ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 47, 607 |
| AatII | GACGTC | 1 cut(s) | 605 |
| Acc36I | ACCTGC | 1 cut(s) | 776 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 216 |
| AccI | GTMKAC | 1 cut(s) | 231 |
| AccII | CGCG | 2 cut(s) | 558, 754 |
| AciI | CCGC | 7 cut(s) | 82, 344, 373, 456, 558, 707, 715 |
| AcoI | YGGCCR | 1 cut(s) | 336 |
| AcuI | CTGAAG | 1 cut(s) | 475 |
| AcyI | GRCGYC | 1 cut(s) | 602 |
| AfaI | GTAC | 1 cut(s) | 509 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 124, 154, 216 |
| AgsI | TTSAA | 3 cut(s) | 74, 424, 740 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 502 |
| AjiI | CACGTC | 1 cut(s) | 271 |
| AjnI | CCWGG | 1 cut(s) | 359 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 219, 251 |
| Alw26I | GTCTC | 1 cut(s) | 489 |
| AoxI | GGCC | 1 cut(s) | 336 |
| ApeKI | GCWGC | 4 cut(s) | 44, 284, 370, 626 |
| AspA2I | CCTAGG | 1 cut(s) | 412 |
| AspLEI | GCGC | 2 cut(s) | 312, 558 |
| AspS9I | GGNCC | 1 cut(s) | 609 |
| AsuHPI | GGTGA | 1 cut(s) | 428 |
| AsuNHI | GCTAGC | 1 cut(s) | 563 |
| AvaII | GGWCC | 1 cut(s) | 609 |
| AvrII | CCTAGG | 1 cut(s) | 412 |
| BaeGI | GKGCMC | 1 cut(s) | 672 |
| BanII | GRGCYC | 1 cut(s) | 304 |
| BbvI | GCAGC | 4 cut(s) | 31, 271, 357, 638 |
| BccI | CCATC | 2 cut(s) | 218, 648 |
| BceAI | ACGGC | 3 cut(s) | 357, 529, 614 |
| BciT130I | CCWGG | 1 cut(s) | 361 |
| BclI | TGATCA | 1 cut(s) | 661 |
| BcoDI | GTCTC | 1 cut(s) | 489 |
| BfaI | CTAG | 2 cut(s) | 413, 564 |
| BfmI | CTRYAG | 1 cut(s) | 624 |
| BfoI | RGCGCY | 1 cut(s) | 313 |
| BfuAI | ACCTGC | 1 cut(s) | 776 |
| BisI | GCNGC | 5 cut(s) | 45, 285, 371, 374, 627 |
| BlnI | CCTAGG | 1 cut(s) | 412 |
| BlsI | GCNGC | 5 cut(s) | 46, 286, 372, 375, 628 |
| Bme1390I | CCNGG | 1 cut(s) | 361 |
| Bme18I | GGWCC | 1 cut(s) | 609 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 502 |
| BmgBI | CACGTC | 1 cut(s) | 271 |
| BmgT120I | GGNCC | 1 cut(s) | 609 |
| BmrFI | CCNGG | 1 cut(s) | 361 |
| BmrI | ACTGGG | 1 cut(s) | 133 |
| BmsI | GCATC | 4 cut(s) | 39, 340, 358, 471 |
| BmtI | GCTAGC | 1 cut(s) | 567 |
| BmuI | ACTGGG | 1 cut(s) | 133 |
| BpmI | CTGGAG | 1 cut(s) | 633 |
| BsaBI | GATNNNNATC | 1 cut(s) | 89 |
| BsaHI | GRCGYC | 1 cut(s) | 602 |
| BsaJI | CCNNGG | 3 cut(s) | 339, 401, 412 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 219, 249 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 124, 154, 216 |
| Bse1I | ACTGG | 2 cut(s) | 128, 650 |
| Bse8I | GATNNNNATC | 1 cut(s) | 89 |
| BseBI | CCWGG | 1 cut(s) | 361 |
| BseDI | CCNNGG | 3 cut(s) | 339, 401, 412 |
| BseGI | GGATG | 2 cut(s) | 331, 391 |
| BseJI | GATNNNNATC | 1 cut(s) | 89 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 124, 154, 216 |
| BseNI | ACTGG | 2 cut(s) | 128, 650 |
| BseSI | GKGCMC | 1 cut(s) | 672 |
| BseXI | GCAGC | 4 cut(s) | 31, 271, 357, 638 |
