ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 398 |
| AccB1I | GGYRCC | 1 cut(s) | 135 |
| AccI | GTMKAC | 3 cut(s) | 171, 513, 547 |
| AciI | CCGC | 3 cut(s) | 403, 426, 452 |
| AcyI | GRCGYC | 1 cut(s) | 136 |
| AfaI | GTAC | 1 cut(s) | 291 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 166, 384, 432, 482 |
| AgsI | TTSAA | 1 cut(s) | 85 |
| AjiI | CACGTC | 2 cut(s) | 97, 265 |
| AjnI | CCWGG | 4 cut(s) | 227, 360, 377, 431 |
| AluBI | AGCT | 1 cut(s) | 570 |
| AluI | AGCT | 1 cut(s) | 570 |
| ApeKI | GCWGC | 4 cut(s) | 310, 399, 519, 522 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 540, 572 |
| AspLEI | GCGC | 2 cut(s) | 138, 399 |
| AsuC2I | CCSGG | 1 cut(s) | 161 |
| AsuHPI | GGTGA | 2 cut(s) | 254, 497 |
| AsuII | TTCGAA | 1 cut(s) | 564 |
| BanI | GGYRCC | 1 cut(s) | 135 |
| BbvI | GCAGC | 4 cut(s) | 322, 411, 506, 534 |
| BccI | CCATC | 2 cut(s) | 44, 183 |
| BciT130I | CCWGG | 4 cut(s) | 229, 362, 379, 433 |
| BcnI | CCSGG | 1 cut(s) | 161 |
| BfaI | CTAG | 1 cut(s) | 456 |
| BfmI | CTRYAG | 2 cut(s) | 417, 520 |
| BfoI | RGCGCY | 1 cut(s) | 139 |
| BisI | GCNGC | 6 cut(s) | 311, 400, 403, 453, 520, 523 |
| BlsI | GCNGC | 6 cut(s) | 312, 401, 404, 454, 521, 524 |
| Bme1390I | CCNGG | 5 cut(s) | 161, 229, 362, 379, 433 |
| BmgBI | CACGTC | 2 cut(s) | 97, 265 |
| BmiI | GGNNCC | 1 cut(s) | 137 |
| BmrFI | CCNGG | 5 cut(s) | 161, 229, 362, 379, 433 |
| BmsI | GCATC | 1 cut(s) | 384 |
| BpmI | CTGGAG | 2 cut(s) | 182, 400 |
| Bpu14I | TTCGAA | 1 cut(s) | 564 |
| BpuMI | CCSGG | 1 cut(s) | 161 |
| BsaHI | GRCGYC | 1 cut(s) | 136 |
| BsaJI | CCNNGG | 3 cut(s) | 227, 228, 361 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 166, 384, 432, 482 |
| Bse1I | ACTGG | 1 cut(s) | 199 |
| Bse3DI | GCAATG | 1 cut(s) | 178 |
| BseBI | CCWGG | 4 cut(s) | 229, 362, 379, 433 |
| BseDI | CCNNGG | 3 cut(s) | 227, 228, 361 |
| BseGI | GGATG | 2 cut(s) | 399, 604 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 166, 384, 432, 482 |
| BseMI | GCAATG | 1 cut(s) | 178 |
| BseNI | ACTGG | 1 cut(s) | 199 |
| BseXI | GCAGC | 4 cut(s) | 322, 411, 506, 534 |
| BsgI | GTGCAG | 2 cut(s) | 231, 306 |
| BshNI | GGYRCC | 1 cut(s) | 135 |
| BsiSI | CCGG | 1 cut(s) | 161 |
| BslFI | GGGAC | 1 cut(s) | 457 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 166, 384, 432, 482 |
| BsmFI | GGGAC | 1 cut(s) | 457 |
| BsmI | GAATGC | 1 cut(s) | 221 |
| Bsp119I | TTCGAA | 1 cut(s) | 564 |
| Bsp143I | GATC | 1 cut(s) | 349 |
| BspACI | CCGC | 3 cut(s) | 403, 426, 452 |
| BspLI | GGNNCC | 1 cut(s) | 137 |
| BspMAI | CTGCAG | 1 cut(s) | 524 |
| BspT104I | TTCGAA | 1 cut(s) | 564 |
| BspT107I | GGYRCC | 1 cut(s) | 135 |
| BsrDI | GCAATG | 1 cut(s) | 178 |
| BsrI | ACTGG | 1 cut(s) | 199 |
| BssECI | CCNNGG | 3 cut(s) | 227, 228, 361 |
| BssMI | GATC | 1 cut(s) | 349 |
| BssNI | GRCGYC | 1 cut(s) | 136 |
| Bst2UI | CCWGG | 4 cut(s) | 229, 362, 379, 433 |
| Bst4CI | ACNGT | 4 cut(s) | 169, 258, 418, 532 |
