ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 689 |
| Acc65I | GGTACC | 1 cut(s) | 820 |
| AccB1I | GGYRCC | 1 cut(s) | 820 |
| AccI | GTMKAC | 1 cut(s) | 230 |
| AccII | CGCG | 1 cut(s) | 297 |
| AccIII | TCCGGA | 2 cut(s) | 31, 389 |
| AciI | CCGC | 9 cut(s) | 108, 280, 286, 295, 304, 351, 548, 696, 758 |
| AclWI | GGATC | 2 cut(s) | 151, 598 |
| AcsI | RAATTY | 1 cut(s) | 722 |
| AcyI | GRCGYC | 2 cut(s) | 5, 426 |
| AfaI | GTAC | 2 cut(s) | 128, 822 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 17, 225, 506, 757 |
| AjnI | CCWGG | 1 cut(s) | 288 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 206, 238 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 4 cut(s) | 68, 582, 793, 862 |
| AluI | AGCT | 4 cut(s) | 68, 582, 793, 862 |
| Alw21I | GWGCWC | 4 cut(s) | 303, 330, 401, 835 |
| Alw26I | GTCTC | 3 cut(s) | 85, 545, 734 |
| Alw44I | GTGCAC | 1 cut(s) | 831 |
| AlwI | GGATC | 2 cut(s) | 151, 598 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 671 |
| Aor13HI | TCCGGA | 2 cut(s) | 31, 389 |
| AoxI | GGCC | 4 cut(s) | 84, 207, 316, 603 |
| ApaLI | GTGCAC | 1 cut(s) | 831 |
| ApeKI | GCWGC | 4 cut(s) | 253, 282, 784, 840 |
| ApoI | RAATTY | 1 cut(s) | 722 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 27 |
| Asp718I | GGTACC | 1 cut(s) | 820 |
| AspS9I | GGNCC | 2 cut(s) | 292, 497 |
| AsuC2I | CCSGG | 4 cut(s) | 18, 131, 151, 495 |
| AsuHPI | GGTGA | 2 cut(s) | 6, 464 |
| AvaII | GGWCC | 2 cut(s) | 292, 497 |
| BaeGI | GKGCMC | 1 cut(s) | 835 |
| BanI | GGYRCC | 1 cut(s) | 820 |
| Bbv12I | GWGCWC | 4 cut(s) | 303, 330, 401, 835 |
| BbvI | GCAGC | 4 cut(s) | 240, 269, 771, 852 |
| BceAI | ACGGC | 1 cut(s) | 184 |
| BciT130I | CCWGG | 1 cut(s) | 290 |
| BcnI | CCSGG | 4 cut(s) | 18, 131, 151, 495 |
| BcoDI | GTCTC | 3 cut(s) | 85, 545, 734 |
| BfmI | CTRYAG | 1 cut(s) | 594 |
| BfuAI | ACCTGC | 1 cut(s) | 689 |
| BisI | GCNGC | 7 cut(s) | 254, 283, 286, 352, 759, 785, 841 |
| BlsI | GCNGC | 7 cut(s) | 255, 284, 287, 353, 760, 786, 842 |
| Bme1390I | CCNGG | 5 cut(s) | 18, 131, 151, 290, 495 |
| Bme18I | GGWCC | 2 cut(s) | 292, 497 |
| BmgT120I | GGNCC | 2 cut(s) | 292, 497 |
| BmiI | GGNNCC | 2 cut(s) | 498, 822 |
| BmrFI | CCNGG | 5 cut(s) | 18, 131, 151, 290, 495 |
| BmsI | GCATC | 1 cut(s) | 531 |
| Bpu10I | CCTNAGC | 1 cut(s) | 863 |
| BpuEI | CTTGAG | 1 cut(s) | 109 |
| BpuMI | CCSGG | 4 cut(s) | 18, 131, 151, 495 |
