ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DOG1 | PF14144 | 29 - 101 | 6.8e-25 | Seed dormancy control |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 403 |
| Acc36I | ACCTGC | 1 cut(s) | 403 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 136 |
| AciI | CCGC | 3 cut(s) | 316, 477, 485 |
| AcoI | YGGCCR | 3 cut(s) | 417, 456, 489 |
| AcsI | RAATTY | 1 cut(s) | 154 |
| AcuI | CTGAAG | 2 cut(s) | 383, 599 |
| AfaI | GTAC | 1 cut(s) | 374 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 16, 136, 258, 436, 468 |
| AflIII | ACRYGT | 1 cut(s) | 321 |
| AgsI | TTSAA | 1 cut(s) | 589 |
| AjnI | CCWGG | 1 cut(s) | 93 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 581, 613 |
| Alw21I | GWGCWC | 1 cut(s) | 129 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 298, 337 |
| Ama87I | CYCGRG | 1 cut(s) | 462 |
| AoxI | GGCC | 4 cut(s) | 417, 447, 456, 489 |
| ApeKI | GCWGC | 9 cut(s) | 79, 188, 191, 313, 331, 334, 409, 560, 638 |
| ApoI | RAATTY | 1 cut(s) | 154 |
| AspS9I | GGNCC | 2 cut(s) | 231, 448 |
| AsuC2I | CCSGG | 3 cut(s) | 451, 463, 464 |
| AsuHPI | GGTGA | 1 cut(s) | 538 |
| AvaI | CYCGRG | 1 cut(s) | 462 |
| AvaII | GGWCC | 1 cut(s) | 231 |
| BalI | TGGCCA | 2 cut(s) | 419, 458 |
| BanII | GRGCYC | 1 cut(s) | 129 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 356, 388 |
| BbsI | GAAGAC | 1 cut(s) | 440 |
| Bbv12I | GWGCWC | 1 cut(s) | 129 |
| BbvCI | CCTCAGC | 3 cut(s) | 338, 356, 665 |
| BbvI | GCAGC | 9 cut(s) | 66, 175, 178, 300, 343, 346, 421, 547, 625 |
| BccI | CCATC | 1 cut(s) | 394 |
| BceAI | ACGGC | 1 cut(s) | 490 |
| BciT130I | CCWGG | 1 cut(s) | 95 |
| BcnI | CCSGG | 3 cut(s) | 451, 463, 464 |
| BfmI | CTRYAG | 1 cut(s) | 561 |
| BfuAI | ACCTGC | 1 cut(s) | 403 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 455 |
| BisI | GCNGC | 9 cut(s) | 80, 189, 192, 314, 332, 335, 410, 561, 639 |
| BlsI | GCNGC | 9 cut(s) | 81, 190, 193, 315, 333, 336, 411, 562, 640 |
| Bme1390I | CCNGG | 4 cut(s) | 95, 451, 463, 464 |
| Bme18I | GGWCC | 1 cut(s) | 231 |
| BmeT110I | CYCGRG | 1 cut(s) | 462 |
| BmgT120I | GGNCC | 2 cut(s) | 231, 448 |
| BmrFI | CCNGG | 4 cut(s) | 95, 451, 463, 464 |
| BmsI | GCATC | 2 cut(s) | 109, 519 |
| BpiI | GAAGAC | 1 cut(s) | 440 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 11, 43, 292, 324 |
| Bpu10I | CCTNAGC | 3 cut(s) | 338, 356, 665 |
| BpuEI | CTTGAG | 3 cut(s) | 59, 68, 80 |
| BpuMI | CCSGG | 3 cut(s) | 451, 463, 464 |
| BsaJI | CCNNGG | 5 cut(s) | 93, 144, 420, 462, 492 |
| BsaWI | WCCGGW | 1 cut(s) | 429 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 16, 136, 258, 436, 468 |
| Bse1I | ACTGG | 1 cut(s) | 649 |
