, 766 |
| FauI | CCCGC | 1 cut(s) | 181 |
| FbaI | TGATCA | 1 cut(s) | 163 |
| FblI | GTMKAC | 1 cut(s) | 548 |
| Fnu4HI | GCNGC | 6 cut(s) | 248, 342, 603, 782, 791, 809 |
| FokI | GGATG | 3 cut(s) | 140, 467, 774 |
| Fsp4HI | GCNGC | 6 cut(s) | 248, 342, 603, 782, 791, 809 |
| FspBI | CTAG | 2 cut(s) | 527, 857 |
| GlaI | GCGC | 1 cut(s) | 187 |
| GluI | GCNGC | 6 cut(s) | 248, 342, 603, 782, 791, 809 |
| HapII | CCGG | 3 cut(s) | 335, 493, 797 |
| HhaI | GCGC | 1 cut(s) | 188 |
| Hin1II | CATG | 7 cut(s) | 170, 488, 539, 555, 609, 758, 770 |
| Hin6I | GCGC | 1 cut(s) | 186 |
| HinP1I | GCGC | 1 cut(s) | 186 |
| HinfI | GANTC | 4 cut(s) | 312, 356, 560, 737 |
| HpaII | CCGG | 3 cut(s) | 335, 493, 797 |
| HphI | GGTGA | 2 cut(s) | 302, 896 |
| Hpy166II | GTNNAC | 3 cut(s) | 523, 549, 625 |
| Hpy188I | TCNGA | 7 cut(s) | 60, 119, 445, 472, 565, 651, 661 |
| Hpy188III | TCNNGA | 4 cut(s) | 16, 100, 706, 826 |
| Hpy8I | GTNNAC | 3 cut(s) | 523, 549, 625 |
| Hpy99I | CGWCG | 1 cut(s) | 54 |
| HpyAV | CCTTC | 5 cut(s) | 51, 226, 261, 281, 565 |
| HpyCH4III | ACNGT | 2 cut(s) | 402, 775 |
| HpyCH4IV | ACGT | 3 cut(s) | 6, 52, 500 |
| HpyCH4V | TGCA | 7 cut(s) | 36, 150, 170, 275, 330, 484, 854 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 194, 207, 602, 787, 790, 860 |
| HpyF3I | CTNAG | 2 cut(s) | 371, 564 |
| HpySE526I | ACGT | 3 cut(s) | 6, 52, 500 |
| Hsp92II | CATG | 7 cut(s) | 170, 488, 539, 555, 609, 758, 770 |
| HspAI | GCGC | 1 cut(s) | 186 |
| Ksp22I | TGATCA | 1 cut(s) | 163 |
| Kzo9I | GATC | 3 cut(s) | 63, 163, 467 |
| LmnI | GCTCC | 1 cut(s) | 338 |
| Lsp1109I | GCAGC | 5 cut(s) | 259, 328, 793, 795, 802 |
| LweI | GCATC | 3 cut(s) | 137, 449, 850 |
| MaeI | CTAG | 2 cut(s) | 527, 857 |
| MaeII | ACGT | 3 cut(s) | 6, 52, 500 |
| MaeIII | GTNAC | 2 cut(s) | 557, 769 |
| MalI | GATC | 3 cut(s) | 65, 165, 469 |
| MboI | GATC | 3 cut(s) | 63, 163, 467 |
| MboII | GAAGA | 3 cut(s) | 73, 841, 844 |
| MflI | RGATCY | 1 cut(s) | 63 |
| MhlI | GDGCHC | 1 cut(s) | 58 |
| MluCI | AATT | 3 cut(s) | 19, 515, 693 |
| MlyI | GAGTC | 1 cut(s) | 554 |
| MmeI | TCCRAC | 3 cut(s) | 561, 591, 639 |
| MnlI | CCTC | 5 cut(s) | 118, 166, 277, 657, 751 |
| Mph1103I | ATGCAT | 1 cut(s) | 486 |
| MseI | TTAA | 2 cut(s) | 68, 423 |
| MspI | CCGG | 3 cut(s) | 335, 493, 797 |
| MspR9I | CCNGG | 4 cut(s) | 156, 336, 494, 865 |
| MvaI | CCWGG | 2 cut(s) | 156, 865 |
