FvH4_6g16683

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000045
Physical Location & Seq
Forward (+)
10586367 .. 10591909
5543 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16683.t1

Sequence Viewer

Length: 2502 bp
ATGGCGTGGTTGTCGGCACTTGAACCTGAGAGCTTGCCAGTGCTGGTGCTGGCGTTGGTTGGGCATGAGTGGTTAGTGCCTGAACTTGTTCAGTTAAAGGAGGCAATGACGCCTTGTCTCCTTAAGTGTTATATTTGTCCTGGGCATTGCCACGTCGTTATGAAGGAGCGATGTGACTCGCAAGGTTGCTGCTTGATCTTGAATAATATACTGGCGATCTGGCATCCCTTTGACTTCAAGATGAATCTTGTAAGAAATGACTTTGTGAAGGCATCAAAGGAATTTGTTGAGTTTGATGGATGCTCAAAGAACCAGCTCATGGTCTCACCATCGAGTGTTTCACTGAATATGAGTGACATCATCATATTCCTTGCAGTTGGTTACTTTCTTGAAGCTTTCTTGATGGGCAAACAGGTTCGCCAGAACTATGTCCAGCTTTGCTTGAACATCATCGATTACCGTTTCCAGTTTGGTATCGACTTACTCGATCTCTATGCCAGAATCAGGGCGCGTCTTGATGCCGATTATGTACATCTGGCGCTTATGCCTGGCTCAGGTGCTGCTGAATATGATTGTTTGCGCATATGCATCTACATAGAGGATTGTCAAGGTTTACTTTCTAGACTTCTAGAGAGCAAGATCGCTTCGACCATGGATATGGACATACTCAGTTGGAACTGTAGAGGCATTTGCGGGGACTCTACTGTTAGGCCTGGCTTTGTATCGGGCGGCTTAGCAGCATTTTGGAACGACGACGTGAAGGTGCTCATTGGTACGTCATCGTTGCACCATATTGATATGGAAATTGATGGAGGGCCTGGAGACTTCAATGAGATTCTCAATAACGGCGAGAAAATGGATGGACCAATGCGACCCGAACGTCAGATGAGAGGTTTTAGGGAAGCTCTTGGCTATGGTGATCTACTGGATCTAGGGTTTATGGGACCTACTACTACATGGTGGAATTCGGAAACAAAGTTACGCTTGGATAGAGCGGTGTGCACACTGTCTTGGTACGATATTTTTGCACATGCTAGGGTCCAACACCTTCCTCCAAGCGACTCAGACCATTTGCCGATCTTGCTGCATGCTAGCTCTGTCCCGATTCCTAAGCGTCCTAGGCTTCATAGGTTCAAGCTTGAAGCACACTGGTTGCAACATGGGGAATGTGATGGTGTTGTGAAGGAGGCTTGGATGACAGATGTAATGGGTTCACCCATGTATCAGATTAGAGGAACTCATGGATGTTGGAATTTCAGGGGATGTAATCGAGGAGAAAAAACGTCTTTCTTCTCTCTTGCAATCTTTGTTATCCCAAGAGGAAACTTTCTGGAGATAGTGAGCAAAGAGGATGATGAGGGGTTTGAGAAGATTGTTTCCTCGTATTTCAGTCGTATGTTTACGGCAGAGGATGTGGACATAGAGACCATGAATTCTACAGTGGCTGCGATTGAACCTTGTGTTACTAGGGAGATGAATGAGCAACTGTGTTCTTCTTATTCACTGGATGAAATTCGGTCTGCTCTGTTCCAAATGTACCAAACTAAGTCCCCAGGGCCTGATGGTATGCCTCCCTTGTTCTTCCAACACTATTGGGATACGATTGGTGAGGATGTCACCGTTGCGGTTCAAAACTTCCTACAATCTGGTCAACTTTTGCGTGAGATTAATTTTACGCACATCTGTTTGATTCCAAAGGAGGAGATCTCTAGTTTGTTAGGCATAGAGGTAGTTACTTCCCATGAAAAATACTTGGGTCTTCCTACTTATGTAGGGAGGAAAAAAACAGCTACATTTCAGTTTATTGAGGAGAGGTTGGCGAAGAAGGTCTCTAGTTGGCAAGATAGAACTCTTAGTGGTGCAGGCAGAGATATATTGATTCGTGTGGTTGCCCAATCACTTCCAGCTTATGCAATGAGTGTGTTCAAGCTAACAAAGAATTTCTATGAAGATCTTGAGCAGCTATGTGCTAAGTTTTGCTTAGATGAATTCAATTCAGCTATGCTGGCCCAACAAGCTTGGCGTGTGATTCATAATCCGAACTCTTTGGTTGCTAGACTCTTCAAAGCTCGACCTGGTACTCAGGTAAATGTATTAACTGATGCTTGGATACCTGGAGTGCCGAATTTCAAACCGTCAGGGAATGTTGTTTTACCTGATCATGTTGAACACGTCAGTGATTTGTTACATGGTCCGGGTGTATGGAATGAGAGCTTAATACGTTCTGTTTTTAATCGTCATGAAGCAGCAGCAATCCTAGCTATCCCTTTAACTCCTCTTGGTATAGATGATCGAGTGGTATGGCGTTTTGAAAAGAACTGTCTATTCACAGTTAAAACGGCTTACAAATACACATGTTCTCAGTCACCTTCTTGCCAGCCTTTTACTCATAATGCGAGTATGGCTTTCTGGAAGAAATTATGGAAGGTTGCTATTCCAAATGGTGCTAAGGTTCATTATGACAAGTTTTCCATGATATTCTACCTTCATTGGAACGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

834

Amino Acids

94.47

Weight (kDa)

5.92

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000045)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20031 FvH4_1g20032 FvH4_1g28811 FvH4_2g01463 FvH4_2g09182 FvH4_2g28261 FvH4_3g29411 FvH4_3g37471 FvH4_4g14101 FvH4_4g16371 FvH4_4g18821 FvH4_5g18832 FvH4_5g30171 FvH4_6g12302 FvH4_6g16683 FvH4_6g16753 FvH4_6g17021 FvH4_6g18902 FvH4_6g19251 FvH4_6g23332 FvH4_6g28111 FvH4_6g33201 FvH4_6g40361 FvH4_7g09171