| Bse3DI | GCAATG | 3 cut(s) | 525, 614, 677 |
| BseBI | CCWGG | 1 cut(s) | 95 |
| BseDI | CCNNGG | 5 cut(s) | 93, 144, 420, 462, 492 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 16, 136, 258, 436, 468 |
| BseMI | GCAATG | 3 cut(s) | 525, 614, 677 |
| BseMII | CTCAG | 6 cut(s) | 290, 329, 347, 524, 599, 656 |
| BseNI | ACTGG | 1 cut(s) | 649 |
| BseRI | GAGGAG | 4 cut(s) | 32, 365, 392, 395 |
| BseXI | GCAGC | 9 cut(s) | 66, 175, 178, 300, 343, 346, 421, 547, 625 |
| BshFI | GGCC | 4 cut(s) | 419, 449, 458, 491 |
| BsiHKAI | GWGCWC | 1 cut(s) | 129 |
| BsiHKCI | CYCGRG | 1 cut(s) | 462 |
| BsiSI | CCGG | 3 cut(s) | 430, 451, 463 |
| BslFI | GGGAC | 1 cut(s) | 76 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 16, 136, 258, 436, 468 |
| BsmFI | GGGAC | 1 cut(s) | 76 |
| BsmI | GAATGC | 1 cut(s) | 253 |
| BsnI | GGCC | 4 cut(s) | 419, 449, 458, 491 |
| BsoBI | CYCGRG | 1 cut(s) | 462 |
| Bsp1286I | GDGCHC | 1 cut(s) | 129 |
| Bsp19I | CCATGG | 1 cut(s) | 420 |
| BspACI | CCGC | 3 cut(s) | 316, 477, 485 |
| BspANI | GGCC | 4 cut(s) | 419, 449, 458, 491 |
| BspCNI | CTCAG | 6 cut(s) | 291, 330, 348, 525, 600, 657 |
| BspHI | TCATGA | 1 cut(s) | 552 |
| BspMAI | CTGCAG | 1 cut(s) | 565 |
| BspMI | ACCTGC | 1 cut(s) | 403 |
| BsrDI | GCAATG | 3 cut(s) | 525, 614, 677 |
| BsrI | ACTGG | 1 cut(s) | 649 |
| BssECI | CCNNGG | 5 cut(s) | 93, 144, 420, 462, 492 |
| BssT1I | CCWWGG | 2 cut(s) | 144, 420 |
| Bst2UI | CCWGG | 1 cut(s) | 95 |
| Bst4CI | ACNGT | 1 cut(s) | 439 |
| BstC8I | GCNNGC | 3 cut(s) | 210, 447, 456 |
| BstDEI | CTNAG | 6 cut(s) | 299, 338, 356, 533, 608, 665 |
| BstDSI | CCRYGG | 1 cut(s) | 420 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 185, 451, 455 |
| BstNI | CCWGG | 1 cut(s) | 95 |
| BstSCI | CCNGG | 4 cut(s) | 93, 449, 461, 462 |
| BstSFI | CTRYAG | 1 cut(s) | 561 |
| BstV1I | GCAGC | 9 cut(s) | 66, 175, 178, 300, 343, 346, 421, 547, 625 |
| BstV2I | GAAGAC | 1 cut(s) | 440 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 241 |
| BsuRI | GGCC | 4 cut(s) | 419, 449, 458, 491 |
| BtgI | CCRYGG | 1 cut(s) | 420 |
| BtsI | GCAGTG | 2 cut(s) | 174, 626 |
| BtsIMutI | CAGTG | 2 cut(s) | 174, 626 |
| BveI | ACCTGC | 1 cut(s) | 403 |
| Cac8I | GCNNGC | 3 cut(s) | 210, 447, 456 |
| CaiI | CAGNNNCTG | 2 cut(s) | 298, 337 |
| CciI | TCATGA | 1 cut(s) | 552 |
| Cfr13I | GGNCC | 2 cut(s) | 231, 448 |
| Cfr9I | CCCGGG | 1 cut(s) | 462 |
| Csp6I | GTAC | 1 cut(s) | 373 |
| CviAII | CATG | 4 cut(s) | 258, 421, 553, 649 |
| CviQI | GTAC | 1 cut(s) | 373 |
| DdeI | CTNAG | 6 cut(s) | 299, 338, 356, 533, 608, 665 |
| EaeI | YGGCCR | 3 cut(s) | 417, 456, 489 |