| MvnI | CGCG | 2 cut(s) | 188, 466 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 194, 207, 602, 787, 790, 860 |
| NciI | CCSGG | 2 cut(s) | 336, 494 |
| NcoI | CCATGG | 1 cut(s) | 535 |
| NdeII | GATC | 3 cut(s) | 63, 163, 467 |
| NlaIII | CATG | 7 cut(s) | 170, 488, 539, 555, 609, 758, 770 |
| NlaIV | GGNNCC | 1 cut(s) | 533 |
| NmuCI | GTSAC | 2 cut(s) | 557, 769 |
| NsiI | ATGCAT | 1 cut(s) | 486 |
| PasI | CCCWGGG | 1 cut(s) | 155 |
| PfeI | GAWTC | 3 cut(s) | 312, 356, 737 |
| PfoI | TCCNGGA | 2 cut(s) | 334, 492 |
| PinAI | ACCGGT | 1 cut(s) | 796 |
| PkrI | GCNGC | 6 cut(s) | 249, 343, 604, 783, 792, 810 |
| Ple19I | CGATCG | 1 cut(s) | 470 |
| PleI | GAGTC | 1 cut(s) | 554 |
| PpsI | GAGTC | 1 cut(s) | 554 |
| Psp6I | CCWGG | 2 cut(s) | 154, 863 |
| PspGI | CCWGG | 2 cut(s) | 154, 863 |
| PspN4I | GGNNCC | 1 cut(s) | 533 |
| PspPI | GGNCC | 4 cut(s) | 235, 523, 661, 775 |
| PsuI | RGATCY | 1 cut(s) | 63 |
| PvuI | CGATCG | 1 cut(s) | 470 |
| RsaI | GTAC | 1 cut(s) | 624 |
| RsaNI | GTAC | 1 cut(s) | 623 |
| SaqAI | TTAA | 2 cut(s) | 68, 423 |
| SatI | GCNGC | 6 cut(s) | 248, 342, 603, 782, 791, 809 |
| Sau3AI | GATC | 3 cut(s) | 63, 163, 467 |
| Sau96I | GGNCC | 4 cut(s) | 235, 523, 661, 775 |
| SchI | GAGTC | 1 cut(s) | 554 |
| ScrFI | CCNGG | 4 cut(s) | 156, 336, 494, 865 |
| SduI | GDGCHC | 1 cut(s) | 58 |
| SfaNI | GCATC | 3 cut(s) | 137, 449, 850 |
| SinI | GGWCC | 4 cut(s) | 235, 523, 661, 775 |
| Sse9I | AATT | 3 cut(s) | 19, 515, 693 |
| SsiI | CCGC | 6 cut(s) | 188, 201, 304, 464, 512, 602 |
| SspMI | CTAG | 2 cut(s) | 527, 857 |
| StyD4I | CCNGG | 4 cut(s) | 154, 334, 492, 863 |
| StyI | CCWWGG | 2 cut(s) | 526, 535 |
| TaaI | ACNGT | 2 cut(s) | 402, 775 |
| TaiI | ACGT | 3 cut(s) | 9, 55, 503 |
| TaqI | TCGA | 2 cut(s) | 135, 827 |
| TasI | AATT | 3 cut(s) | 19, 515, 693 |
| TatI | WGTACW | 1 cut(s) | 622 |
| TauI | GCSGC | 1 cut(s) | 605 |
| TfiI | GAWTC | 3 cut(s) | 312, 356, 737 |
| Tru1I | TTAA | 2 cut(s) | 68, 423 |
| Tru9I | TTAA | 2 cut(s) | 68, 423 |
| TscAI | CASTG | 1 cut(s) | 282 |
| TseFI | GTSAC | 2 cut(s) | 557, 769 |
| TseI | GCWGC | 5 cut(s) | 247, 341, 781, 790, 808 |
| Tsp45I | GTSAC | 2 cut(s) | 557, 769 |
| TspDTI | ATGAA | 3 cut(s) | 17, 245, 629 |
| TspRI | CASTG | 1 cut(s) | 282 |
| VpaK11BI | GGWCC | 4 cut(s) | 235, 523, 661, 775 |
| XmaJI | CCTAGG | 1 cut(s) | 526 |
| XmiI | GTMKAC | 1 cut(s) | 548 |
| XspI | CTAG | 2 cut(s) | 527, 857 |
| Zsp2I | ATGCAT | 1 cut(s) | 486 |