prunus_persica Prupe.1G074300_v2.0.a1 Prupe.3G105600_v2.0.a1
pyrus_communis pycom05g10560 pycom07g05620 pycom12424g00110
rosa_chinensis RchiOBHm_Chr1g0334141 RchiOBHm_Chr5g0016671 RchiOBHm_Chr7g0208511 RchiOBHm_Chr7g0231041
rosa_laevigata RLG00000015243
rosa_multiflora Rmu_co7986832.1_g000001 Rmu_co8043772.1_g000001 Rmu_co8043774.1_g000001 Rmu_co8055874.1_g000001 Rmu_co8106278.1_g000001 Rmu_co8122148.1_g000001 Rmu_co8133260.1_g000001 Rmu_co8134318.1_g000001 Rmu_co8183860.1_g000001 Rmu_co8184294.1_g000001 Rmu_co8189556.1_g000001 Rmu_co8236577.1_g000001 Rmu_co8239421.1_g000001 Rmu_co8250871.1_g000001 Rmu_co8300345.1_g000001 Rmu_co8310915.1_g000001 Rmu_co8333321.1_g000001 Rmu_co8334427.1_g000001 Rmu_co8360619.1_g000001 Rmu_co8360619.1_g000002 Rmu_co8366931.1_g000001 Rmu_co8375289.1_g000001 Rmu_co8406881.1_g000001 Rmu_co8444187.1_g000001 Rmu_co8464563.1_g000001 Rmu_co8505097.1_g000001 Rmu_sc0000031.1_g000042 Rmu_sc0000031.1_g000043 Rmu_sc0000053.1_g000008 Rmu_sc0000104.1_g000026 Rmu_sc0000115.1_g000003 Rmu_sc0000148.1_g000077 Rmu_sc0000257.1_g000001 Rmu_sc0000311.1_g000016 Rmu_sc0000347.1_g000035 Rmu_sc0000365.1_g000048 Rmu_sc0000389.1_g000027 Rmu_sc0000399.1_g000009 Rmu_sc0000399.1_g000015 Rmu_sc0000408.1_g000016 Rmu_sc0000452.1_g000007 Rmu_sc0000458.1_g000015 Rmu_sc0000470.1_g000010 Rmu_sc0000498.1_g000067 Rmu_sc0000499.1_g000016 Rmu_sc0000536.1_g000029 Rmu_sc0000539.1_g000015 Rmu_sc0000544.1_g000005 Rmu_sc0000571.1_g000013 Rmu_sc0000573.1_g000013 Rmu_sc0000573.1_g000014 Rmu_sc0000600.1_g000043 Rmu_sc0000631.1_g000014 Rmu_sc0000657.1_g000014 Rmu_sc0000711.1_g000005 Rmu_sc0000711.1_g000059 Rmu_sc0000717.1_g000024 Rmu_sc0000717.1_g000025 Rmu_sc0000737.1_g000001 Rmu_sc0000744.1_g000081 Rmu_sc0000757.1_g000011 Rmu_sc0000784.1_g000026 Rmu_sc0000800.1_g000010 Rmu_sc0000816.1_g000017 Rmu_sc0000816.1_g000022 Rmu_sc0000870.1_g000047 Rmu_sc0000898.1_g000107 Rmu_sc0000929.1_g000011 Rmu_sc0001009.1_g000034 Rmu_sc0001059.1_g000021 Rmu_sc0001062.1_g000003 Rmu_sc0001124.1_g000027 Rmu_sc0001169.1_g000015 Rmu_sc0001169.1_g000016 Rmu_sc0001176.1_g000011 Rmu_sc0001176.1_g000012 Rmu_sc0001200.1_g000058 Rmu_sc0001200.1_g000059 Rmu_sc0001211.1_g000132 Rmu_sc0001250.1_g000019 Rmu_sc0001288.1_g000007 Rmu_sc0001416.1_g000012 Rmu_sc0001455.1_g000033 Rmu_sc0001461.1_g000077 Rmu_sc0001514.1_g000008 Rmu_sc0001531.1_g000015 Rmu_sc0001531.1_g000016 Rmu_sc0001548.1_g000037 Rmu_sc0001576.1_g000031 Rmu_sc0001615.1_g000011 Rmu_sc0001648.1_g000052 Rmu_sc0001648.1_g000053 Rmu_sc0001694.1_g000025 Rmu_sc0001696.1_g000022 Rmu_sc0001716.1_g000025 Rmu_sc0001799.1_g000003 Rmu_sc0001801.1_g000010 Rmu_sc0001801.1_g000011 Rmu_sc0001814.1_g000007 Rmu_sc0001863.1_g000030 Rmu_sc0001891.1_g000056 Rmu_sc0001891.1_g000057 Rmu_sc0001891.1_g000058 Rmu_sc0001940.1_g000032 Rmu_sc0001966.1_g000020 Rmu_sc0001982.1_g000009 Rmu_sc0001998.1_g000020 Rmu_sc0001998.1_g000021 Rmu_sc0002000.1_g000008 Rmu_sc0002023.1_g000013 Rmu_sc0002038.1_g000015 Rmu_sc0002038.1_g000016 