| BsgI | GTGCAG | 1 cut(s) | 240 |
| Bsh1236I | CGCG | 2 cut(s) | 558, 754 |
| BshFI | GGCC | 1 cut(s) | 338 |
| BsiSI | CCGG | 1 cut(s) | 335 |
| BslFI | GGGAC | 2 cut(s) | 140, 732 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 124, 154, 216 |
| BsmAI | GTCTC | 1 cut(s) | 489 |
| BsmBI | CGTCTC | 1 cut(s) | 489 |
| BsmFI | GGGAC | 2 cut(s) | 140, 732 |
| BsnI | GGCC | 1 cut(s) | 338 |
| Bsp1286I | GDGCHC | 2 cut(s) | 304, 672 |
| Bsp143I | GATC | 3 cut(s) | 90, 519, 661 |
| Bsp19I | CCATGG | 1 cut(s) | 401 |
| BspACI | CCGC | 7 cut(s) | 82, 344, 373, 456, 558, 707, 715 |
| BspANI | GGCC | 1 cut(s) | 338 |
| BspFNI | CGCG | 2 cut(s) | 558, 754 |
| BspMAI | CTGCAG | 1 cut(s) | 628 |
| BspMI | ACCTGC | 1 cut(s) | 776 |
| BspOI | GCTAGC | 1 cut(s) | 567 |
| BsrI | ACTGG | 2 cut(s) | 128, 650 |
| BssECI | CCNNGG | 3 cut(s) | 339, 401, 412 |
| BssMI | GATC | 3 cut(s) | 90, 519, 661 |
| BssNI | GRCGYC | 1 cut(s) | 602 |
| BssT1I | CCWWGG | 2 cut(s) | 401, 412 |
| Bst2UI | CCWGG | 1 cut(s) | 361 |
| Bst4CI | ACNGT | 2 cut(s) | 504, 659 |
| BstACI | GRCGYC | 1 cut(s) | 602 |
| BstC8I | GCNNGC | 3 cut(s) | 149, 207, 565 |
| BstDEI | CTNAG | 1 cut(s) | 380 |
| BstDSI | CCRYGG | 2 cut(s) | 339, 401 |
| BstF5I | GGATG | 2 cut(s) | 331, 391 |
| BstFNI | CGCG | 2 cut(s) | 558, 754 |
| BstH2I | RGCGCY | 1 cut(s) | 313 |
| BstHHI | GCGC | 2 cut(s) | 312, 558 |
| BstKTI | GATC | 3 cut(s) | 93, 522, 664 |
| BstMAI | GTCTC | 1 cut(s) | 489 |
| BstMBI | GATC | 3 cut(s) | 90, 519, 661 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 53, 211, 475, 564 |
| BstNI | CCWGG | 1 cut(s) | 361 |
| BstSCI | CCNGG | 1 cut(s) | 359 |
| BstSFI | CTRYAG | 1 cut(s) | 624 |
| BstSLI | GKGCMC | 1 cut(s) | 672 |
| BstUI | CGCG | 2 cut(s) | 558, 754 |
| BstV1I | GCAGC | 4 cut(s) | 31, 271, 357, 638 |
| BsuRI | GGCC | 1 cut(s) | 338 |
| BtgI | CCRYGG | 2 cut(s) | 339, 401 |
| BtrI | CACGTC | 1 cut(s) | 271 |
| BtsCI | GGATG | 2 cut(s) | 331, 391 |
| BtsIMutI | CAGTG | 2 cut(s) | 500, 664 |
| BveI | ACCTGC | 1 cut(s) | 776 |
| Cac8I | GCNNGC | 3 cut(s) | 149, 207, 565 |
| CfoI | GCGC | 2 cut(s) | 312, 558 |
| Cfr13I | GGNCC | 1 cut(s) | 609 |
| CseI | GACGC | 3 cut(s) | 50, 506, 760 |
| Csp6I | GTAC | 1 cut(s) | 508 |
| CviAII | CATG | 6 cut(s) | 15, 211, 402, 606, 665, 758 |
| CviJI | RGCY | 9 cut(s) | 67, 141, 205, 284, 302, 338, 489, 580, 629 |
| CviKI_1 | RGCY | 9 cut(s) | 67, 141, 205, 284, 302, 338, 489, 580, 629 |
| CviQI | GTAC | 1 cut(s) | 508 |
| DdeI | CTNAG | 1 cut(s) | 380 |
| DpnI | GATC | 3 cut(s) | 92, 521, 663 |
| DpnII | GATC | 3 cut(s) | 90, 519, 661 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 47, 607 |
| DriI | GACNNNNNGTC | 1 cut(s) | 502 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 47, 607 |
| EaeI | YGGCCR | 1 cut(s) | 336 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 502 |
