Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 377 - 429 | 9e-08 | Pentatricopeptide repeat domain |
| PPR_long | PF17177 | 379 - 467 | 9.5e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR_2 | PF13041 | 384 - 426 | 4.3e-09 | PPR repeat family |
| PPR_3 | PF13812 | 404 - 462 | 1e-13 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 413 - 445 | 1.1e-10 | PPR repeat |
| PPR_2 | PF13041 | 416 - 464 | 2.5e-16 | PPR repeat family |
| PPR | PF01535 | 419 - 449 | 9.6e-07 | PPR repeat |
| PPR_3 | PF13812 | 440 - 500 | 2.1e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 448 - 480 | 1.2e-06 | PPR repeat |
| PPR | PF01535 | 454 - 484 | 8.7e-06 | PPR repeat |
| PPR_2 | PF13041 | 456 - 500 | 9.8e-10 | PPR repeat family |
| PPR_long | PF17177 | 469 - 572 | 2e-07 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 476 - 532 | 4e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 483 - 515 | 1.5e-08 | PPR repeat |
| PPR | PF01535 | 489 - 519 | 1.7e-06 | PPR repeat |
| PPR_2 | PF13041 | 491 - 530 | 1e-11 | PPR repeat family |
| PPR_3 | PF13812 | 509 - 569 | 1.4e-07 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 521 - 568 | 3.5e-13 | PPR repeat family |
| PPR | PF01535 | 559 - 588 | 4.6e-06 | PPR repeat |
| PPR_3 | PF13812 | 619 - 673 | 8.7e-07 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 626 - 673 | 5e-09 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 462, 2336 |
| Acc16I | TGCGCA | 1 cut(s) | 2280 |
| Acc36I | ACCTGC | 1 cut(s) | 1331 |
| Acc65I | GGTACC | 1 cut(s) | 1768 |
| AccB1I | GGYRCC | 2 cut(s) | 1199, 1768 |
| AccBSI | CCGCTC | 1 cut(s) | 2623 |
| AccII | CGCG | 3 cut(s) | 21, 1290, 1359 |
| AciI | CCGC | 4 cut(s) | 72, 1357, 2467, 2623 |
| AclI | AACGTT | 1 cut(s) | 357 |
| AclWI | GGATC | 4 cut(s) | 202, 661, 1554, 2172 |
| AcoI | YGGCCR | 3 cut(s) | 1504, 1705, 2128 |
| AcsI | RAATTY | 6 cut(s) | 10, 100, 1065, 1077, 2048, 2557 |
| AcuI | CTGAAG | 2 cut(s) | 138, 612 |
| AcyI | GRCGYC | 2 cut(s) | 1200, 2301 |
| AfaI | GTAC | 5 cut(s) | 637, 837, 1372, 1770, 2362 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 141, 1608, 1787, 1842, 2117, 2553 |
| AflIII | ACRYGT | 2 cut(s) | 2344, 2523 |
| AgsI | TTSAA | 6 cut(s) | 931, 965, 1041, 1072, 1082, 1303 |
| AhlI | ACTAGT | 1 cut(s) | 587 |
| AjnI | CCWGG | 3 cut(s) | 1187, 1566, 1835 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1725, 1757, 1879, 1911 |
| AleI | CACNNNNGTG | 1 cut(s) | 590 |
| Alw21I | GWGCWC | 3 cut(s) | 946, 1926, 2064 |
| Alw26I | GTCTC | 3 cut(s) | 541, 1613, 2592 |
| Alw44I | GTGCAC | 2 cut(s) | 942, 1922 |
| AlwI | GGATC | 4 cut(s) | 202, 661, 1554, 2172 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 338 |
