Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 368 |
| AccB1I | GGYRCC | 1 cut(s) | 461 |
| AclWI | GGATC | 1 cut(s) | 247 |
| AcsI | RAATTY | 1 cut(s) | 137 |
| AcyI | GRCGYC | 1 cut(s) | 365 |
| AfaI | GTAC | 2 cut(s) | 410, 468 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 533 |
| AgsI | TTSAA | 3 cut(s) | 192, 387, 555 |
| AjnI | CCWGG | 1 cut(s) | 145 |
| AleI | CACNNNNGTG | 1 cut(s) | 53 |
| AluBI | AGCT | 1 cut(s) | 510 |
| AluI | AGCT | 1 cut(s) | 510 |
| Alw26I | GTCTC | 4 cut(s) | 25, 232, 252, 270 |
| AlwI | GGATC | 1 cut(s) | 247 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 256 |
| AoxI | GGCC | 1 cut(s) | 143 |
| ApeKI | GCWGC | 2 cut(s) | 15, 175 |
| ApoI | RAATTY | 1 cut(s) | 137 |
| AsuC2I | CCSGG | 1 cut(s) | 505 |
| AsuHPI | GGTGA | 1 cut(s) | 430 |
| BaeGI | GKGCMC | 1 cut(s) | 464 |
| BanI | GGYRCC | 1 cut(s) | 461 |
| BauI | CACGAG | 1 cut(s) | 49 |
| BbvI | GCAGC | 2 cut(s) | 27, 162 |
| BccI | CCATC | 3 cut(s) | 349, 398, 415 |
| BciT130I | CCWGG | 1 cut(s) | 147 |
| BcnI | CCSGG | 1 cut(s) | 505 |
| BcoDI | GTCTC | 4 cut(s) | 25, 232, 252, 270 |
| BisI | GCNGC | 2 cut(s) | 16, 176 |
| BlsI | GCNGC | 2 cut(s) | 17, 177 |
| Bme1390I | CCNGG | 2 cut(s) | 147, 505 |
| BmiI | GGNNCC | 1 cut(s) | 463 |
| BmrFI | CCNGG | 2 cut(s) | 147, 505 |
| BmsI | GCATC | 3 cut(s) | 162, 170, 368 |
| BoxI | GACNNNNGTC | 1 cut(s) | 244 |
| BpmI | CTGGAG | 2 cut(s) | 301, 369 |
| BpuEI | CTTGAG | 1 cut(s) | 252 |
| BpuMI | CCSGG | 1 cut(s) | 505 |
| BsaHI | GRCGYC | 1 cut(s) | 365 |
| BsaI | GGTCTC | 1 cut(s) | 252 |
| BsaJI | CCNNGG | 1 cut(s) | 532 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 274, 304 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 533 |
| Bse1I | ACTGG | 3 cut(s) | 284, 453, 490 |
| Bse3DI | GCAATG | 1 cut(s) | 174 |
| BseBI | CCWGG | 1 cut(s) | 147 |
| BseDI | CCNNGG | 1 cut(s) | 532 |
| BseGI | GGATG | 1 cut(s) | 213 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 533 |
| BseMI | GCAATG | 1 cut(s) | 174 |
| BseMII | CTCAG | 2 cut(s) | 256, 263 |
| BseNI | ACTGG | 3 cut(s) | 284, 453, 490 |
| BseRI | GAGGAG | 1 cut(s) | 490 |
| BseSI | GKGCMC | 1 cut(s) | 464 |
| BseXI | GCAGC | 2 cut(s) | 27, 162 |
| BshFI | GGCC | 1 cut(s) | 145 |
| BshNI | GGYRCC | 1 cut(s) | 461 |
| BsiSI | CCGG | 2 cut(s) | 12, 504 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 533 |
| BsmAI | GTCTC | 4 cut(s) | 25, 232, 252, 270 |
| BsmBI | CGTCTC | 1 cut(s) | 232 |
| BsnI | GGCC | 1 cut(s) | 145 |
| Bso31I | GGTCTC | 1 cut(s) | 252 |
| Bsp1286I | GDGCHC | 1 cut(s) | 464 |
| Bsp143I | GATC | 1 cut(s) | 252 |
| BspANI | GGCC | 1 cut(s) | 145 |
| BspCNI | CTCAG | 2 cut(s) | 257, 262 |
| BspLI | GGNNCC | 1 cut(s) | 463 |
| BspPI | GGATC | 1 cut(s) | 247 |
| BspT107I | GGYRCC | 1 cut(s) | 461 |
| BspTNI | GGTCTC | 1 cut(s) | 252 |