| Bsa29I | ATCGAT | 1 cut(s) | 570 |
| BsaHI | GRCGYC | 2 cut(s) | 5, 426 |
| BsaI | GGTCTC | 3 cut(s) | 85, 545, 734 |
| BsaJI | CCNNGG | 2 cut(s) | 17, 313 |
| BsaWI | WCCGGW | 4 cut(s) | 31, 225, 389, 499 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 17, 225, 506, 757 |
| Bse118I | RCCGGY | 1 cut(s) | 544 |
| Bse1I | ACTGG | 1 cut(s) | 462 |
| BseAI | TCCGGA | 2 cut(s) | 31, 389 |
| BseBI | CCWGG | 1 cut(s) | 290 |
| BseCI | ATCGAT | 1 cut(s) | 570 |
| BseDI | CCNNGG | 2 cut(s) | 17, 313 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 17, 225, 506, 757 |
| BseMII | CTCAG | 3 cut(s) | 521, 569, 663 |
| BseNI | ACTGG | 1 cut(s) | 462 |
| BseSI | GKGCMC | 1 cut(s) | 835 |
| BseXI | GCAGC | 4 cut(s) | 240, 269, 771, 852 |
| BsgI | GTGCAG | 1 cut(s) | 770 |
| Bsh1236I | CGCG | 1 cut(s) | 297 |
| BshFI | GGCC | 4 cut(s) | 86, 209, 318, 605 |
| BshNI | GGYRCC | 1 cut(s) | 820 |
| BshVI | ATCGAT | 1 cut(s) | 570 |
| BsiHKAI | GWGCWC | 4 cut(s) | 303, 330, 401, 835 |
| BsiSI | CCGG | 9 cut(s) | 17, 32, 131, 150, 226, 390, 494, 500, 545 |
| BslFI | GGGAC | 1 cut(s) | 446 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 17, 225, 506, 757 |
| BsmAI | GTCTC | 3 cut(s) | 85, 545, 734 |
| BsmFI | GGGAC | 1 cut(s) | 446 |
| BsmI | GAATGC | 3 cut(s) | 691, 746, 760 |
| BsnI | GGCC | 4 cut(s) | 86, 209, 318, 605 |
| Bso31I | GGTCTC | 3 cut(s) | 85, 545, 734 |
| Bsp1286I | GDGCHC | 4 cut(s) | 303, 330, 401, 835 |
| Bsp13I | TCCGGA | 2 cut(s) | 31, 389 |
| Bsp143I | GATC | 4 cut(s) | 156, 417, 590, 733 |
| BspACI | CCGC | 9 cut(s) | 108, 280, 286, 295, 304, 351, 548, 696, 758 |
| BspANI | GGCC | 4 cut(s) | 86, 209, 318, 605 |
| BspCNI | CTCAG | 3 cut(s) | 522, 570, 664 |
| BspDI | ATCGAT | 1 cut(s) | 570 |
| BspEI | TCCGGA | 2 cut(s) | 31, 389 |
| BspFNI | CGCG | 1 cut(s) | 297 |
| BspLI | GGNNCC | 2 cut(s) | 498, 822 |
| BspMAI | CTGCAG | 1 cut(s) | 598 |
| BspMI | ACCTGC | 1 cut(s) | 689 |
| BspPI | GGATC | 2 cut(s) | 151, 598 |
| BspT107I | GGYRCC | 1 cut(s) | 820 |
| BspTNI | GGTCTC | 3 cut(s) | 85, 545, 734 |
| BsrFI | RCCGGY | 1 cut(s) | 544 |
| BsrI | ACTGG | 1 cut(s) | 462 |
| BssAI | RCCGGY | 1 cut(s) | 544 |
| BssECI | CCNNGG | 2 cut(s) | 17, 313 |
| BssMI | GATC | 4 cut(s) | 156, 417, 590, 733 |
| BssNI | GRCGYC | 2 cut(s) | 5, 426 |
| Bst2UI | CCWGG | 1 cut(s) | 290 |
| Bst4CI | ACNGT | 8 cut(s) | 75, 197, 235, 346, 437, 449, 610, 811 |