| AoxI | GGCC | 7 cut(s) | 868, 1000, 1504, 1599, 1705, 1789, 2128 |
| ApaI | GGGCCC | 1 cut(s) | 1004 |
| ApaLI | GTGCAC | 2 cut(s) | 942, 1922 |
| ApoI | RAATTY | 6 cut(s) | 10, 100, 1065, 1077, 2048, 2557 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1319 |
| Asp718I | GGTACC | 1 cut(s) | 1768 |
| AspLEI | GCGC | 5 cut(s) | 21, 23, 1202, 1292, 2281 |
| AspS9I | GGNCC | 4 cut(s) | 869, 1000, 1001, 2120 |
| AsuC2I | CCSGG | 1 cut(s) | 2422 |
| AsuHPI | GGTGA | 8 cut(s) | 1240, 1354, 1514, 1564, 1757, 2025, 2506, 2536 |
| AsuNHI | GCTAGC | 1 cut(s) | 350 |
| AvaII | GGWCC | 1 cut(s) | 2120 |
| BaeGI | GKGCMC | 5 cut(s) | 136, 946, 1004, 1152, 1926 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2352, 2385 |
| BalI | TGGCCA | 3 cut(s) | 1506, 1707, 2130 |
| BanI | GGYRCC | 2 cut(s) | 1199, 1768 |
| BanII | GRGCYC | 3 cut(s) | 1004, 2064, 2244 |
| BbsI | GAAGAC | 1 cut(s) | 158 |
| Bbv12I | GWGCWC | 3 cut(s) | 946, 1926, 2064 |
| BceAI | ACGGC | 2 cut(s) | 2288, 2480 |
| BciT130I | CCWGG | 3 cut(s) | 1189, 1568, 1837 |
| BclI | TGATCA | 1 cut(s) | 1482 |
| BcnI | CCSGG | 1 cut(s) | 2422 |
| BcoDI | GTCTC | 3 cut(s) | 541, 1613, 2592 |
| BcuI | ACTAGT | 1 cut(s) | 587 |
| BfaI | CTAG | 4 cut(s) | 54, 351, 588, 861 |
| BfmI | CTRYAG | 3 cut(s) | 399, 1008, 1515 |
| BfoI | RGCGCY | 1 cut(s) | 1203 |
| BfuAI | ACCTGC | 1 cut(s) | 1331 |
| BlpI | GCTNAGC | 1 cut(s) | 798 |
| Bme1390I | CCNGG | 4 cut(s) | 1189, 1568, 1837, 2422 |
| Bme18I | GGWCC | 1 cut(s) | 2120 |
| BmgT120I | GGNCC | 4 cut(s) | 869, 1000, 1001, 2120 |
| BmiI | GGNNCC | 5 cut(s) | 1001, 1002, 1201, 1770, 2122 |
| BmrFI | CCNGG | 4 cut(s) | 1189, 1568, 1837, 2422 |
| BmtI | GCTAGC | 1 cut(s) | 354 |
| BpiI | GAAGAC | 1 cut(s) | 158 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2303, 2335 |
| BpmI | CTGGAG | 2 cut(s) | 523, 738 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1969 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 798 |
| BpuEI | CTTGAG | 3 cut(s) | 28, 1742, 2228 |
| BpuMI | CCSGG | 1 cut(s) | 2422 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1845 |
| BsaHI | GRCGYC | 2 cut(s) | 1200, 2301 |
| BsaJI | CCNNGG | 7 cut(s) | 528, 1164, 1177, 1417, 1492, 1836, 2421 |
| BsaWI | WCCGGW | 1 cut(s) | 191 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 225, 255 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 141, 1608, 1787, 1842, 2117, 2553 |
| Bse118I | RCCGGY | 1 cut(s) | 1524 |
| Bse1I | ACTGG | 2 cut(s) | 540, 678 |
| Bse3DI | GCAATG | 2 cut(s) | 1317, 1860 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1845 |
| BseBI | CCWGG | 3 cut(s) | 1189, 1568, 1837 |