Rmu_sc0002043.1_g000008 Rmu_sc0002063.1_g000010 Rmu_sc0002094.1_g000035 Rmu_sc0002099.1_g000007 Rmu_sc0002300.1_g000012 Rmu_sc0002316.1_g000063 Rmu_sc0002485.1_g000006 Rmu_sc0002520.1_g000010 Rmu_sc0002539.1_g000041 Rmu_sc0002665.1_g000012 Rmu_sc0002858.1_g000005 Rmu_sc0002882.1_g000038 Rmu_sc0002882.1_g000039 Rmu_sc0002890.1_g000016 Rmu_sc0002931.1_g000024 Rmu_sc0002942.1_g000022 Rmu_sc0003002.1_g000051 Rmu_sc0003012.1_g000030 Rmu_sc0003147.1_g000014 Rmu_sc0003156.1_g000006 Rmu_sc0003162.1_g000006 Rmu_sc0003261.1_g000027 Rmu_sc0003399.1_g000008 Rmu_sc0003500.1_g000004 Rmu_sc0003514.1_g000006 Rmu_sc0003764.1_g000013 Rmu_sc0003764.1_g000014 Rmu_sc0003764.1_g000015 Rmu_sc0003776.1_g000039 Rmu_sc0003829.1_g000001 Rmu_sc0003834.1_g000016 Rmu_sc0003834.1_g000017 Rmu_sc0003834.1_g000019 Rmu_sc0003834.1_g000020 Rmu_sc0003929.1_g000011 Rmu_sc0004003.1_g000002 Rmu_sc0004005.1_g000002 Rmu_sc0004240.1_g000001 Rmu_sc0004240.1_g000002 Rmu_sc0004340.1_g000023 Rmu_sc0004373.1_g000008 Rmu_sc0004373.1_g000009 Rmu_sc0004413.1_g000030 Rmu_sc0004467.1_g000011 Rmu_sc0004473.1_g000010 Rmu_sc0004577.1_g000023 Rmu_sc0004596.1_g000040 Rmu_sc0004711.1_g000024 Rmu_sc0004714.1_g000005 Rmu_sc0004720.1_g000012 Rmu_sc0004730.1_g000002 Rmu_sc0004733.1_g000004 Rmu_sc0004763.1_g000001 Rmu_sc0004768.1_g000010 Rmu_sc0004889.1_g000007 Rmu_sc0004889.1_g000008 Rmu_sc0004904.1_g000005 Rmu_sc0004961.1_g000003 Rmu_sc0004961.1_g000009 Rmu_sc0004990.1_g000007 Rmu_sc0005104.1_g000004 Rmu_sc0005122.1_g000016 Rmu_sc0005122.1_g000017 Rmu_sc0005229.1_g000013 Rmu_sc0005308.1_g000009 Rmu_sc0005363.1_g000010 Rmu_sc0005363.1_g000011 Rmu_sc0005382.1_g000001 Rmu_sc0005389.1_g000023 Rmu_sc0005514.1_g000008 Rmu_sc0005593.1_g000014 Rmu_sc0005705.1_g000010 Rmu_sc0005722.1_g000010 Rmu_sc0005745.1_g000027 Rmu_sc0005745.1_g000028 Rmu_sc0005802.1_g000023 Rmu_sc0005899.1_g000002 Rmu_sc0005952.1_g000001 Rmu_sc0005978.1_g000007 Rmu_sc0006158.1_g000001 Rmu_sc0006233.1_g000035 Rmu_sc0006343.1_g000009 Rmu_sc0006367.1_g000005 Rmu_sc0006444.1_g000007 Rmu_sc0006445.1_g000017 Rmu_sc0006493.1_g000015 Rmu_sc0006552.1_g000002 Rmu_sc0006695.1_g000054 Rmu_sc0006720.1_g000006 Rmu_sc0006722.1_g000015 Rmu_sc0007029.1_g000016 Rmu_sc0007080.1_g000001 Rmu_sc0007328.1_g000007 Rmu_sc0007341.1_g000003 Rmu_sc0007366.1_g000006 Rmu_sc0007421.1_g000003 Rmu_sc0007652.1_g000013 Rmu_sc0007716.1_g000002 Rmu_sc0007790.1_g000016 Rmu_sc0007802.1_g000002 Rmu_sc0008049.1_g000037 Rmu_sc0008087.1_g000009 Rmu_sc0008509.1_g000006 Rmu_sc0008676.1_g000002 Rmu_sc0008800.1_g000012 Rmu_sc0009053.1_g000003 Rmu_sc0009053.1_g000004 Rmu_sc0009241.1_g000002 Rmu_sc0009538.1_g000016 Rmu_sc0009568.1_g000001 Rmu_sc0009579.1_g000014 Rmu_sc0009742.1_g000001 Rmu_sc0009895.1_g000025 Rmu_sc0010202.1_g000006 Rmu_sc0010334.1_g000001 Rmu_sc0010483.1_g000022 Rmu_sc0010901.1_g000001 Rmu_sc0010937.1_g000008 Rmu_sc0011079.1_g000001 Rmu_sc0011173.1_g000012 Rmu_sc0011609.1_g000001 Rmu_sc0011698.1_g000013 Rmu_sc0011778.1_g000018 Rmu_sc0012115.1_g000006 Rmu_sc0012403.1_g000018 Rmu_sc0012426.1_g000003 Rmu_sc0012426.1_g000004 Rmu_sc0012705.1_g000001 Rmu_sc0012897.1_g000003 