| BsrDI | GCAATG | 1 cut(s) | 174 |
| BsrI | ACTGG | 3 cut(s) | 284, 453, 490 |
| BssECI | CCNNGG | 1 cut(s) | 532 |
| BssMI | GATC | 1 cut(s) | 252 |
| BssNI | GRCGYC | 1 cut(s) | 365 |
| BssSI | CACGAG | 1 cut(s) | 49 |
| BssT1I | CCWWGG | 1 cut(s) | 532 |
| Bst2BI | CACGAG | 1 cut(s) | 49 |
| Bst2UI | CCWGG | 1 cut(s) | 147 |
| Bst4CI | ACNGT | 4 cut(s) | 125, 301, 466, 540 |
| BstACI | GRCGYC | 1 cut(s) | 365 |
| BstC8I | GCNNGC | 1 cut(s) | 517 |
| BstDEI | CTNAG | 2 cut(s) | 249, 265 |
| BstF5I | GGATG | 1 cut(s) | 213 |
| BstKTI | GATC | 1 cut(s) | 255 |
| BstMAI | GTCTC | 4 cut(s) | 25, 232, 252, 270 |
| BstMBI | GATC | 1 cut(s) | 252 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 21, 516 |
| BstNI | CCWGG | 1 cut(s) | 147 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 244 |
| BstSCI | CCNGG | 2 cut(s) | 145, 503 |
| BstSLI | GKGCMC | 1 cut(s) | 464 |
| BstV1I | GCAGC | 2 cut(s) | 27, 162 |
| BstX2I | RGATCY | 1 cut(s) | 252 |
| BstYI | RGATCY | 1 cut(s) | 252 |
| BsuRI | GGCC | 1 cut(s) | 145 |
| BtgZI | GCGATG | 2 cut(s) | 193, 368 |
| BtsCI | GGATG | 1 cut(s) | 213 |
| BtsIMutI | CAGTG | 1 cut(s) | 483 |
| Cac8I | GCNNGC | 1 cut(s) | 517 |
| CaiI | CAGNNNCTG | 1 cut(s) | 256 |
| Csp6I | GTAC | 2 cut(s) | 409, 467 |
| CviAII | CATG | 4 cut(s) | 402, 412, 437, 491 |
| CviJI | RGCY | 2 cut(s) | 145, 510 |
| CviKI_1 | RGCY | 2 cut(s) | 145, 510 |
| CviQI | GTAC | 2 cut(s) | 409, 467 |
| DdeI | CTNAG | 2 cut(s) | 249, 265 |
| DpnI | GATC | 1 cut(s) | 254 |
| DpnII | GATC | 1 cut(s) | 252 |
| Eco130I | CCWWGG | 1 cut(s) | 532 |
| Eco31I | GGTCTC | 1 cut(s) | 252 |
| EcoRII | CCWGG | 1 cut(s) | 145 |
| EcoT14I | CCWWGG | 1 cut(s) | 532 |
| ErhI | CCWWGG | 1 cut(s) | 532 |
| Esp3I | CGTCTC | 1 cut(s) | 232 |
| FaeI | CATG | 4 cut(s) | 405, 415, 440, 494 |
| FaiI | YATR | 6 cut(s) | 133, 219, 403, 413, 438, 492 |
| FatI | CATG | 4 cut(s) | 401, 411, 436, 490 |
| Fnu4HI | GCNGC | 2 cut(s) | 16, 176 |
| FokI | GGATG | 1 cut(s) | 200 |
| Fsp4HI | GCNGC | 2 cut(s) | 16, 176 |
| GluI | GCNGC | 2 cut(s) | 16, 176 |
| GsuI | CTGGAG | 2 cut(s) | 301, 369 |
| HaeIII | GGCC | 1 cut(s) | 145 |
| HapII | CCGG | 2 cut(s) | 12, 504 |
| Hin1I | GRCGYC | 1 cut(s) | 365 |
| Hin1II | CATG | 4 cut(s) | 405, 415, 440, 494 |
| HincII | GTYRAC | 1 cut(s) | 446 |
| HindII | GTYRAC | 1 cut(s) | 446 |
| HinfI | GANTC | 1 cut(s) | 201 |
| HpaII | CCGG | 2 cut(s) | 12, 504 |
| HphI | GGTGA | 1 cut(s) | 430 |
| Hpy166II | GTNNAC | 1 cut(s) | 446 |
| Hpy188I | TCNGA | 5 cut(s) | 30, 252, 266, 370, 477 |
| Hpy188III | TCNNGA | 2 cut(s) | 231, 348 |
| Hpy8I | GTNNAC | 1 cut(s) | 446 |
| Hpy99I | CGWCG | 2 cut(s) | 87, 367 |
| HpyAV | CCTTC | 1 cut(s) | 237 |
| HpyCH4III | ACNGT | 4 cut(s) | 125, 301, 466, 540 |
| HpyCH4IV | ACGT | 3 cut(s) | 82, 365, 480 |