| BseDI | CCNNGG | 7 cut(s) | 528, 1164, 1177, 1417, 1492, 1836, 2421 |
| BseJI | GATNNNNATC | 1 cut(s) | 1845 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 141, 1608, 1787, 1842, 2117, 2553 |
| BseMI | GCAATG | 2 cut(s) | 1317, 1860 |
| BseMII | CTCAG | 7 cut(s) | 82, 258, 603, 741, 812, 1918, 2023 |
| BseNI | ACTGG | 2 cut(s) | 540, 678 |
| BsePI | GCGCGC | 1 cut(s) | 19 |
| BseRI | GAGGAG | 2 cut(s) | 1739, 2264 |
| BseSI | GKGCMC | 5 cut(s) | 136, 946, 1004, 1152, 1926 |
| BsgI | GTGCAG | 2 cut(s) | 2504, 2528 |
| Bsh1236I | CGCG | 3 cut(s) | 21, 1290, 1359 |
| BshFI | GGCC | 7 cut(s) | 870, 1002, 1506, 1601, 1707, 1791, 2130 |
| BshNI | GGYRCC | 2 cut(s) | 1199, 1768 |
| BsiHKAI | GWGCWC | 3 cut(s) | 946, 1926, 2064 |
| BsiSI | CCGG | 3 cut(s) | 192, 1525, 2421 |
| BsiWI | CGTACG | 1 cut(s) | 635 |
| BslFI | GGGAC | 1 cut(s) | 2475 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 141, 1608, 1787, 1842, 2117, 2553 |
| BsmAI | GTCTC | 3 cut(s) | 541, 1613, 2592 |
| BsmFI | GGGAC | 1 cut(s) | 2475 |
| BsmI | GAATGC | 1 cut(s) | 366 |
| BsnI | GGCC | 7 cut(s) | 870, 1002, 1506, 1601, 1707, 1791, 2130 |
| Bsp120I | GGGCCC | 1 cut(s) | 1000 |
| Bsp1286I | GDGCHC | 7 cut(s) | 136, 946, 1004, 1152, 1926, 2064, 2244 |
| Bsp1407I | TGTACA | 2 cut(s) | 835, 1370 |
| Bsp143I | GATC | 8 cut(s) | 194, 329, 653, 1084, 1482, 1546, 2030, 2164 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 798 |
| Bsp19I | CCATGG | 1 cut(s) | 1164 |
| BspACI | CCGC | 4 cut(s) | 72, 1357, 2467, 2623 |
| BspANI | GGCC | 7 cut(s) | 870, 1002, 1506, 1601, 1707, 1791, 2130 |
| BspCNI | CTCAG | 7 cut(s) | 81, 259, 604, 740, 811, 1917, 2022 |
| BspFNI | CGCG | 3 cut(s) | 21, 1290, 1359 |
| BspHI | TCATGA | 2 cut(s) | 763, 1584 |
| BspLI | GGNNCC | 5 cut(s) | 1001, 1002, 1201, 1770, 2122 |
| BspMAI | CTGCAG | 2 cut(s) | 1012, 1519 |
| BspMI | ACCTGC | 1 cut(s) | 1331 |
| BspOI | GCTAGC | 1 cut(s) | 354 |
| BspPI | GGATC | 4 cut(s) | 202, 661, 1554, 2172 |
| BspT107I | GGYRCC | 2 cut(s) | 1199, 1768 |
| BsrBI | CCGCTC | 1 cut(s) | 2623 |
| BsrDI | GCAATG | 2 cut(s) | 1317, 1860 |
| BsrFI | RCCGGY | 1 cut(s) | 1524 |
| BsrGI | TGTACA | 2 cut(s) | 835, 1370 |
| BsrI | ACTGG | 2 cut(s) | 540, 678 |
| BssAI | RCCGGY | 1 cut(s) | 1524 |
| BssECI | CCNNGG | 7 cut(s) | 528, 1164, 1177, 1417, 1492, 1836, 2421 |
| BssHII | GCGCGC | 1 cut(s) | 19 |
| BssMI | GATC | 8 cut(s) | 194, 329, 653, 1084, 1482, 1546, 2030, 2164 |
| BssNI | GRCGYC | 2 cut(s) | 1200, 2301 |
| BssT1I | CCWWGG | 4 cut(s) | 1164, 1177, 1417, 1492 |
| Bst2UI | CCWGG | 3 cut(s) | 1189, 1568, 1837 |
| Bst6I | CTCTTC | 1 cut(s) | 1905 |
| BstACI | GRCGYC | 2 cut(s) | 1200, 2301 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2506, 2515 |