Rmu_sc0013014.1_g000009 Rmu_sc0013188.1_g000003 Rmu_sc0013612.1_g000007 Rmu_sc0013612.1_g000008 Rmu_sc0014076.1_g000002 Rmu_sc0014162.1_g000018 Rmu_sc0014206.1_g000008 Rmu_sc0014426.1_g000003 Rmu_sc0015447.1_g000006 Rmu_sc0016197.1_g000003 Rmu_sc0016546.1_g000001 Rmu_sc0016546.1_g000002 Rmu_sc0017848.1_g000001 Rmu_sc0017848.1_g000002 Rmu_sc0018300.1_g000001 Rmu_sc0018325.1_g000008 Rmu_sc0019396.1_g000002 Rmu_sc0019815.1_g000003 Rmu_sc0022463.1_g000004 Rmu_sc0023070.1_g000009 Rmu_sc0023965.1_g000004 Rmu_sc0024072.1_g000004 Rmu_sc0024195.1_g000017 Rmu_sc0024446.1_g000004 Rmu_sc0026134.1_g000001 Rmu_sc0026279.1_g000001 Rmu_sc0026736.1_g000001 Rmu_sc0027357.1_g000001 Rmu_sc0027357.1_g000002 Rmu_sc0027596.1_g000001 Rmu_sc0027596.1_g000002 Rmu_sc0027778.1_g000005 Rmu_sc0027873.1_g000001 Rmu_sc0028295.1_g000001 Rmu_sc0028706.1_g000002 Rmu_sc0034015.1_g000001 Rmu_sc0034598.1_g000002 Rmu_sc0035534.1_g000001 Rmu_sc0036127.1_g000001 Rmu_sc0036172.1_g000001 Rmu_sc0036279.1_g000002 Rmu_sc0036593.1_g000001 Rmu_sc0036891.1_g000001 Rmu_sc0041752.1_g000001 Rmu_sc0041761.1_g000001 Rmu_sc0042299.1_g000001 Rmu_sc0042653.1_g000003 Rmu_ssc0000011.1_g000004 Rmu_ssc0000035.1_g000004 Rmu_ssc0000064.1_g000029 Rmu_ssc0000201.1_g000005 Rmu_ssc0000201.1_g000010 Rmu_ssc0000201.1_g000011 Rmu_ssc0000342.1_g000008 Rmu_ssc0000342.1_g000019 Rmu_ssc0000381.1_g000002 Rmu_ssc0000432.1_g000083
rosa_roxburghii Rroxscaffold_1G00000890 Rroxscaffold_1G00045620 Rroxscaffold_1G00061860 Rroxscaffold_4G00303310 Rroxscaffold_4G00331420 Rroxscaffold_6G00406060
rosa_rugosa Rorug01G0072600 Rorug01G0113600 Rorug01G0113700 Rorug01G0167100 Rorug01G0199300 Rorug01G0274300 Rorug01G0312600 Rorug01G0383700 Rorug02G0026100.1 Rorug02G0173700 Rorug02G0211900 Rorug02G0212100 Rorug02G0341000 Rorug02G0634200 Rorug03G0098500 Rorug03G0106400 Rorug03G0144900 Rorug03G0145000 Rorug03G0155700 Rorug03G0155800 Rorug03G0170300 Rorug03G0184200 Rorug03G0213700 Rorug03G0229300 Rorug03G0232700.1 Rorug03G0232800 Rorug03G0324800 Rorug03G0334900 Rorug04G0049700 Rorug04G0067800 Rorug04G0197400 Rorug04G0235600 Rorug05G0038600 Rorug05G0081400 Rorug05G0089200 Rorug05G0157400 Rorug05G0157900 Rorug05G0157900 Rorug05G0186600 Rorug05G0214300 Rorug05G0267700 Rorug05G0309100 Rorug05G0370800 Rorug05G0419000 Rorug05G0515800 Rorug06G0040600 Rorug06G0069100 Rorug06G0142200 Rorug06G0142800 Rorug06G0144400 Rorug06G0276500 Rorug06G0444200 Rorug06G0495800 Rorug07G0017900 Rorug07G0030300 Rorug07G0031900 Rorug07G0032000 Rorug07G0051000 Rorug07G0053700 Rorug07G0116200 Rorug07G0164400 Rorug07G0236200 Rorug07G0308600 Rorug07G0313900
rosa_samantha Rh1CG051600 Rh1CG098200 Rh1CG101900 Rh1DG109900 Rh2BG354600 Rh2CG366900 Rh2DG048400 Rh2DG464500 Rh2DG484000 Rh3AG277100 Rh3AG286800 Rh3BG229500 Rh3DG264200 Rh4BG155600 Rh5AG127200 Rh5AG520800 Rh5BG116100 Rh6DG091200 Rh6DG091300 Rh7AG106700 Rh7AG343500 Rh7BG179600 Rh7BG337400 Rh7CG299700
rosa_wichuraiana Rw1G026260 Rw5G047800 Rw6G003270 Rw6G025380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 879
Acc16I TGCGCA 1 cut(s) 581
AccB7I CCANNNNNTGG 1 cut(s) 319
AccBSI CCGCTC 1 cut(s) 995