| Bst6I | CTCTTC | 1 cut(s) | 18 |
| BstACI | GRCGYC | 2 cut(s) | 5, 426 |
| BstC8I | GCNNGC | 2 cut(s) | 299, 546 |
| BstDEI | CTNAG | 5 cut(s) | 530, 578, 672, 858, 863 |
| BstFNI | CGCG | 1 cut(s) | 297 |
| BstKTI | GATC | 4 cut(s) | 159, 420, 593, 736 |
| BstMAI | GTCTC | 3 cut(s) | 85, 545, 734 |
| BstMBI | GATC | 4 cut(s) | 156, 417, 590, 733 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 177, 215, 294, 303, 602, 790 |
| BstNI | CCWGG | 1 cut(s) | 290 |
| BstNSI | RCATGY | 1 cut(s) | 515 |
| BstSCI | CCNGG | 5 cut(s) | 16, 129, 149, 288, 493 |
| BstSFI | CTRYAG | 1 cut(s) | 594 |
| BstSLI | GKGCMC | 1 cut(s) | 835 |
| BstUI | CGCG | 1 cut(s) | 297 |
| BstV1I | GCAGC | 4 cut(s) | 240, 269, 771, 852 |
| BstX2I | RGATCY | 2 cut(s) | 156, 590 |
| BstYI | RGATCY | 2 cut(s) | 156, 590 |
| Bsu15I | ATCGAT | 1 cut(s) | 570 |
| BsuRI | GGCC | 4 cut(s) | 86, 209, 318, 605 |
| BsuTUI | ATCGAT | 1 cut(s) | 570 |
| BtsIMutI | CAGTG | 2 cut(s) | 476, 807 |
| BveI | ACCTGC | 1 cut(s) | 689 |
| Cac8I | GCNNGC | 2 cut(s) | 299, 546 |
| CaiI | CAGNNNCTG | 1 cut(s) | 671 |
| Cfr10I | RCCGGY | 1 cut(s) | 544 |
| Cfr13I | GGNCC | 2 cut(s) | 292, 497 |
| ClaI | ATCGAT | 1 cut(s) | 570 |
| CseI | GACGC | 1 cut(s) | 415 |
| Csp6I | GTAC | 2 cut(s) | 127, 821 |
| CviAII | CATG | 3 cut(s) | 512, 628, 847 |
| CviQI | GTAC | 2 cut(s) | 127, 821 |
| DdeI | CTNAG | 5 cut(s) | 530, 578, 672, 858, 863 |
| DpnI | GATC | 4 cut(s) | 158, 419, 592, 735 |
| DpnII | GATC | 4 cut(s) | 156, 417, 590, 733 |
| Eam1104I | CTCTTC | 1 cut(s) | 18 |
| EarI | CTCTTC | 1 cut(s) | 18 |
| EciI | GGCGGA | 3 cut(s) | 97, 293, 563 |
| Eco147I | AGGCCT | 1 cut(s) | 86 |
| Eco31I | GGTCTC | 3 cut(s) | 85, 545, 734 |
| Eco47I | GGWCC | 2 cut(s) | 292, 497 |
| EcoRII | CCWGG | 1 cut(s) | 288 |
| FaeI | CATG | 3 cut(s) | 515, 631, 850 |
| FaqI | GGGAC | 1 cut(s) | 446 |
| FatI | CATG | 3 cut(s) | 511, 627, 846 |
| FblI | GTMKAC | 1 cut(s) | 230 |
| Fnu4HI | GCNGC | 7 cut(s) | 254, 283, 286, 352, 759, 785, 841 |
| Fsp4HI | GCNGC | 7 cut(s) | 254, 283, 286, 352, 759, 785, 841 |
| GluI | GCNGC | 7 cut(s) | 254, 283, 286, 352, 759, 785, 841 |
| HaeIII | GGCC | 4 cut(s) | 86, 209, 318, 605 |
| HapII | CCGG | 9 cut(s) | 17, 32, 131, 150, 226, 390, 494, 500, 545 |
| HgaI | GACGC | 1 cut(s) | 415 |
| Hin1I | GRCGYC | 2 cut(s) | 5, 426 |
| Hin1II | CATG | 3 cut(s) | 515, 631, 850 |
| HindIII | AAGCTT | 1 cut(s) | 860 |