| Bst6I | CTCTTC | 1 cut(s) | 228 |
| BstACI | GRCGYC | 1 cut(s) | 136 |
| BstBI | TTCGAA | 1 cut(s) | 564 |
| BstDEI | CTNAG | 1 cut(s) | 206 |
| BstF5I | GGATG | 2 cut(s) | 399, 604 |
| BstH2I | RGCGCY | 1 cut(s) | 139 |
| BstHHI | GCGC | 2 cut(s) | 138, 399 |
| BstKTI | GATC | 1 cut(s) | 352 |
| BstMBI | GATC | 1 cut(s) | 349 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 202, 461 |
| BstNI | CCWGG | 4 cut(s) | 229, 362, 379, 433 |
| BstSCI | CCNGG | 5 cut(s) | 159, 227, 360, 377, 431 |
| BstSFI | CTRYAG | 2 cut(s) | 417, 520 |
| BstV1I | GCAGC | 4 cut(s) | 322, 411, 506, 534 |
| BtgZI | GCGATG | 1 cut(s) | 564 |
| BtrI | CACGTC | 2 cut(s) | 97, 265 |
| BtsCI | GGATG | 2 cut(s) | 399, 604 |
| BtsI | GCAGTG | 1 cut(s) | 447 |
| BtsIMutI | CAGTG | 1 cut(s) | 447 |
| CfoI | GCGC | 2 cut(s) | 138, 399 |
| Csp6I | GTAC | 1 cut(s) | 290 |
| CviAII | CATG | 2 cut(s) | 482, 584 |
| CviJI | RGCY | 6 cut(s) | 313, 357, 402, 422, 455, 570 |
| CviKI_1 | RGCY | 6 cut(s) | 313, 357, 402, 422, 455, 570 |
| CviQI | GTAC | 1 cut(s) | 290 |
| DdeI | CTNAG | 1 cut(s) | 206 |
| DinI | GGCGCC | 1 cut(s) | 137 |
| DpnI | GATC | 1 cut(s) | 351 |
| DpnII | GATC | 1 cut(s) | 349 |
| Eam1104I | CTCTTC | 1 cut(s) | 228 |
| EarI | CTCTTC | 1 cut(s) | 228 |
| Eco32I | GATATC | 1 cut(s) | 61 |
| EcoRII | CCWGG | 4 cut(s) | 227, 360, 377, 431 |
| EcoRV | GATATC | 1 cut(s) | 61 |
| EgeI | GGCGCC | 1 cut(s) | 137 |
| EheI | GGCGCC | 1 cut(s) | 137 |
| FaeI | CATG | 2 cut(s) | 485, 587 |
| FaiI | YATR | 9 cut(s) | 7, 38, 90, 153, 248, 270, 483, 492, 585 |
| FaqI | GGGAC | 1 cut(s) | 457 |
| FatI | CATG | 2 cut(s) | 481, 583 |
| FblI | GTMKAC | 3 cut(s) | 171, 513, 547 |
| Fnu4HI | GCNGC | 6 cut(s) | 311, 400, 403, 453, 520, 523 |
| FokI | GGATG | 1 cut(s) | 406 |
| Fsp4HI | GCNGC | 6 cut(s) | 311, 400, 403, 453, 520, 523 |
| FspBI | CTAG | 1 cut(s) | 456 |
| FspI | TGCGCA | 1 cut(s) | 398 |
| GlaI | GCGC | 2 cut(s) | 137, 398 |
| GluI | GCNGC | 6 cut(s) | 311, 400, 403, 453, 520, 523 |
| GsuI | CTGGAG | 2 cut(s) | 182, 400 |
| HaeII | RGCGCY | 1 cut(s) | 139 |
| HapII | CCGG | 1 cut(s) | 161 |
| HhaI | GCGC | 2 cut(s) | 138, 399 |
| Hin1I | GRCGYC | 1 cut(s) | 136 |
| Hin1II | CATG | 2 cut(s) | 485, 587 |
| Hin6I | GCGC | 2 cut(s) | 136, 397 |
| HinP1I | GCGC | 2 cut(s) | 136, 397 |
| HincII | GTYRAC | 1 cut(s) | 548 |
| HindII | GTYRAC | 1 cut(s) | 548 |
| HindIII | AAGCTT | 1 cut(s) | 568 |
| HinfI | GANTC | 2 cut(s) | 110, 510 |
| HpaII | CCGG | 1 cut(s) | 161 |
| HphI | GGTGA | 2 cut(s) | 254, 497 |
| Hpy166II | GTNNAC | 5 cut(s) | 172, 447, 488, 514, 548 |
| Hpy188I | TCNGA | 1 cut(s) | 49 |
| Hpy188III | TCNNGA | 2 cut(s) | 536, 596 |
| Hpy8I | GTNNAC | 5 cut(s) | 172, 447, 488, 514, 548 |
| Hpy99I | CGWCG | 3 cut(s) | 169, 546, 549 |
| HpyAV | CCTTC | 1 cut(s) | 268 |
| HpyCH4III | ACNGT | 4 cut(s) | 169, 258, 418, 532 |
| HpyCH4IV | ACGT | 3 cut(s) | 96, 264, 541 |