AccII CGCG 1 cut(s) 511
AciI CCGC 4 cut(s) 693, 729, 995, 1625
AclWI GGATC 1 cut(s) 936
AcsI RAATTY 8 cut(s) 281, 964, 1252, 1432, 1512, 1939, 1988, 2125
AcyI GRCGYC 1 cut(s) 110
AfaI GTAC 5 cut(s) 531, 775, 1016, 1538, 2080
AfiI CCNNNNNNNGG 3 cut(s) 319, 504, 554
AflII CTTAAG 1 cut(s) 122
AflIII ACRYGT 2 cut(s) 2170, 2354
AhdI GACNNNNNGTC 1 cut(s) 114
AjiI CACGTC 3 cut(s) 154, 757, 2173
AjnI CCWGG 7 cut(s) 139, 547, 712, 817, 1552, 2074, 2113
AleI CACNNNNGTG 1 cut(s) 2175
Alw21I GWGCWC 2 cut(s) 768, 1004
Alw26I GTCTC 5 cut(s) 122, 328, 816, 1418, 1834
Alw44I GTGCAC 1 cut(s) 1000
AlwI GGATC 1 cut(s) 936
AlwNI CAGNNNCTG 3 cut(s) 560, 1445, 1559
AoxI GGCC 4 cut(s) 710, 815, 1556, 2007
ApaLI GTGCAC 1 cut(s) 1000
ApeKI GCWGC 8 cut(s) 189, 560, 737, 1084, 1445, 1960, 2246, 2249
ApoI RAATTY 8 cut(s) 281, 964, 1252, 1432, 1512, 1939, 1988, 2125
AseI ATTAAT 1 cut(s) 1668
Asp700I GAANNNNTTC 1 cut(s) 87
AspA2I CCTAGG 1 cut(s) 1118
AspLEI GCGC 3 cut(s) 511, 541, 582
AspS9I GGNCC 7 cut(s) 815, 863, 944, 1039, 1556, 2008, 2192
AsuC2I CCSGG 1 cut(s) 2196
AsuHPI GGTGA 6 cut(s) 318, 929, 1206, 1609, 1619, 2358
AsuNHI GCTAGC 1 cut(s) 1091
AvaII GGWCC 4 cut(s) 863, 944, 1039, 2192
AvrII CCTAGG 1 cut(s) 1118
BaeGI GKGCMC 1 cut(s) 1004
BaeI ACNNNNGTAYC 4 cut(s) 1205, 1238, 2070, 2103
BbsI GAAGAC 1 cut(s) 1751
Bbv12I GWGCWC 2 cut(s) 768, 1004
BbvI GCAGC 8 cut(s) 176, 547, 749, 1071, 1432, 1972, 2258, 2261
BccI CCATC 7 cut(s) 290, 337, 397, 803, 854, 1166, 1556
BceAI ACGGC 3 cut(s) 862, 1419, 2355
BcgI CGANNNNNNTGC 6 cut(s) 476, 510, 1007, 1041, 1066, 1100
BciT130I CCWGG 7 cut(s) 141, 549, 714, 819, 1554, 2076, 2115
BciVI GTATCC 2 cut(s) 1591, 2103
BclI TGATCA 1 cut(s) 2158
BcnI CCSGG 1 cut(s) 2196
BcoDI GTCTC 5 cut(s) 122, 328, 816, 1418, 1834
BfmI CTRYAG 2 cut(s) 679, 1437
BfoI RGCGCY 1 cut(s) 542
BfrI CTTAAG 1 cut(s) 122
BfuI GTATCC 2 cut(s) 1591, 2103
BglII AGATCT 2 cut(s) 1704, 1951
BisI GCNGC 9 cut(s) 190, 561, 730, 738, 1085, 1446, 1961, 2247, 2250
BlnI CCTAGG 1 cut(s) 1118
BlpI GCTNAGC 1 cut(s) 733
BlsI GCNGC 9 cut(s) 191, 562, 731, 739, 1086, 1447, 1962, 2248, 2251
Bme1390I CCNGG 8 cut(s) 141, 549, 714, 819, 1554, 2076, 2115, 2196
Bme18I GGWCC 4 cut(s) 863, 944, 1039, 2192
BmeRI GACNNNNNGTC 1 cut(s) 114
BmgBI CACGTC 3 cut(s) 154, 757, 2173
BmgT120I GGNCC 7 cut(s) 815, 863, 944, 1039, 1556, 2008, 2192
BmiI GGNNCC 2 cut(s) 945, 1040
BmrFI CCNGG 8 cut(s) 141, 549, 714, 819, 1554, 2076, 2115, 2196
BmsI GCATC 6 cut(s) 232, 281, 290, 508, 597, 2092
BmtI GCTAGC 1 cut(s) 1095
BpiI GAAGAC 1 cut(s) 1751
BplI GAGNNNNNCTC 2 cut(s) 1691, 1723
BpmI CTGGAG 3 cut(s) 840, 1352, 2136
Bpu10I CCTNAGC 3 cut(s) 553, 1110, 2448
Bpu1102I GCTNAGC 1 cut(s) 733
BpuEI CTTGAG 1 cut(s) 1976
BpuMI CCSGG 1 cut(s) 2196
Bsa29I ATCGAT 1 cut(s) 453
BsaHI GRCGYC 1 cut(s) 110
BsaI GGTCTC 3 cut(s) 328, 1418, 1834
BsaJI CCNNGG 5 cut(s) 140, 651, 1118, 1552, 1553
Bsc4I CCNNNNNNNGG 3 cut(s) 319, 504, 554
Bse1I ACTGG 6 cut(s) 38, 216, 466, 930, 1154, 1509
Bse3DI GCAATG 3 cut(s) 111, 145, 1920
BseBI CCWGG 7 cut(s) 141, 549, 714, 819, 1554, 2076, 2115
BseCI ATCGAT 1 cut(s) 453
BseDI CCNNGG 5 cut(s) 140, 651, 1118, 1552, 1553