| HinfI | GANTC | 3 cut(s) | 333, 359, 800 |
| HpaII | CCGG | 9 cut(s) | 17, 32, 131, 150, 226, 390, 494, 500, 545 |
| HphI | GGTGA | 2 cut(s) | 6, 464 |
| Hpy166II | GTNNAC | 5 cut(s) | 231, 238, 445, 455, 833 |
| Hpy188I | TCNGA | 4 cut(s) | 118, 364, 469, 579 |
| Hpy188III | TCNNGA | 5 cut(s) | 32, 79, 390, 731, 751 |
| Hpy8I | GTNNAC | 5 cut(s) | 231, 238, 445, 455, 833 |
| Hpy99I | CGWCG | 6 cut(s) | 10, 167, 170, 350, 371, 374 |
| HpyAV | CCTTC | 2 cut(s) | 76, 277 |
| HpyCH4III | ACNGT | 8 cut(s) | 75, 197, 235, 346, 437, 449, 610, 811 |
| HpyCH4IV | ACGT | 1 cut(s) | 372 |
| HpyCH4V | TGCA | 7 cut(s) | 476, 562, 596, 691, 746, 787, 833 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 177, 215, 294, 303, 602, 790 |
| HpyF3I | CTNAG | 5 cut(s) | 530, 578, 672, 858, 863 |
| HpySE526I | ACGT | 1 cut(s) | 372 |
| Hsp92I | GRCGYC | 2 cut(s) | 5, 426 |
| Hsp92II | CATG | 3 cut(s) | 515, 631, 850 |
| Kpn2I | TCCGGA | 2 cut(s) | 31, 389 |
| KpnI | GGTACC | 1 cut(s) | 824 |
| KroI | GCCGGC | 1 cut(s) | 544 |
| KroNI | GCCGGC | 1 cut(s) | 546 |
| Kzo9I | GATC | 4 cut(s) | 156, 417, 590, 733 |
| LmnI | GCTCC | 2 cut(s) | 306, 325 |
| Lsp1109I | GCAGC | 4 cut(s) | 240, 269, 771, 852 |
| LweI | GCATC | 1 cut(s) | 531 |
| MaeII | ACGT | 1 cut(s) | 372 |
| MaeIII | GTNAC | 2 cut(s) | 12, 610 |
| MalI | GATC | 4 cut(s) | 158, 419, 592, 735 |
| MboI | GATC | 4 cut(s) | 156, 417, 590, 733 |
| MboII | GAAGA | 3 cut(s) | 35, 146, 166 |
| MflI | RGATCY | 2 cut(s) | 156, 590 |
| MhlI | GDGCHC | 4 cut(s) | 303, 330, 401, 835 |
| MluCI | AATT | 3 cut(s) | 275, 471, 722 |
| MmeI | TCCRAC | 3 cut(s) | 141, 699, 795 |
| MroI | TCCGGA | 2 cut(s) | 31, 389 |
| MroNI | GCCGGC | 1 cut(s) | 544 |
| MroXI | GAANNNNTTC | 1 cut(s) | 27 |
| MseI | TTAA | 1 cut(s) | 600 |
| MslI | CAYNNNNRTG | 1 cut(s) | 539 |
| MspA1I | CMGCKG | 1 cut(s) | 282 |
| MspI | CCGG | 9 cut(s) | 17, 32, 131, 150, 226, 390, 494, 500, 545 |
| MspR9I | CCNGG | 5 cut(s) | 18, 131, 151, 290, 495 |
| Mva1269I | GAATGC | 3 cut(s) | 691, 746, 760 |
| MvaI | CCWGG | 1 cut(s) | 290 |
| MvnI | CGCG | 1 cut(s) | 297 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 177, 215, 294, 303, 602, 790 |
| NaeI | GCCGGC | 1 cut(s) | 546 |
| NciI | CCSGG | 4 cut(s) | 18, 131, 151, 495 |
| NdeII | GATC | 4 cut(s) | 156, 417, 590, 733 |
| NgoMIV | GCCGGC | 1 cut(s) | 544 |
| NlaIII | CATG | 3 cut(s) | 515, 631, 850 |
| NlaIV | GGNNCC | 2 cut(s) | 498, 822 |
