ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 6 - 206 | 6.8e-17 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 171 |
| AciI | CCGC | 1 cut(s) | 444 |
| AclWI | GGATC | 2 cut(s) | 363, 594 |
| AcoI | YGGCCR | 2 cut(s) | 335, 625 |
| AcsI | RAATTY | 1 cut(s) | 562 |
| AfaI | GTAC | 2 cut(s) | 15, 601 |
| AgsI | TTSAA | 4 cut(s) | 67, 143, 376, 427 |
| AjnI | CCWGG | 1 cut(s) | 404 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 105, 137 |
| AluBI | AGCT | 1 cut(s) | 608 |
| AluI | AGCT | 1 cut(s) | 608 |
| Alw21I | GWGCWC | 1 cut(s) | 189 |
| Alw26I | GTCTC | 1 cut(s) | 472 |
| AlwI | GGATC | 2 cut(s) | 363, 594 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 646 |
| AoxI | GGCC | 3 cut(s) | 335, 460, 625 |
| ApeKI | GCWGC | 1 cut(s) | 640 |
| ApoI | RAATTY | 1 cut(s) | 562 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 147 |
| AspLEI | GCGC | 1 cut(s) | 172 |
| AspS9I | GGNCC | 2 cut(s) | 461, 542 |
| AvaII | GGWCC | 1 cut(s) | 542 |
| BalI | TGGCCA | 2 cut(s) | 337, 627 |
| BbsI | GAAGAC | 1 cut(s) | 246 |
| Bbv12I | GWGCWC | 1 cut(s) | 189 |
| BbvI | GCAGC | 1 cut(s) | 652 |
| BccI | CCATC | 2 cut(s) | 281, 303 |
| BceAI | ACGGC | 2 cut(s) | 15, 475 |
| BciT130I | CCWGG | 1 cut(s) | 406 |
| BcoDI | GTCTC | 1 cut(s) | 472 |
| BfaI | CTAG | 6 cut(s) | 57, 306, 530, 633, 654, 688 |
| BglII | AGATCT | 4 cut(s) | 70, 145, 379, 664 |
| BisI | GCNGC | 1 cut(s) | 641 |
| BlsI | GCNGC | 1 cut(s) | 642 |
| Bme1390I | CCNGG | 1 cut(s) | 406 |
| Bme18I | GGWCC | 1 cut(s) | 542 |
| BmgT120I | GGNCC | 2 cut(s) | 461, 542 |
| BmrFI | CCNGG | 1 cut(s) | 406 |
| BmsI | GCATC | 2 cut(s) | 383, 652 |
| BpiI | GAAGAC | 1 cut(s) | 246 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 507, 539 |
| BsaAI | YACGTR | 1 cut(s) | 341 |
| BsaBI | GATNNNNATC | 2 cut(s) | 354, 663 |
| BsaJI | CCNNGG | 3 cut(s) | 31, 404, 405 |
| Bse8I | GATNNNNATC | 2 cut(s) | 354, 663 |
| BseBI | CCWGG | 1 cut(s) | 406 |
| BseDI | CCNNGG | 3 cut(s) | 31, 404, 405 |
| BseGI | GGATG | 1 cut(s) | 16 |
| BseJI | GATNNNNATC | 2 cut(s) | 354, 663 |
| BseMII | CTCAG | 5 cut(s) | 31, 95, 202, 479, 672 |
| BseXI | GCAGC | 1 cut(s) | 652 |
| BshFI | GGCC | 3 cut(s) | 337, 462, 627 |
| BsiHKAI | GWGCWC | 1 cut(s) | 189 |
| BsiSI | CCGG | 1 cut(s) | 580 |
| BsmAI | GTCTC | 1 cut(s) | 472 |
| BsnI | GGCC | 3 cut(s) | 337, 462, 627 |
| Bsp1286I | GDGCHC | 1 cut(s) | 189 |
| Bsp143I | GATC | 9 cut(s) | 70, 75, 96, 145, 355, 379, 526, 586, 664 |
| BspACI | CCGC | 1 cut(s) | 444 |
| BspANI | GGCC | 3 cut(s) | 337, 462, 627 |
| BspCNI | CTCAG | 5 cut(s) | 30, 94, 201, 478, 673 |
| BspPI | GGATC | 2 cut(s) | 363, 594 |
| BssECI | CCNNGG | 3 cut(s) | 31, 404, 405 |
| BssMI | GATC | 9 cut(s) | 70, 75, 96, 145, 355, 379, 526, 586, 664 |
| Bst2UI | CCWGG | 1 cut(s) | 406 |
| Bst4CI | ACNGT | 1 cut(s) | 372 |
| BstBAI | YACGTR | 1 cut(s) | 341 |
| BstC8I | GCNNGC | 3 cut(s) | 137, 335, 606 |