| HpyCH4V | TGCA | 6 cut(s) | 183, 212, 262, 287, 310, 522 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 202, 461 |
| HpyF3I | CTNAG | 1 cut(s) | 206 |
| HpySE526I | ACGT | 3 cut(s) | 96, 264, 541 |
| Hsp92I | GRCGYC | 1 cut(s) | 136 |
| Hsp92II | CATG | 2 cut(s) | 485, 587 |
| HspAI | GCGC | 2 cut(s) | 136, 397 |
| KasI | GGCGCC | 1 cut(s) | 135 |
| Kzo9I | GATC | 1 cut(s) | 349 |
| LmnI | GCTCC | 1 cut(s) | 201 |
| Lsp1109I | GCAGC | 4 cut(s) | 322, 411, 506, 534 |
| LweI | GCATC | 1 cut(s) | 384 |
| MaeI | CTAG | 1 cut(s) | 456 |
| MaeII | ACGT | 3 cut(s) | 96, 264, 541 |
| MalI | GATC | 1 cut(s) | 351 |
| MboI | GATC | 1 cut(s) | 349 |
| MboII | GAAGA | 1 cut(s) | 215 |
| Mly113I | GGCGCC | 1 cut(s) | 136 |
| MlyI | GAGTC | 1 cut(s) | 519 |
| MnlI | CCTC | 1 cut(s) | 377 |
| MslI | CAYNNNNRTG | 1 cut(s) | 267 |
| MspI | CCGG | 1 cut(s) | 161 |
| MspR9I | CCNGG | 5 cut(s) | 161, 229, 362, 379, 433 |
| Mva1269I | GAATGC | 1 cut(s) | 221 |
| MvaI | CCWGG | 4 cut(s) | 229, 362, 379, 433 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 202, 461 |
| NarI | GGCGCC | 1 cut(s) | 136 |
| NciI | CCSGG | 1 cut(s) | 161 |
| NdeII | GATC | 1 cut(s) | 349 |
| NlaIII | CATG | 2 cut(s) | 485, 587 |
| NlaIV | GGNNCC | 1 cut(s) | 137 |
| NsbI | TGCGCA | 1 cut(s) | 398 |
| NspV | TTCGAA | 1 cut(s) | 564 |
| PasI | CCCWGGG | 1 cut(s) | 228 |
| PctI | GAATGC | 1 cut(s) | 221 |
| PfeI | GAWTC | 1 cut(s) | 110 |
| PkrI | GCNGC | 6 cut(s) | 312, 401, 404, 454, 521, 524 |
| PleI | GAGTC | 1 cut(s) | 518 |
| PluTI | GGCGCC | 1 cut(s) | 139 |
| PpsI | GAGTC | 1 cut(s) | 518 |
| Psp6I | CCWGG | 4 cut(s) | 227, 360, 377, 431 |
| PspGI | CCWGG | 4 cut(s) | 227, 360, 377, 431 |
| PspN4I | GGNNCC | 1 cut(s) | 137 |
| PstI | CTGCAG | 1 cut(s) | 524 |
| RsaI | GTAC | 1 cut(s) | 291 |
| RsaNI | GTAC | 1 cut(s) | 290 |
| RseI | CAYNNNNRTG | 1 cut(s) | 267 |
| SalI | GTCGAC | 1 cut(s) | 546 |
| SatI | GCNGC | 6 cut(s) | 311, 400, 403, 453, 520, 523 |
| Sau3AI | GATC | 1 cut(s) | 349 |
| SchI | GAGTC | 1 cut(s) | 519 |
| ScrFI | CCNGG | 5 cut(s) | 161, 229, 362, 379, 433 |
| SetI | ASST | 9 cut(s) | 99, 148, 267, 345, 380, 434, 544, 557, 572 |
| SfaNI | GCATC | 1 cut(s) | 384 |
| SfcI | CTRYAG | 2 cut(s) | 417, 520 |
| SfoI | GGCGCC | 1 cut(s) | 137 |
| SfuI | TTCGAA | 1 cut(s) | 564 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 267 |
| SsiI | CCGC | 3 cut(s) | 403, 426, 452 |
| SspDI | GGCGCC | 1 cut(s) | 135 |
| SspMI | CTAG | 1 cut(s) | 456 |
| StyD4I | CCNGG | 5 cut(s) | 159, 227, 360, 377, 431 |
| TaaI | ACNGT | 4 cut(s) | 169, 258, 418, 532 |
| TaiI | ACGT | 3 cut(s) | 99, 267, 544 |
| TaqI | TCGA | 2 cut(s) | 547, 564 |
| TaqII | GACCGA | 1 cut(s) | 5 |
| TauI | GCSGC | 2 cut(s) | 405, 455 |
| TfiI | GAWTC | 1 cut(s) | 110 |
| TscAI | CASTG | 1 cut(s) | 454 |
| TseI | GCWGC | 4 cut(s) | 310, 399, 519, 522 |
| TspDTI | ATGAA | 4 cut(s) | 263, 267, 470, 603 |
| TspRI | CASTG | 1 cut(s) | 454 |
| XmiI | GTMKAC | 3 cut(s) | 171, 513, 547 |
| XspI | CTAG | 1 cut(s) | 456 |