| NmeAIII | GCCGAG | 2 cut(s) | 294, 816 |
| NmuCI | GTSAC | 2 cut(s) | 12, 610 |
| NspI | RCATGY | 1 cut(s) | 515 |
| PceI | AGGCCT | 1 cut(s) | 86 |
| PctI | GAATGC | 3 cut(s) | 691, 746, 760 |
| PdiI | GCCGGC | 1 cut(s) | 546 |
| PdmI | GAANNNNTTC | 1 cut(s) | 27 |
| PfeI | GAWTC | 3 cut(s) | 333, 359, 800 |
| PkrI | GCNGC | 7 cut(s) | 255, 284, 287, 353, 760, 786, 842 |
| Psp6I | CCWGG | 1 cut(s) | 288 |
| PspGI | CCWGG | 1 cut(s) | 288 |
| PspN4I | GGNNCC | 2 cut(s) | 498, 822 |
| PspPI | GGNCC | 2 cut(s) | 292, 497 |
| PstI | CTGCAG | 1 cut(s) | 598 |
| PstNI | CAGNNNCTG | 1 cut(s) | 671 |
| PsuI | RGATCY | 2 cut(s) | 156, 590 |
| RsaI | GTAC | 2 cut(s) | 128, 822 |
| RsaNI | GTAC | 2 cut(s) | 127, 821 |
| RseI | CAYNNNNRTG | 1 cut(s) | 539 |
| SaqAI | TTAA | 1 cut(s) | 600 |
| SatI | GCNGC | 7 cut(s) | 254, 283, 286, 352, 759, 785, 841 |
| Sau3AI | GATC | 4 cut(s) | 156, 417, 590, 733 |
| Sau96I | GGNCC | 2 cut(s) | 292, 497 |
| ScrFI | CCNGG | 5 cut(s) | 18, 131, 151, 290, 495 |
| SduI | GDGCHC | 4 cut(s) | 303, 330, 401, 835 |
| SfaNI | GCATC | 1 cut(s) | 531 |
| SfcI | CTRYAG | 1 cut(s) | 594 |
| SinI | GGWCC | 2 cut(s) | 292, 497 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 539 |
| SmlI | CTYRAG | 1 cut(s) | 88 |
| SmoI | CTYRAG | 1 cut(s) | 88 |
| Sse9I | AATT | 3 cut(s) | 275, 471, 722 |
| SseBI | AGGCCT | 1 cut(s) | 86 |
| SsiI | CCGC | 9 cut(s) | 108, 280, 286, 295, 304, 351, 548, 696, 758 |
| StuI | AGGCCT | 1 cut(s) | 86 |
| StyD4I | CCNGG | 5 cut(s) | 16, 129, 149, 288, 493 |
| TaaI | ACNGT | 8 cut(s) | 75, 197, 235, 346, 437, 449, 610, 811 |
| TaiI | ACGT | 1 cut(s) | 375 |
| TaqI | TCGA | 6 cut(s) | 162, 263, 488, 518, 570, 732 |
| TasI | AATT | 3 cut(s) | 275, 471, 722 |
| TauI | GCSGC | 3 cut(s) | 288, 354, 761 |
| TfiI | GAWTC | 3 cut(s) | 333, 359, 800 |
| Tru1I | TTAA | 1 cut(s) | 600 |
| Tru9I | TTAA | 1 cut(s) | 600 |
| TscAI | CASTG | 2 cut(s) | 483, 814 |
| TseFI | GTSAC | 2 cut(s) | 12, 610 |
| TseI | GCWGC | 4 cut(s) | 253, 282, 784, 840 |
| Tsp45I | GTSAC | 2 cut(s) | 12, 610 |
| TspDTI | ATGAA | 2 cut(s) | 74, 497 |
| TspGWI | ACGGA | 1 cut(s) | 206 |
| TspRI | CASTG | 2 cut(s) | 483, 814 |
| VneI | GTGCAC | 1 cut(s) | 831 |
| VpaK11BI | GGWCC | 2 cut(s) | 292, 497 |
| XapI | RAATTY | 1 cut(s) | 722 |
| XceI | RCATGY | 1 cut(s) | 515 |
| XmiI | GTMKAC | 1 cut(s) | 230 |
| XmnI | GAANNNNTTC | 1 cut(s) | 27 |