| BstDEI | CTNAG | 6 cut(s) | 17, 81, 188, 383, 465, 681 |
| BstDSI | CCRYGG | 1 cut(s) | 31 |
| BstF5I | GGATG | 1 cut(s) | 16 |
| BstHHI | GCGC | 1 cut(s) | 172 |
| BstKTI | GATC | 9 cut(s) | 73, 78, 99, 148, 358, 382, 529, 589, 667 |
| BstMAI | GTCTC | 1 cut(s) | 472 |
| BstMBI | GATC | 9 cut(s) | 70, 75, 96, 145, 355, 379, 526, 586, 664 |
| BstNI | CCWGG | 1 cut(s) | 406 |
| BstSCI | CCNGG | 1 cut(s) | 404 |
| BstV1I | GCAGC | 1 cut(s) | 652 |
| BstV2I | GAAGAC | 1 cut(s) | 246 |
| BstX2I | RGATCY | 4 cut(s) | 70, 145, 379, 664 |
| BstYI | RGATCY | 4 cut(s) | 70, 145, 379, 664 |
| BsuRI | GGCC | 3 cut(s) | 337, 462, 627 |
| BtgI | CCRYGG | 1 cut(s) | 31 |
| BtsCI | GGATG | 1 cut(s) | 16 |
| BtsI | GCAGTG | 1 cut(s) | 49 |
| BtsIMutI | CAGTG | 2 cut(s) | 49, 196 |
| Cac8I | GCNNGC | 3 cut(s) | 137, 335, 606 |
| CaiI | CAGNNNCTG | 1 cut(s) | 646 |
| CfoI | GCGC | 1 cut(s) | 172 |
| Cfr13I | GGNCC | 2 cut(s) | 461, 542 |
| Csp6I | GTAC | 2 cut(s) | 14, 600 |
| CviAII | CATG | 3 cut(s) | 130, 555, 629 |
| CviQI | GTAC | 2 cut(s) | 14, 600 |
| DdeI | CTNAG | 6 cut(s) | 17, 81, 188, 383, 465, 681 |
| DpnI | GATC | 9 cut(s) | 72, 77, 98, 147, 357, 381, 528, 588, 666 |
| DpnII | GATC | 9 cut(s) | 70, 75, 96, 145, 355, 379, 526, 586, 664 |
| EaeI | YGGCCR | 2 cut(s) | 335, 625 |
| Eco47I | GGWCC | 1 cut(s) | 542 |
| EcoO109I | RGGNCCY | 1 cut(s) | 542 |
| EcoRI | GAATTC | 1 cut(s) | 562 |
| EcoRII | CCWGG | 1 cut(s) | 404 |
| FaeI | CATG | 3 cut(s) | 133, 558, 632 |
| FatI | CATG | 3 cut(s) | 129, 554, 628 |
| FauI | CCCGC | 1 cut(s) | 437 |
| Fnu4HI | GCNGC | 1 cut(s) | 641 |
| FokI | GGATG | 1 cut(s) | 23 |
| Fsp4HI | GCNGC | 1 cut(s) | 641 |
| FspBI | CTAG | 6 cut(s) | 57, 306, 530, 633, 654, 688 |
| FspI | TGCGCA | 1 cut(s) | 171 |
| GlaI | GCGC | 1 cut(s) | 171 |
| GluI | GCNGC | 1 cut(s) | 641 |
| HaeIII | GGCC | 3 cut(s) | 337, 462, 627 |
| HapII | CCGG | 1 cut(s) | 580 |
| HhaI | GCGC | 1 cut(s) | 172 |
| Hin1II | CATG | 3 cut(s) | 133, 558, 632 |
| Hin6I | GCGC | 1 cut(s) | 170 |
| HinP1I | GCGC | 1 cut(s) | 170 |
| HinfI | GANTC | 3 cut(s) | 47, 85, 659 |
| HpaII | CCGG | 1 cut(s) | 580 |
| Hpy188I | TCNGA | 7 cut(s) | 75, 84, 153, 468, 568, 664, 682 |
| Hpy188III | TCNNGA | 2 cut(s) | 497, 668 |
| HpyAV | CCTTC | 2 cut(s) | 188, 232 |
| HpyCH4III | ACNGT | 1 cut(s) | 372 |
| HpyCH4IV | ACGT | 1 cut(s) | 340 |
| HpyCH4V | TGCA | 2 cut(s) | 42, 640 |
| HpyF3I | CTNAG | 6 cut(s) | 17, 81, 188, 383, 465, 681 |
| HpySE526I | ACGT | 1 cut(s) | 340 |
| Hsp92II | CATG | 3 cut(s) | 133, 558, 632 |
| HspAI | GCGC | 1 cut(s) | 170 |
| Kzo9I | GATC | 9 cut(s) | 70, 75, 96, 145, 355, 379, 526, 586, 664 |
| Lsp1109I | GCAGC | 1 cut(s) | 652 |
| LweI | GCATC | 2 cut(s) | 383, 652 |
| MaeI | CTAG | 6 cut(s) | 57, 306, 530, 633, 654, 688 |
| MaeII | ACGT | 1 cut(s) | 340 |
| MaeIII | GTNAC | 4 cut(s) | 125, 386, 614, 648 |
| MalI | GATC | 9 cut(s) | 72, 77, 98, 147, 357, 381, 528, 588, 666 |