| BstAUI | TGTACA | 2 cut(s) | 835, 1370 |
| BstC8I | GCNNGC | 6 cut(s) | 21, 150, 352, 1504, 1599, 2502 |
| BstDSI | CCRYGG | 2 cut(s) | 528, 1164 |
| BstEII | GGTNACC | 2 cut(s) | 35, 1570 |
| BstFNI | CGCG | 3 cut(s) | 21, 1290, 1359 |
| BstH2I | RGCGCY | 1 cut(s) | 1203 |
| BstHHI | GCGC | 5 cut(s) | 21, 23, 1202, 1292, 2281 |
| BstKTI | GATC | 8 cut(s) | 197, 332, 656, 1087, 1485, 1549, 2033, 2167 |
| BstMAI | GTCTC | 3 cut(s) | 541, 1613, 2592 |
| BstMBI | GATC | 8 cut(s) | 194, 329, 653, 1084, 1482, 1546, 2030, 2164 |
| BstNI | CCWGG | 3 cut(s) | 1189, 1568, 1837 |
| BstNSI | RCATGY | 4 cut(s) | 1648, 2348, 2504, 2527 |
| BstPI | GGTNACC | 2 cut(s) | 35, 1570 |
| BstSCI | CCNGG | 4 cut(s) | 1187, 1566, 1835, 2420 |
| BstSFI | CTRYAG | 3 cut(s) | 399, 1008, 1515 |
| BstSLI | GKGCMC | 5 cut(s) | 136, 946, 1004, 1152, 1926 |
| BstUI | CGCG | 3 cut(s) | 21, 1290, 1359 |
| BstV2I | GAAGAC | 1 cut(s) | 158 |
| BstX2I | RGATCY | 2 cut(s) | 194, 2164 |
| BstYI | RGATCY | 2 cut(s) | 194, 2164 |
| BsuRI | GGCC | 7 cut(s) | 870, 1002, 1506, 1601, 1707, 1791, 2130 |
| BtgI | CCRYGG | 2 cut(s) | 528, 1164 |
| BtgZI | GCGATG | 1 cut(s) | 372 |
| BtsI | GCAGTG | 3 cut(s) | 246, 944, 2511 |
| BtsIMutI | CAGTG | 8 cut(s) | 246, 510, 547, 748, 944, 1480, 1912, 2511 |
| BveI | ACCTGC | 1 cut(s) | 1331 |
| Cac8I | GCNNGC | 6 cut(s) | 21, 150, 352, 1504, 1599, 2502 |
| CaiI | CAGNNNCTG | 1 cut(s) | 338 |
| CciI | TCATGA | 2 cut(s) | 763, 1584 |
| CfoI | GCGC | 5 cut(s) | 21, 23, 1202, 1292, 2281 |
| Cfr10I | RCCGGY | 1 cut(s) | 1524 |
| Cfr13I | GGNCC | 4 cut(s) | 869, 1000, 1001, 2120 |
| CseI | GACGC | 5 cut(s) | 1055, 1316, 1348, 1862, 2309 |
| CsiI | ACCWGGT | 1 cut(s) | 1566 |
| Csp6I | GTAC | 5 cut(s) | 636, 836, 1371, 1769, 2361 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1150, 1185 |
| CviQI | GTAC | 5 cut(s) | 636, 836, 1371, 1769, 2361 |
| DinI | GGCGCC | 1 cut(s) | 1201 |
| DpnI | GATC | 8 cut(s) | 196, 331, 655, 1086, 1484, 1548, 2032, 2166 |
| DpnII | GATC | 8 cut(s) | 194, 329, 653, 1084, 1482, 1546, 2030, 2164 |
| DraI | TTTAAA | 1 cut(s) | 1629 |
| EaeI | YGGCCR | 3 cut(s) | 1504, 1705, 2128 |
| Eam1104I | CTCTTC | 1 cut(s) | 1905 |
| EarI | CTCTTC | 1 cut(s) | 1905 |
| EciI | GGCGGA | 1 cut(s) | 2482 |
| Ecl136II | GAGCTC | 1 cut(s) | 2062 |
| Eco130I | CCWWGG | 4 cut(s) | 1164, 1177, 1417, 1492 |
| Eco24I | GRGCYC | 3 cut(s) | 1004, 2064, 2244 |
| Eco32I | GATATC | 1 cut(s) | 1718 |
| Eco47I | GGWCC | 1 cut(s) | 2120 |
| Eco53kI | GAGCTC | 1 cut(s) | 2062 |
| Eco57I | CTGAAG | 2 cut(s) | 138, 612 |
| Eco91I | GGTNACC | 2 cut(s) | 35, 1570 |