BseLI CCNNNNNNNGG 3 cut(s) 319, 504, 554
BseMI GCAATG 3 cut(s) 111, 145, 1920
BseMII CTCAG 6 cut(s) 18, 567, 682, 1077, 2096, 2375
BseNI ACTGG 6 cut(s) 38, 216, 466, 930, 1154, 1509
BseRI GAGGAG 4 cut(s) 1287, 1715, 1823, 2265
BseSI GKGCMC 1 cut(s) 1004
BseXI GCAGC 8 cut(s) 176, 547, 749, 1071, 1432, 1972, 2258, 2261
BsgI GTGCAG 1 cut(s) 1881
Bsh1236I CGCG 1 cut(s) 511
BshFI GGCC 4 cut(s) 712, 817, 1558, 2009
BshVI ATCGAT 1 cut(s) 453
BsiHKAI GWGCWC 2 cut(s) 768, 1004
BsiSI CCGG 1 cut(s) 2195
BslFI GGGAC 4 cut(s) 710, 957, 1085, 1534
BslI CCNNNNNNNGG 3 cut(s) 319, 504, 554
BsmAI GTCTC 5 cut(s) 122, 328, 816, 1418, 1834
BsmFI GGGAC 4 cut(s) 710, 957, 1085, 1534
BsnI GGCC 4 cut(s) 712, 817, 1558, 2009
Bso31I GGTCTC 3 cut(s) 328, 1418, 1834
Bsp1286I GDGCHC 2 cut(s) 768, 1004
Bsp1407I TGTACA 1 cut(s) 529
Bsp1720I GCTNAGC 1 cut(s) 733
Bsp19I CCATGG 1 cut(s) 651
BspACI CCGC 4 cut(s) 693, 729, 995, 1625
BspANI GGCC 4 cut(s) 712, 817, 1558, 2009
BspCNI CTCAG 6 cut(s) 19, 566, 681, 1076, 2095, 2374
BspDI ATCGAT 1 cut(s) 453
BspFNI CGCG 1 cut(s) 511
BspHI TCATGA 1 cut(s) 2239
BspLI GGNNCC 2 cut(s) 945, 1040
BspOI GCTAGC 1 cut(s) 1095
BspPI GGATC 1 cut(s) 936
BspTI CTTAAG 1 cut(s) 122
BspTNI GGTCTC 3 cut(s) 328, 1418, 1834
BsrBI CCGCTC 1 cut(s) 995
BsrDI GCAATG 3 cut(s) 111, 145, 1920
BsrGI TGTACA 1 cut(s) 529
BsrI ACTGG 6 cut(s) 38, 216, 466, 930, 1154, 1509
BssECI CCNNGG 5 cut(s) 140, 651, 1118, 1552, 1553
BssNI GRCGYC 1 cut(s) 110
BssT1I CCWWGG 2 cut(s) 651, 1118
Bst2UI CCWGG 7 cut(s) 141, 549, 714, 819, 1554, 2076, 2115
Bst6I CTCTTC 1 cut(s) 2066
BstACI GRCGYC 1 cut(s) 110
BstAFI CTTAAG 1 cut(s) 122
BstAUI TGTACA 1 cut(s) 529
BstC8I GCNNGC 7 cut(s) 35, 51, 1089, 1093, 1864, 2007, 2378
BstDSI CCRYGG 1 cut(s) 651
BstENI CCTNNNNNAGG 1 cut(s) 552
BstFNI CGCG 1 cut(s) 511
BstH2I RGCGCY 1 cut(s) 542
BstHHI GCGC 3 cut(s) 511, 541, 582
BstMAI GTCTC 5 cut(s) 122, 328, 816, 1418, 1834
BstMWI GCNNNNNNNGC 6 cut(s) 1081, 1120, 2006, 2015, 2258, 2402
BstNI CCWGG 7 cut(s) 141, 549, 714, 819, 1554, 2076, 2115
BstNSI RCATGY 3 cut(s) 1034, 1091, 2358
BstSCI CCNGG 8 cut(s) 139, 547, 712, 817, 1552, 2074, 2113, 2194
BstSFI CTRYAG 2 cut(s) 679, 1437
BstSLI GKGCMC 1 cut(s) 1004
BstUI CGCG 1 cut(s) 511
BstV1I GCAGC 8 cut(s) 176, 547, 749, 1071, 1432, 1972, 2258, 2261
BstV2I GAAGAC 1 cut(s) 1751
BstX2I RGATCY 3 cut(s) 928, 1704, 1951
BstXI CCANNNNNNTGG 1 cut(s) 658
BstYI RGATCY 3 cut(s) 928, 1704, 1951
Bsu15I ATCGAT 1 cut(s) 453
BsuI GTATCC 2 cut(s) 1591, 2103
BsuRI GGCC 4 cut(s) 712, 817, 1558, 2009
BsuTUI ATCGAT 1 cut(s) 453
BtgI CCRYGG 1 cut(s) 651
BtgZI GCGATG 1 cut(s) 184
BtrI CACGTC 3 cut(s) 154, 757, 2173
BtsIMutI CAGTG 7 cut(s) 45, 341, 1004, 1147, 1446, 1502, 2182
Cac8I GCNNGC 7 cut(s) 35, 51, 1089, 1093, 1864, 2007, 2378
CaiI CAGNNNCTG 3 cut(s) 560, 1445, 1559
CciI TCATGA 1 cut(s) 2239
CfoI GCGC 3 cut(s) 511, 541, 582
Cfr13I GGNCC 7 cut(s) 815, 863, 944, 1039, 1556, 2008, 2192
ClaI ATCGAT 1 cut(s) 453
CseI GACGC 3 cut(s) 118, 500, 1103
CsiI ACCWGGT 1 cut(s) 2074
Csp6I GTAC 5 cut(s) 530, 774, 1015, 1537, 2079
CviQI GTAC 5 cut(s) 530, 774, 1015, 1537, 2079