| MboI | GATC | 9 cut(s) | 70, 75, 96, 145, 355, 379, 526, 586, 664 |
| MboII | GAAGA | 5 cut(s) | 140, 155, 246, 249, 669 |
| MflI | RGATCY | 4 cut(s) | 70, 145, 379, 664 |
| MhlI | GDGCHC | 1 cut(s) | 189 |
| MlsI | TGGCCA | 2 cut(s) | 337, 627 |
| MluCI | AATT | 7 cut(s) | 25, 120, 245, 282, 471, 562, 673 |
| MluNI | TGGCCA | 2 cut(s) | 337, 627 |
| MnlI | CCTC | 3 cut(s) | 474, 482, 676 |
| Mox20I | TGGCCA | 2 cut(s) | 337, 627 |
| MroXI | GAANNNNTTC | 1 cut(s) | 147 |
| MscI | TGGCCA | 2 cut(s) | 337, 627 |
| MseI | TTAA | 1 cut(s) | 317 |
| MslI | CAYNNNNRTG | 1 cut(s) | 134 |
| Msp20I | TGGCCA | 2 cut(s) | 337, 627 |
| MspI | CCGG | 1 cut(s) | 580 |
| MspR9I | CCNGG | 1 cut(s) | 406 |
| MvaI | CCWGG | 1 cut(s) | 406 |
| NdeII | GATC | 9 cut(s) | 70, 75, 96, 145, 355, 379, 526, 586, 664 |
| NlaIII | CATG | 3 cut(s) | 133, 558, 632 |
| NmuCI | GTSAC | 2 cut(s) | 386, 614 |
| NsbI | TGCGCA | 1 cut(s) | 171 |
| PasI | CCCWGGG | 1 cut(s) | 405 |
| PdmI | GAANNNNTTC | 1 cut(s) | 147 |
| PfeI | GAWTC | 3 cut(s) | 47, 85, 659 |
| PkrI | GCNGC | 1 cut(s) | 642 |
| Ppu21I | YACGTR | 1 cut(s) | 341 |
| PpuMI | RGGWCCY | 1 cut(s) | 542 |
| Psp5II | RGGWCCY | 1 cut(s) | 542 |
| Psp6I | CCWGG | 1 cut(s) | 404 |
| PspGI | CCWGG | 1 cut(s) | 404 |
| PspPI | GGNCC | 2 cut(s) | 461, 542 |
| PspPPI | RGGWCCY | 1 cut(s) | 542 |
| PstNI | CAGNNNCTG | 1 cut(s) | 646 |
| PsuI | RGATCY | 4 cut(s) | 70, 145, 379, 664 |
| RsaI | GTAC | 2 cut(s) | 15, 601 |
| RsaNI | GTAC | 2 cut(s) | 14, 600 |
| RseI | CAYNNNNRTG | 1 cut(s) | 134 |
| SaqAI | TTAA | 1 cut(s) | 317 |
| SatI | GCNGC | 1 cut(s) | 641 |
| Sau3AI | GATC | 9 cut(s) | 70, 75, 96, 145, 355, 379, 526, 586, 664 |
| Sau96I | GGNCC | 2 cut(s) | 461, 542 |
| ScrFI | CCNGG | 1 cut(s) | 406 |
| SduI | GDGCHC | 1 cut(s) | 189 |
| SetI | ASST | 8 cut(s) | 199, 243, 325, 343, 544, 610, 621, 655 |
| SfaNI | GCATC | 2 cut(s) | 383, 652 |
| SinI | GGWCC | 1 cut(s) | 542 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 134 |
| Sse9I | AATT | 7 cut(s) | 25, 120, 245, 282, 471, 562, 673 |
| SsiI | CCGC | 1 cut(s) | 444 |
| SspMI | CTAG | 6 cut(s) | 57, 306, 530, 633, 654, 688 |
| StyD4I | CCNGG | 1 cut(s) | 404 |
| TaaI | ACNGT | 1 cut(s) | 372 |
| TaiI | ACGT | 1 cut(s) | 343 |
| TaqI | TCGA | 4 cut(s) | 50, 88, 525, 589 |
| TaqII | GACCGA | 1 cut(s) | 405 |
| TasI | AATT | 7 cut(s) | 25, 120, 245, 282, 471, 562, 673 |
| TatI | WGTACW | 1 cut(s) | 13 |
| TfiI | GAWTC | 3 cut(s) | 47, 85, 659 |
| Tru1I | TTAA | 1 cut(s) | 317 |
| Tru9I | TTAA | 1 cut(s) | 317 |
| TscAI | CASTG | 2 cut(s) | 49, 196 |
| TseFI | GTSAC | 2 cut(s) | 386, 614 |
| TseI | GCWGC | 1 cut(s) | 640 |
| Tsp45I | GTSAC | 2 cut(s) | 386, 614 |
| TspRI | CASTG | 2 cut(s) | 49, 196 |
| VpaK11BI | GGWCC | 1 cut(s) | 542 |
| XapI | RAATTY | 1 cut(s) | 562 |
| XmnI | GAANNNNTTC | 1 cut(s) | 147 |
| XspI | CTAG | 6 cut(s) | 57, 306, 530, 633, 654, 688 |