| EcoICRI | GAGCTC | 1 cut(s) | 2062 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1000, 1001, 2120 |
| EcoO65I | GGTNACC | 2 cut(s) | 35, 1570 |
| EcoRI | GAATTC | 1 cut(s) | 2557 |
| EcoRII | CCWGG | 3 cut(s) | 1187, 1566, 1835 |
| EcoRV | GATATC | 1 cut(s) | 1718 |
| EcoT14I | CCWWGG | 4 cut(s) | 1164, 1177, 1417, 1492 |
| EcoT22I | ATGCAT | 2 cut(s) | 2175, 2631 |
| EcoT38I | GRGCYC | 3 cut(s) | 1004, 2064, 2244 |
| EgeI | GGCGCC | 1 cut(s) | 1201 |
| EheI | GGCGCC | 1 cut(s) | 1201 |
| ErhI | CCWWGG | 4 cut(s) | 1164, 1177, 1417, 1492 |
| FaqI | GGGAC | 1 cut(s) | 2475 |
| FauI | CCCGC | 1 cut(s) | 65 |
| FauNDI | CATATG | 1 cut(s) | 2038 |
| FbaI | TGATCA | 1 cut(s) | 1482 |
| FriOI | GRGCYC | 3 cut(s) | 1004, 2064, 2244 |
| FspBI | CTAG | 4 cut(s) | 54, 351, 588, 861 |
| FspI | TGCGCA | 1 cut(s) | 2280 |
| GlaI | GCGC | 5 cut(s) | 20, 22, 1201, 1291, 2280 |
| GsuI | CTGGAG | 2 cut(s) | 523, 738 |
| HaeII | RGCGCY | 1 cut(s) | 1203 |
| HaeIII | GGCC | 7 cut(s) | 870, 1002, 1506, 1601, 1707, 1791, 2130 |
| HapII | CCGG | 3 cut(s) | 192, 1525, 2421 |
| HgaI | GACGC | 5 cut(s) | 1055, 1316, 1348, 1862, 2309 |
| HhaI | GCGC | 5 cut(s) | 21, 23, 1202, 1292, 2281 |
| Hin1I | GRCGYC | 2 cut(s) | 1200, 2301 |
| Hin6I | GCGC | 5 cut(s) | 19, 21, 1200, 1290, 2279 |
| HinP1I | GCGC | 5 cut(s) | 19, 21, 1200, 1290, 2279 |
| HincII | GTYRAC | 2 cut(s) | 277, 1244 |
| HindII | GTYRAC | 2 cut(s) | 277, 1244 |
| HinfI | GANTC | 9 cut(s) | 219, 254, 466, 534, 751, 1134, 1273, 2585, 2609 |
| HpaII | CCGG | 3 cut(s) | 192, 1525, 2421 |
| HphI | GGTGA | 8 cut(s) | 1240, 1354, 1514, 1564, 1757, 2025, 2506, 2536 |
| Hpy166II | GTNNAC | 5 cut(s) | 277, 944, 1244, 1373, 1924 |
| Hpy8I | GTNNAC | 5 cut(s) | 277, 944, 1244, 1373, 1924 |
| HpyAV | CCTTC | 7 cut(s) | 213, 367, 765, 1014, 1229, 1992, 2237 |
| HpyCH4IV | ACGT | 2 cut(s) | 357, 2136 |
| HpySE526I | ACGT | 2 cut(s) | 357, 2136 |
| Hsp92I | GRCGYC | 2 cut(s) | 1200, 2301 |
| HspAI | GCGC | 5 cut(s) | 19, 21, 1200, 1290, 2279 |
| KasI | GGCGCC | 1 cut(s) | 1199 |
| KpnI | GGTACC | 1 cut(s) | 1772 |
| Ksp22I | TGATCA | 1 cut(s) | 1482 |
| Kzo9I | GATC | 8 cut(s) | 194, 329, 653, 1084, 1482, 1546, 2030, 2164 |
| LmnI | GCTCC | 3 cut(s) | 928, 1863, 2620 |
| MabI | ACCWGGT | 1 cut(s) | 1566 |
| MaeI | CTAG | 4 cut(s) | 54, 351, 588, 861 |
| MaeII | ACGT | 2 cut(s) | 357, 2136 |
| MalI | GATC | 8 cut(s) | 196, 331, 655, 1086, 1484, 1548, 2032, 2166 |
| MbiI | CCGCTC | 1 cut(s) | 2623 |
| MboI | GATC | 8 cut(s) | 194, 329, 653, 1084, 1482, 1546, 2030, 2164 |
| MboII | GAAGA | 6 cut(s) | 131, 158, 1771, 1892, 1907, 2296 |
| MflI | RGATCY | 2 cut(s) | 194, 2164 |