DrdI GACNNNNNNGTC 1 cut(s) 879
DriI GACNNNNNGTC 1 cut(s) 114
DseDI GACNNNNNNGTC 1 cut(s) 879
Eam1104I CTCTTC 1 cut(s) 2066
Eam1105I GACNNNNNGTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 2066
Eco130I CCWWGG 2 cut(s) 651, 1118
Eco147I AGGCCT 1 cut(s) 712
Eco31I GGTCTC 3 cut(s) 328, 1418, 1834
Eco47I GGWCC 4 cut(s) 863, 944, 1039, 2192
EcoNI CCTNNNNNAGG 1 cut(s) 552
EcoO109I RGGNCCY 3 cut(s) 815, 944, 1556
EcoRI GAATTC 3 cut(s) 964, 1432, 1988
EcoRII CCWGG 7 cut(s) 139, 547, 712, 817, 1552, 2074, 2113
EcoT14I CCWWGG 2 cut(s) 651, 1118
EcoT22I ATGCAT 1 cut(s) 590
ErhI CCWWGG 2 cut(s) 651, 1118
FalI AAGNNNNNCTT 6 cut(s) 600, 632, 968, 1000, 1964, 1996
FaqI GGGAC 4 cut(s) 710, 957, 1085, 1534
FauI CCCGC 1 cut(s) 686
FauNDI CATATG 1 cut(s) 584
FbaI TGATCA 1 cut(s) 2158
Fnu4HI GCNGC 9 cut(s) 190, 561, 730, 738, 1085, 1446, 1961, 2247, 2250
Fsp4HI GCNGC 9 cut(s) 190, 561, 730, 738, 1085, 1446, 1961, 2247, 2250
FspI TGCGCA 1 cut(s) 581
GlaI GCGC 3 cut(s) 510, 540, 581
GluI GCNGC 9 cut(s) 190, 561, 730, 738, 1085, 1446, 1961, 2247, 2250
GsuI CTGGAG 3 cut(s) 840, 1352, 2136
HaeII RGCGCY 1 cut(s) 542
HaeIII GGCC 4 cut(s) 712, 817, 1558, 2009
HapII CCGG 1 cut(s) 2195
HgaI GACGC 3 cut(s) 118, 500, 1103
HhaI GCGC 3 cut(s) 511, 541, 582
Hin1I GRCGYC 1 cut(s) 110
Hin6I GCGC 3 cut(s) 509, 539, 580
HinP1I GCGC 3 cut(s) 509, 539, 580
HincII GTYRAC 1 cut(s) 1652
HindII GTYRAC 1 cut(s) 1652
HindIII AAGCTT 3 cut(s) 393, 1136, 2016
HpaII CCGG 1 cut(s) 2195
HphI GGTGA 6 cut(s) 318, 929, 1206, 1609, 1619, 2358
Hpy166II GTNNAC 6 cut(s) 614, 1002, 1214, 1401, 1417, 1652
Hpy188I TCNGA 5 cut(s) 885, 970, 1066, 1227, 2040
Hpy8I GTNNAC 6 cut(s) 614, 1002, 1214, 1401, 1417, 1652
Hpy99I CGWCG 3 cut(s) 158, 755, 758
HpyAV CCTTC 9 cut(s) 157, 262, 754, 1058, 1177, 1819, 2379, 2419, 2495
HpyCH4IV ACGT 7 cut(s) 153, 756, 776, 880, 1283, 2172, 2221
HpyF10VI GCNNNNNNNGC 6 cut(s) 1081, 1120, 2006, 2015, 2258, 2402
HpySE526I ACGT 7 cut(s) 153, 756, 776, 880, 1283, 2172, 2221
Hsp92I GRCGYC 1 cut(s) 110
HspAI GCGC 3 cut(s) 509, 539, 580
Ksp22I TGATCA 1 cut(s) 2158
LmnI GCTCC 1 cut(s) 166
Lsp1109I GCAGC 8 cut(s) 176, 547, 749, 1071, 1432, 1972, 2258, 2261
LweI GCATC 6 cut(s) 232, 281, 290, 508, 597, 2092
MabI ACCWGGT 1 cut(s) 2074
MaeII ACGT 7 cut(s) 153, 756, 776, 880, 1283, 2172, 2221
MaeIII GTNAC 9 cut(s) 173, 353, 380, 978, 1462, 1615, 1732, 2184, 2364
MbiI CCGCTC 1 cut(s) 995
MboII GAAGA 9 cut(s) 1282, 1381, 1485, 1573, 1751, 1834, 1961, 2053, 2425
MflI RGATCY 3 cut(s) 928, 1704, 1951
MhlI GDGCHC 2 cut(s) 768, 1004
MlyI GAGTC 4 cut(s) 170, 692, 1055, 2052
MmeI TCCRAC 4 cut(s) 653, 1066, 1229, 1609
Mph1103I ATGCAT 1 cut(s) 590
MroXI GAANNNNTTC 1 cut(s) 87
MseI TTAA 8 cut(s) 95, 123, 1668, 2096, 2216, 2232, 2270, 2334
MslI CAYNNNNRTG 2 cut(s) 656, 2175
MspCI CTTAAG 1 cut(s) 122
MspI CCGG 1 cut(s) 2195
MspR9I CCNGG 8 cut(s) 141, 549, 714, 819, 1554, 2076, 2115, 2196
MvaI CCWGG 7 cut(s) 141, 549, 714, 819, 1554, 2076, 2115
MvnI CGCG 1 cut(s) 511
MwoI GCNNNNNNNGC 6 cut(s) 1081, 1120, 2006, 2015, 2258, 2402
NciI CCSGG 1 cut(s) 2196
NcoI CCATGG 1 cut(s) 651