| HpyCH4V | TGCA | 3 cut(s) | 183, 436, 515 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 21, 516 |
| HpyF3I | CTNAG | 2 cut(s) | 249, 265 |
| HpySE526I | ACGT | 3 cut(s) | 82, 365, 480 |
| Hsp92I | GRCGYC | 1 cut(s) | 365 |
| Hsp92II | CATG | 4 cut(s) | 405, 415, 440, 494 |
| Kzo9I | GATC | 1 cut(s) | 252 |
| LmnI | GCTCC | 3 cut(s) | 350, 503, 507 |
| Lsp1109I | GCAGC | 2 cut(s) | 27, 162 |
| LweI | GCATC | 3 cut(s) | 162, 170, 368 |
| MaeII | ACGT | 3 cut(s) | 82, 365, 480 |
| MaeIII | GTNAC | 2 cut(s) | 119, 481 |
| MalI | GATC | 1 cut(s) | 254 |
| MboI | GATC | 1 cut(s) | 252 |
| MboII | GAAGA | 2 cut(s) | 204, 219 |
| MflI | RGATCY | 1 cut(s) | 252 |
| MhlI | GDGCHC | 1 cut(s) | 464 |
| MluCI | AATT | 4 cut(s) | 62, 137, 150, 196 |
| MnlI | CCTC | 4 cut(s) | 399, 408, 434, 511 |
| MslI | CAYNNNNRTG | 3 cut(s) | 53, 400, 416 |
| MspI | CCGG | 2 cut(s) | 12, 504 |
| MspR9I | CCNGG | 2 cut(s) | 147, 505 |
| MvaI | CCWGG | 1 cut(s) | 147 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 21, 516 |
| NciI | CCSGG | 1 cut(s) | 505 |
| NdeII | GATC | 1 cut(s) | 252 |
| NlaIII | CATG | 4 cut(s) | 405, 415, 440, 494 |
| NlaIV | GGNNCC | 1 cut(s) | 463 |
| NmuCI | GTSAC | 1 cut(s) | 481 |
| OliI | CACNNNNGTG | 1 cut(s) | 53 |
| PfeI | GAWTC | 1 cut(s) | 201 |
| PflFI | GACNNNGTC | 1 cut(s) | 492 |
| PfoI | TCCNGGA | 1 cut(s) | 503 |
| PkrI | GCNGC | 2 cut(s) | 17, 177 |
| PshAI | GACNNNNGTC | 1 cut(s) | 244 |
| Psp6I | CCWGG | 1 cut(s) | 145 |
| PspGI | CCWGG | 1 cut(s) | 145 |
| PspN4I | GGNNCC | 1 cut(s) | 463 |
| PstNI | CAGNNNCTG | 1 cut(s) | 256 |
| PsuI | RGATCY | 1 cut(s) | 252 |
| PsyI | GACNNNGTC | 1 cut(s) | 492 |
| RsaI | GTAC | 2 cut(s) | 410, 468 |
| RsaNI | GTAC | 2 cut(s) | 409, 467 |
| RseI | CAYNNNNRTG | 3 cut(s) | 53, 400, 416 |
| SatI | GCNGC | 2 cut(s) | 16, 176 |
| Sau3AI | GATC | 1 cut(s) | 252 |
| ScrFI | CCNGG | 2 cut(s) | 147, 505 |
| SduI | GDGCHC | 1 cut(s) | 464 |
| SetI | ASST | 9 cut(s) | 85, 189, 248, 368, 410, 445, 483, 512, 534 |
| SfaNI | GCATC | 3 cut(s) | 162, 170, 368 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 53, 400, 416 |
| SmlI | CTYRAG | 1 cut(s) | 231 |
| SmoI | CTYRAG | 1 cut(s) | 231 |
| Sse9I | AATT | 4 cut(s) | 62, 137, 150, 196 |
| StyD4I | CCNGG | 2 cut(s) | 145, 503 |
| StyI | CCWWGG | 1 cut(s) | 532 |
| TaaI | ACNGT | 4 cut(s) | 125, 301, 466, 540 |
| TaiI | ACGT | 3 cut(s) | 85, 368, 483 |
| TaqI | TCGA | 2 cut(s) | 362, 379 |
| TasI | AATT | 4 cut(s) | 62, 137, 150, 196 |
| TfiI | GAWTC | 1 cut(s) | 201 |
| TscAI | CASTG | 1 cut(s) | 490 |
| TseFI | GTSAC | 1 cut(s) | 481 |
| TseI | GCWGC | 2 cut(s) | 15, 175 |
| Tsp45I | GTSAC | 1 cut(s) | 481 |
| TspDTI | ATGAA | 3 cut(s) | 101, 193, 213 |
| TspRI | CASTG | 1 cut(s) | 490 |
| Tth111I | GACNNNGTC | 1 cut(s) | 492 |
| XapI | RAATTY | 1 cut(s) | 137 |
| ZraI | GACGTC | 1 cut(s) | 366 |