| MhlI | GDGCHC | 7 cut(s) | 136, 946, 1004, 1152, 1926, 2064, 2244 |
| MlsI | TGGCCA | 3 cut(s) | 1506, 1707, 2130 |
| MluNI | TGGCCA | 3 cut(s) | 1506, 1707, 2130 |
| Mly113I | GGCGCC | 1 cut(s) | 1200 |
| MlyI | GAGTC | 3 cut(s) | 543, 745, 2594 |
| Mox20I | TGGCCA | 3 cut(s) | 1506, 1707, 2130 |
| Mph1103I | ATGCAT | 2 cut(s) | 2175, 2631 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1319 |
| MscI | TGGCCA | 3 cut(s) | 1506, 1707, 2130 |
| MseI | TTAA | 7 cut(s) | 414, 993, 1110, 1118, 1218, 1628, 2592 |
| MslI | CAYNNNNRTG | 5 cut(s) | 590, 1163, 1281, 1554, 1691 |
| Msp20I | TGGCCA | 3 cut(s) | 1506, 1707, 2130 |
| MspA1I | CMGCKG | 2 cut(s) | 72, 431 |
| MspI | CCGG | 3 cut(s) | 192, 1525, 2421 |
| MspR9I | CCNGG | 4 cut(s) | 1189, 1568, 1837, 2422 |
| Mva1269I | GAATGC | 1 cut(s) | 366 |
| MvaI | CCWGG | 3 cut(s) | 1189, 1568, 1837 |
| MvnI | CGCG | 3 cut(s) | 21, 1290, 1359 |
| NarI | GGCGCC | 1 cut(s) | 1200 |
| NciI | CCSGG | 1 cut(s) | 2422 |
| NcoI | CCATGG | 1 cut(s) | 1164 |
| NdeI | CATATG | 1 cut(s) | 2038 |
| NdeII | GATC | 8 cut(s) | 194, 329, 653, 1084, 1482, 1546, 2030, 2164 |
| NheI | GCTAGC | 1 cut(s) | 350 |
| NlaIV | GGNNCC | 5 cut(s) | 1001, 1002, 1201, 1770, 2122 |
| NmuCI | GTSAC | 9 cut(s) | 75, 1255, 1360, 1570, 1640, 1675, 2071, 2368, 2449 |
| NsbI | TGCGCA | 1 cut(s) | 2280 |
| NsiI | ATGCAT | 2 cut(s) | 2175, 2631 |
| NspI | RCATGY | 4 cut(s) | 1648, 2348, 2504, 2527 |
| OliI | CACNNNNGTG | 1 cut(s) | 590 |
| PaeI | GCATGC | 1 cut(s) | 2504 |
| PagI | TCATGA | 2 cut(s) | 763, 1584 |
| PauI | GCGCGC | 1 cut(s) | 19 |
| PciI | ACATGT | 2 cut(s) | 2344, 2523 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1924 |
| PctI | GAATGC | 1 cut(s) | 366 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1319 |
| PfeI | GAWTC | 6 cut(s) | 219, 254, 466, 1134, 1273, 2609 |
| Pfl23II | CGTACG | 1 cut(s) | 635 |
| PflFI | GACNNNGTC | 2 cut(s) | 1358, 2303 |
| PleI | GAGTC | 3 cut(s) | 542, 745, 2593 |
| PluTI | GGCGCC | 1 cut(s) | 1203 |
| PpsI | GAGTC | 3 cut(s) | 542, 745, 2593 |
| PpuMI | RGGWCCY | 1 cut(s) | 2120 |
| PscI | ACATGT | 2 cut(s) | 2344, 2523 |
| PsiI | TTATAA | 2 cut(s) | 462, 2336 |
| Psp124BI | GAGCTC | 1 cut(s) | 2064 |
| Psp1406I | AACGTT | 1 cut(s) | 357 |
| Psp5II | RGGWCCY | 1 cut(s) | 2120 |
| Psp6I | CCWGG | 3 cut(s) | 1187, 1566, 1835 |
| PspEI | GGTNACC | 2 cut(s) | 35, 1570 |
| PspGI | CCWGG | 3 cut(s) | 1187, 1566, 1835 |
| PspLI | CGTACG | 1 cut(s) | 635 |
| PspN4I | GGNNCC | 5 cut(s) | 1001, 1002, 1201, 1770, 2122 |
| PspOMI | GGGCCC | 1 cut(s) | 1000 |
| PspPI | GGNCC | 4 cut(s) | 869, 1000, 1001, 2120 |
| PspPPI | RGGWCCY | 1 cut(s) | 2120 |
| PstI | CTGCAG | 2 cut(s) | 1012, 1519 |