| Ecl136II | GAGCTC | 1 cut(s) | 127 |
| Eco130I | CCWWGG | 2 cut(s) | 144, 420 |
| Eco24I | GRGCYC | 1 cut(s) | 129 |
| Eco47I | GGWCC | 1 cut(s) | 231 |
| Eco53kI | GAGCTC | 1 cut(s) | 127 |
| Eco57I | CTGAAG | 2 cut(s) | 383, 599 |
| Eco88I | CYCGRG | 1 cut(s) | 462 |
| EcoICRI | GAGCTC | 1 cut(s) | 127 |
| EcoRII | CCWGG | 1 cut(s) | 93 |
| EcoT14I | CCWWGG | 2 cut(s) | 144, 420 |
| EcoT38I | GRGCYC | 1 cut(s) | 129 |
| ErhI | CCWWGG | 2 cut(s) | 144, 420 |
| FaeI | CATG | 4 cut(s) | 261, 424, 556, 652 |
| FaiI | YATR | 5 cut(s) | 114, 259, 422, 554, 650 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 192, 224 |
| FaqI | GGGAC | 1 cut(s) | 76 |
| FatI | CATG | 4 cut(s) | 257, 420, 552, 648 |
| Fnu4HI | GCNGC | 9 cut(s) | 80, 189, 192, 314, 332, 335, 410, 561, 639 |
| FriOI | GRGCYC | 1 cut(s) | 129 |
| Fsp4HI | GCNGC | 9 cut(s) | 80, 189, 192, 314, 332, 335, 410, 561, 639 |
| GluI | GCNGC | 9 cut(s) | 80, 189, 192, 314, 332, 335, 410, 561, 639 |
| HaeIII | GGCC | 4 cut(s) | 419, 449, 458, 491 |
| HapII | CCGG | 3 cut(s) | 430, 451, 463 |
| Hin1II | CATG | 4 cut(s) | 261, 424, 556, 652 |
| HindIII | AAGCTT | 1 cut(s) | 132 |
| HinfI | GANTC | 3 cut(s) | 367, 549, 610 |
| HpaII | CCGG | 3 cut(s) | 430, 451, 463 |
| HphI | GGTGA | 1 cut(s) | 538 |
| Hpy188I | TCNGA | 3 cut(s) | 31, 328, 657 |
| Hpy188III | TCNNGA | 4 cut(s) | 38, 200, 469, 553 |
| HpyAV | CCTTC | 7 cut(s) | 223, 494, 517, 550, 574, 583, 672 |
| HpyCH4III | ACNGT | 1 cut(s) | 439 |
| HpyCH4IV | ACGT | 1 cut(s) | 321 |
| HpyCH4V | TGCA | 6 cut(s) | 122, 160, 179, 518, 563, 619 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 185, 451, 455 |
| HpyF3I | CTNAG | 6 cut(s) | 299, 338, 356, 533, 608, 665 |
| HpySE526I | ACGT | 1 cut(s) | 321 |
| Hsp92II | CATG | 4 cut(s) | 261, 424, 556, 652 |
| LmnI | GCTCC | 4 cut(s) | 132, 352, 442, 687 |
| Lsp1109I | GCAGC | 9 cut(s) | 66, 175, 178, 300, 343, 346, 421, 547, 625 |
| LweI | GCATC | 2 cut(s) | 109, 519 |
| MaeII | ACGT | 1 cut(s) | 321 |
| MaeIII | GTNAC | 1 cut(s) | 148 |
| MboII | GAAGA | 5 cut(s) | 112, 208, 355, 376, 445 |
| MhlI | GDGCHC | 1 cut(s) | 129 |
| MlsI | TGGCCA | 2 cut(s) | 419, 458 |
| MluCI | AATT | 1 cut(s) | 154 |
| MluNI | TGGCCA | 2 cut(s) | 419, 458 |
| MlyI | GAGTC | 2 cut(s) | 558, 619 |
| MmeI | TCCRAC | 4 cut(s) | 94, 251, 522, 579 |
| Mox20I | TGGCCA | 2 cut(s) | 419, 458 |
| MscI | TGGCCA | 2 cut(s) | 419, 458 |
| MseI | TTAA | 1 cut(s) | 660 |
| MslI | CAYNNNNRTG | 3 cut(s) | 117, 201, 619 |
| Msp20I | TGGCCA | 2 cut(s) | 419, 458 |
| MspA1I | CMGCKG | 2 cut(s) | 79, 337 |
| MspI | CCGG | 3 cut(s) | 430, 451, 463 |
| MspR9I | CCNGG | 4 cut(s) | 95, 451, 463, 464 |