| EciI | GGCGGA | 1 cut(s) | 359 |
| Eco130I | CCWWGG | 2 cut(s) | 401, 412 |
| Eco24I | GRGCYC | 1 cut(s) | 304 |
| Eco47I | GGWCC | 1 cut(s) | 609 |
| Eco57I | CTGAAG | 1 cut(s) | 475 |
| EcoRII | CCWGG | 1 cut(s) | 359 |
| EcoT14I | CCWWGG | 2 cut(s) | 401, 412 |
| EcoT38I | GRGCYC | 1 cut(s) | 304 |
| ErhI | CCWWGG | 2 cut(s) | 401, 412 |
| Esp3I | CGTCTC | 1 cut(s) | 489 |
| FaeI | CATG | 6 cut(s) | 18, 214, 405, 609, 668, 761 |
| FaqI | GGGAC | 2 cut(s) | 140, 732 |
| FatI | CATG | 6 cut(s) | 14, 210, 401, 605, 664, 757 |
| FauI | CCCGC | 1 cut(s) | 708 |
| FbaI | TGATCA | 1 cut(s) | 661 |
| FblI | GTMKAC | 1 cut(s) | 231 |
| Fnu4HI | GCNGC | 5 cut(s) | 45, 285, 371, 374, 627 |
| FokI | GGATG | 2 cut(s) | 318, 398 |
| FriOI | GRGCYC | 1 cut(s) | 304 |
| Fsp4HI | GCNGC | 5 cut(s) | 45, 285, 371, 374, 627 |
| FspBI | CTAG | 2 cut(s) | 413, 564 |
| GlaI | GCGC | 2 cut(s) | 311, 557 |
| GluI | GCNGC | 5 cut(s) | 45, 285, 371, 374, 627 |
| GsuI | CTGGAG | 1 cut(s) | 633 |
| HaeII | RGCGCY | 1 cut(s) | 313 |
| HaeIII | GGCC | 1 cut(s) | 338 |
| HapII | CCGG | 1 cut(s) | 335 |
| HgaI | GACGC | 3 cut(s) | 50, 506, 760 |
| HhaI | GCGC | 2 cut(s) | 312, 558 |
| Hin1I | GRCGYC | 1 cut(s) | 602 |
| Hin1II | CATG | 6 cut(s) | 18, 214, 405, 609, 668, 761 |
| Hin6I | GCGC | 2 cut(s) | 310, 556 |
| HinP1I | GCGC | 2 cut(s) | 310, 556 |
| HincII | GTYRAC | 2 cut(s) | 232, 637 |
| HindII | GTYRAC | 2 cut(s) | 232, 637 |
| HinfI | GANTC | 3 cut(s) | 7, 228, 389 |
| HpaI | GTTAAC | 1 cut(s) | 637 |
| HpaII | CCGG | 1 cut(s) | 335 |
| HphI | GGTGA | 1 cut(s) | 428 |
| Hpy166II | GTNNAC | 4 cut(s) | 232, 549, 637, 655 |
| Hpy188I | TCNGA | 2 cut(s) | 106, 494 |
| Hpy8I | GTNNAC | 4 cut(s) | 232, 549, 637, 655 |
| Hpy99I | CGWCG | 2 cut(s) | 236, 604 |
| HpyAV | CCTTC | 2 cut(s) | 734, 755 |
| HpyCH4III | ACNGT | 2 cut(s) | 504, 659 |
| HpyCH4IV | ACGT | 3 cut(s) | 234, 270, 602 |
| HpyCH4V | TGCA | 6 cut(s) | 14, 151, 257, 484, 626, 785 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 53, 211, 475, 564 |
| HpyF3I | CTNAG | 1 cut(s) | 380 |
| HpySE526I | ACGT | 3 cut(s) | 234, 270, 602 |
| Hsp92I | GRCGYC | 1 cut(s) | 602 |
| Hsp92II | CATG | 6 cut(s) | 18, 214, 405, 609, 668, 761 |
| HspAI | GCGC | 2 cut(s) | 310, 556 |
| Ksp22I | TGATCA | 1 cut(s) | 661 |
| KspAI | GTTAAC | 1 cut(s) | 637 |
| Kzo9I | GATC | 3 cut(s) | 90, 519, 661 |
| LmnI | GCTCC | 2 cut(s) | 251, 346 |
| Lsp1109I | GCAGC | 4 cut(s) | 31, 271, 357, 638 |
| LweI | GCATC | 4 cut(s) | 39, 340, 358, 471 |
| MaeI | CTAG | 2 cut(s) | 413, 564 |
| MaeII | ACGT | 3 cut(s) | 234, 270, 602 |
| MaeIII | GTNAC | 1 cut(s) | 589 |
| MalI | GATC | 3 cut(s) | 92, 521, 663 |
| MboI | GATC | 3 cut(s) | 90, 519, 661 |
| MfeI | CAATTG | 1 cut(s) | 152 |
| MhlI | GDGCHC | 2 cut(s) | 304, 672 |
| MluCI | AATT | 6 cut(s) | 19, 69, 152, 166, 276, 515 |
| MlyI | GAGTC | 2 cut(s) | 237, 398 |