| PstNI | CAGNNNCTG | 1 cut(s) | 338 |
| PsuI | RGATCY | 2 cut(s) | 194, 2164 |
| PsyI | GACNNNGTC | 2 cut(s) | 1358, 2303 |
| PteI | GCGCGC | 1 cut(s) | 19 |
| PvuII | CAGCTG | 1 cut(s) | 431 |
| RsaI | GTAC | 5 cut(s) | 637, 837, 1372, 1770, 2362 |
| RsaNI | GTAC | 5 cut(s) | 636, 836, 1371, 1769, 2361 |
| RseI | CAYNNNNRTG | 5 cut(s) | 590, 1163, 1281, 1554, 1691 |
| SacI | GAGCTC | 1 cut(s) | 2064 |
| SaqAI | TTAA | 7 cut(s) | 414, 993, 1110, 1118, 1218, 1628, 2592 |
| Sau3AI | GATC | 8 cut(s) | 194, 329, 653, 1084, 1482, 1546, 2030, 2164 |
| Sau96I | GGNCC | 4 cut(s) | 869, 1000, 1001, 2120 |
| SchI | GAGTC | 3 cut(s) | 543, 745, 2594 |
| ScrFI | CCNGG | 4 cut(s) | 1189, 1568, 1837, 2422 |
| SduI | GDGCHC | 7 cut(s) | 136, 946, 1004, 1152, 1926, 2064, 2244 |
| SexAI | ACCWGGT | 1 cut(s) | 1566 |
| SfcI | CTRYAG | 3 cut(s) | 399, 1008, 1515 |
| SfoI | GGCGCC | 1 cut(s) | 1201 |
| SinI | GGWCC | 1 cut(s) | 2120 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 590, 1163, 1281, 1554, 1691 |
| SmlI | CTYRAG | 3 cut(s) | 43, 1721, 2243 |
| SmoI | CTYRAG | 3 cut(s) | 43, 1721, 2243 |
| SpeI | ACTAGT | 1 cut(s) | 587 |
| SphI | GCATGC | 1 cut(s) | 2504 |
| SsiI | CCGC | 4 cut(s) | 72, 1357, 2467, 2623 |
| SspDI | GGCGCC | 1 cut(s) | 1199 |
| SspMI | CTAG | 4 cut(s) | 54, 351, 588, 861 |
| SstI | GAGCTC | 1 cut(s) | 2064 |
| StyD4I | CCNGG | 4 cut(s) | 1187, 1566, 1835, 2420 |
| StyI | CCWWGG | 4 cut(s) | 1164, 1177, 1417, 1492 |
| TaiI | ACGT | 2 cut(s) | 360, 2139 |
| TaqI | TCGA | 2 cut(s) | 882, 2607 |
| TatI | WGTACW | 2 cut(s) | 835, 1370 |
| TfiI | GAWTC | 6 cut(s) | 219, 254, 466, 1134, 1273, 2609 |
| Tru1I | TTAA | 7 cut(s) | 414, 993, 1110, 1118, 1218, 1628, 2592 |
| Tru9I | TTAA | 7 cut(s) | 414, 993, 1110, 1118, 1218, 1628, 2592 |
| TscAI | CASTG | 8 cut(s) | 246, 517, 547, 748, 944, 1480, 1912, 2511 |
| TseFI | GTSAC | 9 cut(s) | 75, 1255, 1360, 1570, 1640, 1675, 2071, 2368, 2449 |
| Tsp45I | GTSAC | 9 cut(s) | 75, 1255, 1360, 1570, 1640, 1675, 2071, 2368, 2449 |
| TspDTI | ATGAA | 9 cut(s) | 93, 138, 917, 1248, 1265, 1328, 1766, 1791, 2219 |
| TspGWI | ACGGA | 1 cut(s) | 1771 |
| TspRI | CASTG | 8 cut(s) | 246, 517, 547, 748, 944, 1480, 1912, 2511 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1358, 2303 |
| VneI | GTGCAC | 2 cut(s) | 942, 1922 |
| VpaK11BI | GGWCC | 1 cut(s) | 2120 |
| XapI | RAATTY | 6 cut(s) | 10, 100, 1065, 1077, 2048, 2557 |
| XceI | RCATGY | 4 cut(s) | 1648, 2348, 2504, 2527 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1394 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1319 |
| XspI | CTAG | 4 cut(s) | 54, 351, 588, 861 |
| Zsp2I | ATGCAT | 2 cut(s) | 2175, 2631 |