| Mva1269I | GAATGC | 1 cut(s) | 253 |
| MvaI | CCWGG | 1 cut(s) | 95 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 185, 451, 455 |
| NciI | CCSGG | 3 cut(s) | 451, 463, 464 |
| NcoI | CCATGG | 1 cut(s) | 420 |
| NlaIII | CATG | 4 cut(s) | 261, 424, 556, 652 |
| NmeAIII | GCCGAG | 2 cut(s) | 289, 517 |
| NmuCI | GTSAC | 1 cut(s) | 148 |
| PagI | TCATGA | 1 cut(s) | 552 |
| PaqCI | CACCTGC | 1 cut(s) | 403 |
| PctI | GAATGC | 1 cut(s) | 253 |
| PfeI | GAWTC | 1 cut(s) | 367 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 136 |
| PkrI | GCNGC | 9 cut(s) | 81, 190, 193, 315, 333, 336, 411, 562, 640 |
| PleI | GAGTC | 2 cut(s) | 557, 618 |
| PpsI | GAGTC | 2 cut(s) | 557, 618 |
| Psp124BI | GAGCTC | 1 cut(s) | 129 |
| Psp6I | CCWGG | 1 cut(s) | 93 |
| PspGI | CCWGG | 1 cut(s) | 93 |
| PspPI | GGNCC | 2 cut(s) | 231, 448 |
| PstI | CTGCAG | 1 cut(s) | 565 |
| PstNI | CAGNNNCTG | 2 cut(s) | 298, 337 |
| PvuII | CAGCTG | 2 cut(s) | 79, 337 |
| RsaI | GTAC | 1 cut(s) | 374 |
| RsaNI | GTAC | 1 cut(s) | 373 |
| RseI | CAYNNNNRTG | 3 cut(s) | 117, 201, 619 |
| SacI | GAGCTC | 1 cut(s) | 129 |
| SaqAI | TTAA | 1 cut(s) | 660 |
| SatI | GCNGC | 9 cut(s) | 80, 189, 192, 314, 332, 335, 410, 561, 639 |
| Sau96I | GGNCC | 2 cut(s) | 231, 448 |
| SchI | GAGTC | 2 cut(s) | 558, 619 |
| ScrFI | CCNGG | 4 cut(s) | 95, 451, 463, 464 |
| SduI | GDGCHC | 1 cut(s) | 129 |
| SfaNI | GCATC | 2 cut(s) | 109, 519 |
| SfcI | CTRYAG | 1 cut(s) | 561 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 455 |
| SinI | GGWCC | 1 cut(s) | 231 |
| SmaI | CCCGGG | 1 cut(s) | 464 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 117, 201, 619 |
| SmlI | CTYRAG | 3 cut(s) | 38, 59, 83 |
| SmoI | CTYRAG | 3 cut(s) | 38, 59, 83 |
| Sse9I | AATT | 1 cut(s) | 154 |
| SsiI | CCGC | 3 cut(s) | 316, 477, 485 |
| SstI | GAGCTC | 1 cut(s) | 129 |
| StyD4I | CCNGG | 4 cut(s) | 93, 449, 461, 462 |
| StyI | CCWWGG | 2 cut(s) | 144, 420 |
| TaaI | ACNGT | 1 cut(s) | 439 |
| TaiI | ACGT | 1 cut(s) | 324 |
| TasI | AATT | 1 cut(s) | 154 |
| TfiI | GAWTC | 1 cut(s) | 367 |
| Tru1I | TTAA | 1 cut(s) | 660 |
| Tru9I | TTAA | 1 cut(s) | 660 |
| TscAI | CASTG | 2 cut(s) | 181, 626 |
| TseFI | GTSAC | 1 cut(s) | 148 |
| TseI | GCWGC | 9 cut(s) | 79, 188, 191, 313, 331, 334, 409, 560, 638 |
| Tsp45I | GTSAC | 1 cut(s) | 148 |
| TspDTI | ATGAA | 5 cut(s) | 17, 101, 246, 536, 569 |
| TspMI | CCCGGG | 1 cut(s) | 462 |
| TspRI | CASTG | 2 cut(s) | 181, 626 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 136 |
| VpaK11BI | GGWCC | 1 cut(s) | 231 |
| XapI | RAATTY | 1 cut(s) | 154 |
| XmaI | CCCGGG | 1 cut(s) | 462 |