NdeI CATATG 1 cut(s) 584
NheI GCTAGC 1 cut(s) 1091
NlaIV GGNNCC 2 cut(s) 945, 1040
NmuCI GTSAC 4 cut(s) 173, 353, 1615, 2364
NsbI TGCGCA 1 cut(s) 581
NsiI ATGCAT 1 cut(s) 590
NspI RCATGY 3 cut(s) 1034, 1091, 2358
OliI CACNNNNGTG 1 cut(s) 2175
PaeI GCATGC 1 cut(s) 1091
PagI TCATGA 1 cut(s) 2239
PasI CCCWGGG 1 cut(s) 1553
PceI AGGCCT 1 cut(s) 712
PciI ACATGT 1 cut(s) 2354
PcsI WCGNNNNNNNCGW 1 cut(s) 483
PdmI GAANNNNTTC 1 cut(s) 87
PfeI GAWTC 7 cut(s) 244, 501, 835, 1105, 1690, 1879, 2029
PflMI CCANNNNNTGG 1 cut(s) 319
PkrI GCNGC 9 cut(s) 191, 562, 731, 739, 1086, 1447, 1962, 2248, 2251
PleI GAGTC 4 cut(s) 170, 692, 1055, 2052
PpsI GAGTC 4 cut(s) 170, 692, 1055, 2052
PpuMI RGGWCCY 1 cut(s) 944
PscI ACATGT 1 cut(s) 2354
PshBI ATTAAT 1 cut(s) 1668
Psp5II RGGWCCY 1 cut(s) 944
Psp6I CCWGG 7 cut(s) 139, 547, 712, 817, 1552, 2074, 2113
PspGI CCWGG 7 cut(s) 139, 547, 712, 817, 1552, 2074, 2113
PspN4I GGNNCC 2 cut(s) 945, 1040
PspPI GGNCC 7 cut(s) 815, 863, 944, 1039, 1556, 2008, 2192
PspPPI RGGWCCY 1 cut(s) 944
PstNI CAGNNNCTG 3 cut(s) 560, 1445, 1559
PsuI RGATCY 3 cut(s) 928, 1704, 1951
RsaI GTAC 5 cut(s) 531, 775, 1016, 1538, 2080
RsaNI GTAC 5 cut(s) 530, 774, 1015, 1537, 2079
RseI CAYNNNNRTG 2 cut(s) 656, 2175
SaqAI TTAA 8 cut(s) 95, 123, 1668, 2096, 2216, 2232, 2270, 2334
SatI GCNGC 9 cut(s) 190, 561, 730, 738, 1085, 1446, 1961, 2247, 2250
Sau96I GGNCC 7 cut(s) 815, 863, 944, 1039, 1556, 2008, 2192
SchI GAGTC 4 cut(s) 170, 692, 1055, 2052
ScrFI CCNGG 8 cut(s) 141, 549, 714, 819, 1554, 2076, 2115, 2196
SduI GDGCHC 2 cut(s) 768, 1004
SexAI ACCWGGT 1 cut(s) 2074
SfaNI GCATC 6 cut(s) 232, 281, 290, 508, 597, 2092
SfcI CTRYAG 2 cut(s) 679, 1437
SinI GGWCC 4 cut(s) 863, 944, 1039, 2192
SmiMI CAYNNNNRTG 2 cut(s) 656, 2175
SmlI CTYRAG 2 cut(s) 122, 1955
SmoI CTYRAG 2 cut(s) 122, 1955
SphI GCATGC 1 cut(s) 1091
SseBI AGGCCT 1 cut(s) 712
SsiI CCGC 4 cut(s) 693, 729, 995, 1625
StuI AGGCCT 1 cut(s) 712
StyD4I CCNGG 8 cut(s) 139, 547, 712, 817, 1552, 2074, 2113, 2194
StyI CCWWGG 2 cut(s) 651, 1118
TaiI ACGT 7 cut(s) 156, 759, 779, 883, 1286, 2175, 2224
TaqI TCGA 8 cut(s) 332, 453, 477, 486, 647, 1270, 2071, 2293
TaqII GACCGA 1 cut(s) 1506
TatI WGTACW 1 cut(s) 529
TauI GCSGC 1 cut(s) 732
TfiI GAWTC 7 cut(s) 244, 501, 835, 1105, 1690, 1879, 2029
Tru1I TTAA 8 cut(s) 95, 123, 1668, 2096, 2216, 2232, 2270, 2334
Tru9I TTAA 8 cut(s) 95, 123, 1668, 2096, 2216, 2232, 2270, 2334
TscAI CASTG 7 cut(s) 45, 348, 1011, 1154, 1446, 1509, 2182
TseFI GTSAC 4 cut(s) 173, 353, 1615, 2364
TseI GCWGC 8 cut(s) 189, 560, 737, 1084, 1445, 1960, 2246, 2249
Tsp45I GTSAC 4 cut(s) 173, 353, 1615, 2364
TspRI CASTG 7 cut(s) 45, 348, 1011, 1154, 1446, 1509, 2182
Van91I CCANNNNNTGG 1 cut(s) 319
Vha464I CTTAAG 1 cut(s) 122
VneI GTGCAC 1 cut(s) 1000
VpaK11BI GGWCC 4 cut(s) 863, 944, 1039, 2192
VspI ATTAAT 1 cut(s) 1668
XagI CCTNNNNNAGG 1 cut(s) 552
XapI RAATTY 8 cut(s) 281, 964, 1252, 1432, 1512, 1939, 1988, 2125
XbaI TCTAGA 2 cut(s) 620, 628
XceI RCATGY 3 cut(s) 1034, 1091, 2358
XmaJI CCTAGG 1 cut(s) 1118
XmnI GAANNNNTTC 1 cut(s) 87
Zsp2I ATGCAT 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.