ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 398 |
| AclWI | GGATC | 2 cut(s) | 424, 437 |
| AcsI | RAATTY | 1 cut(s) | 79 |
| AcuI | CTGAAG | 2 cut(s) | 254, 497 |
| AfaI | GTAC | 2 cut(s) | 118, 599 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 126, 573 |
| AgsI | TTSAA | 3 cut(s) | 250, 482, 752 |
| AjiI | CACGTC | 1 cut(s) | 236 |
| AjnI | CCWGG | 3 cut(s) | 71, 437, 566 |
| AluBI | AGCT | 3 cut(s) | 20, 210, 617 |
| AluI | AGCT | 3 cut(s) | 20, 210, 617 |
| Alw26I | GTCTC | 2 cut(s) | 223, 541 |
| AlwI | GGATC | 2 cut(s) | 424, 437 |
| Ama87I | CYCGRG | 1 cut(s) | 150 |
| ApeKI | GCWGC | 4 cut(s) | 157, 328, 412, 614 |
| ApoI | RAATTY | 1 cut(s) | 79 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 510 |
| AsuHPI | GGTGA | 2 cut(s) | 290, 307 |
| AvaI | CYCGRG | 1 cut(s) | 150 |
| BamHI | GGATCC | 1 cut(s) | 429 |
| BbvCI | CCTCAGC | 1 cut(s) | 572 |
| BbvI | GCAGC | 4 cut(s) | 169, 340, 424, 626 |
| BccI | CCATC | 2 cut(s) | 418, 496 |
| BciT130I | CCWGG | 3 cut(s) | 73, 439, 568 |
| BcoDI | GTCTC | 2 cut(s) | 223, 541 |
| BfmI | CTRYAG | 2 cut(s) | 200, 604 |
| BglII | AGATCT | 3 cut(s) | 34, 448, 688 |
| BisI | GCNGC | 4 cut(s) | 158, 329, 413, 615 |
| BlsI | GCNGC | 4 cut(s) | 159, 330, 414, 616 |
| Bme1390I | CCNGG | 3 cut(s) | 73, 439, 568 |
| BmeT110I | CYCGRG | 1 cut(s) | 150 |
| BmgBI | CACGTC | 1 cut(s) | 236 |
| BmiI | GGNNCC | 1 cut(s) | 431 |
| BmrFI | CCNGG | 3 cut(s) | 73, 439, 568 |
| BmrI | ACTGGG | 1 cut(s) | 603 |
| BmsI | GCATC | 2 cut(s) | 169, 743 |
| BmuI | ACTGGG | 1 cut(s) | 603 |
| BpmI | CTGGAG | 1 cut(s) | 565 |
| Bpu10I | CCTNAGC | 1 cut(s) | 572 |
| BsaBI | GATNNNNATC | 2 cut(s) | 428, 687 |
| BsaI | GGTCTC | 1 cut(s) | 223 |
| BsaWI | WCCGGW | 1 cut(s) | 621 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 126, 573 |
| Bse1I | ACTGG | 1 cut(s) | 598 |
| Bse8I | GATNNNNATC | 2 cut(s) | 428, 687 |
| BseBI | CCWGG | 3 cut(s) | 73, 439, 568 |
| BseJI | GATNNNNATC | 2 cut(s) | 428, 687 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 126, 573 |
| BseMII | CTCAG | 1 cut(s) | 563 |
| BseNI | ACTGG | 1 cut(s) | 598 |
| BseRI | GAGGAG | 1 cut(s) | 692 |
| BseXI | GCAGC | 4 cut(s) | 169, 340, 424, 626 |
| BsgI | GTGCAG | 1 cut(s) | 176 |
| BsiHKCI | CYCGRG | 1 cut(s) | 150 |
| BsiSI | CCGG | 1 cut(s) | 622 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 126, 573 |
| BsmAI | GTCTC | 2 cut(s) | 223, 541 |
| BsmI | GAATGC | 1 cut(s) | 307 |