| MnlI | CCTC | 7 cut(s) | 57, 128, 445, 466, 657, 708, 717 |
| MseI | TTAA | 2 cut(s) | 314, 636 |
| MslI | CAYNNNNRTG | 2 cut(s) | 269, 441 |
| MspI | CCGG | 1 cut(s) | 335 |
| MspR9I | CCNGG | 1 cut(s) | 361 |
| MunI | CAATTG | 1 cut(s) | 152 |
| MvaI | CCWGG | 1 cut(s) | 361 |
| MvnI | CGCG | 2 cut(s) | 558, 754 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 53, 211, 475, 564 |
| NcoI | CCATGG | 1 cut(s) | 401 |
| NdeII | GATC | 3 cut(s) | 90, 519, 661 |
| NheI | GCTAGC | 1 cut(s) | 563 |
| NlaIII | CATG | 6 cut(s) | 18, 214, 405, 609, 668, 761 |
| NmuCI | GTSAC | 1 cut(s) | 589 |
| PfeI | GAWTC | 1 cut(s) | 7 |
| PflFI | GACNNNGTC | 1 cut(s) | 587 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 216 |
| PkrI | GCNGC | 5 cut(s) | 46, 286, 372, 375, 628 |
| PleI | GAGTC | 2 cut(s) | 236, 397 |
| PpsI | GAGTC | 2 cut(s) | 236, 397 |
| Psp6I | CCWGG | 1 cut(s) | 359 |
| PspGI | CCWGG | 1 cut(s) | 359 |
| PspPI | GGNCC | 1 cut(s) | 609 |
| PstI | CTGCAG | 1 cut(s) | 628 |
| PsyI | GACNNNGTC | 1 cut(s) | 587 |
| RsaI | GTAC | 1 cut(s) | 509 |
| RsaNI | GTAC | 1 cut(s) | 508 |
| RseI | CAYNNNNRTG | 2 cut(s) | 269, 441 |
| SalI | GTCGAC | 1 cut(s) | 230 |
| SaqAI | TTAA | 2 cut(s) | 314, 636 |
| SatI | GCNGC | 5 cut(s) | 45, 285, 371, 374, 627 |
| Sau3AI | GATC | 3 cut(s) | 90, 519, 661 |
| Sau96I | GGNCC | 1 cut(s) | 609 |
| SchI | GAGTC | 2 cut(s) | 237, 398 |
| ScrFI | CCNGG | 1 cut(s) | 361 |
| SduI | GDGCHC | 2 cut(s) | 304, 672 |
| SetI | ASST | 8 cut(s) | 237, 273, 322, 418, 605, 728, 766, 790 |
| SfaNI | GCATC | 4 cut(s) | 39, 340, 358, 471 |
| SfcI | CTRYAG | 1 cut(s) | 624 |
| SinI | GGWCC | 1 cut(s) | 609 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 269, 441 |
| Sse9I | AATT | 6 cut(s) | 19, 69, 152, 166, 276, 515 |
| SsiI | CCGC | 7 cut(s) | 82, 344, 373, 456, 558, 707, 715 |
| SspMI | CTAG | 2 cut(s) | 413, 564 |
| StyD4I | CCNGG | 1 cut(s) | 359 |
| StyI | CCWWGG | 2 cut(s) | 401, 412 |
| TaaI | ACNGT | 2 cut(s) | 504, 659 |
| TaiI | ACGT | 3 cut(s) | 237, 273, 605 |
| TaqI | TCGA | 4 cut(s) | 89, 120, 231, 522 |
| TasI | AATT | 6 cut(s) | 19, 69, 152, 166, 276, 515 |
| TauI | GCSGC | 1 cut(s) | 376 |
| TfiI | GAWTC | 1 cut(s) | 7 |
| Tru1I | TTAA | 2 cut(s) | 314, 636 |
| Tru9I | TTAA | 2 cut(s) | 314, 636 |
| TscAI | CASTG | 2 cut(s) | 507, 664 |
| TseFI | GTSAC | 1 cut(s) | 589 |
| TseI | GCWGC | 4 cut(s) | 44, 284, 370, 626 |
| Tsp45I | GTSAC | 1 cut(s) | 589 |
| TspDTI | ATGAA | 4 cut(s) | 149, 459, 679, 774 |
| TspGWI | ACGGA | 1 cut(s) | 736 |
| TspRI | CASTG | 2 cut(s) | 507, 664 |
| Tth111I | GACNNNGTC | 1 cut(s) | 587 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 216 |
| VpaK11BI | GGWCC | 1 cut(s) | 609 |
| XmaJI | CCTAGG | 1 cut(s) | 412 |
| XmiI | GTMKAC | 1 cut(s) | 231 |
| XspI | CTAG | 2 cut(s) | 413, 564 |
| ZraI | GACGTC | 1 cut(s) | 603 |