| Bso31I | GGTCTC | 1 cut(s) | 223 |
| BsoBI | CYCGRG | 1 cut(s) | 150 |
| Bsp143I | GATC | 5 cut(s) | 34, 429, 448, 688, 745 |
| BspCNI | CTCAG | 1 cut(s) | 564 |
| BspLI | GGNNCC | 1 cut(s) | 431 |
| BspPI | GGATC | 2 cut(s) | 424, 437 |
| BspTNI | GGTCTC | 1 cut(s) | 223 |
| BsrI | ACTGG | 1 cut(s) | 598 |
| BssMI | GATC | 5 cut(s) | 34, 429, 448, 688, 745 |
| Bst2UI | CCWGG | 3 cut(s) | 73, 439, 568 |
| BstC8I | GCNNGC | 1 cut(s) | 208 |
| BstDEI | CTNAG | 2 cut(s) | 95, 572 |
| BstEII | GGTNACC | 1 cut(s) | 703 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 571 |
| BstKTI | GATC | 5 cut(s) | 37, 432, 451, 691, 748 |
| BstMAI | GTCTC | 2 cut(s) | 223, 541 |
| BstMBI | GATC | 5 cut(s) | 34, 429, 448, 688, 745 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 517 |
| BstNI | CCWGG | 3 cut(s) | 73, 439, 568 |
| BstPI | GGTNACC | 1 cut(s) | 703 |
| BstSCI | CCNGG | 3 cut(s) | 71, 437, 566 |
| BstSFI | CTRYAG | 2 cut(s) | 200, 604 |
| BstV1I | GCAGC | 4 cut(s) | 169, 340, 424, 626 |
| BstX2I | RGATCY | 4 cut(s) | 34, 429, 448, 688 |
| BstYI | RGATCY | 4 cut(s) | 34, 429, 448, 688 |
| BtrI | CACGTC | 1 cut(s) | 236 |
| BtsI | GCAGTG | 1 cut(s) | 762 |
| BtsIMutI | CAGTG | 2 cut(s) | 591, 762 |
| Cac8I | GCNNGC | 1 cut(s) | 208 |
| CsiI | ACCWGGT | 1 cut(s) | 71 |
| Csp6I | GTAC | 2 cut(s) | 117, 598 |
| CviAII | CATG | 5 cut(s) | 123, 146, 185, 275, 306 |
| CviQI | GTAC | 2 cut(s) | 117, 598 |
| DdeI | CTNAG | 2 cut(s) | 95, 572 |
| DpnI | GATC | 5 cut(s) | 36, 431, 450, 690, 747 |
| DpnII | GATC | 5 cut(s) | 34, 429, 448, 688, 745 |
| DraI | TTTAAA | 1 cut(s) | 403 |
| Eco31I | GGTCTC | 1 cut(s) | 223 |
| Eco57I | CTGAAG | 2 cut(s) | 254, 497 |
| Eco88I | CYCGRG | 1 cut(s) | 150 |
| Eco91I | GGTNACC | 1 cut(s) | 703 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 571 |
| EcoO65I | GGTNACC | 1 cut(s) | 703 |
| EcoRI | GAATTC | 1 cut(s) | 79 |
| EcoRII | CCWGG | 3 cut(s) | 71, 437, 566 |
| EcoT22I | ATGCAT | 1 cut(s) | 307 |
| FaeI | CATG | 5 cut(s) | 126, 149, 188, 278, 309 |
| FatI | CATG | 5 cut(s) | 122, 145, 184, 274, 305 |
| Fnu4HI | GCNGC | 4 cut(s) | 158, 329, 413, 615 |
| Fsp4HI | GCNGC | 4 cut(s) | 158, 329, 413, 615 |
| GluI | GCNGC | 4 cut(s) | 158, 329, 413, 615 |
| GsuI | CTGGAG | 1 cut(s) | 565 |
| HapII | CCGG | 1 cut(s) | 622 |
| Hin1II | CATG | 5 cut(s) | 126, 149, 188, 278, 309 |
| HindIII | AAGCTT | 1 cut(s) | 18 |
| HinfI | GANTC | 2 cut(s) | 176, 536 |
| HpaII | CCGG | 1 cut(s) | 622 |
| HphI | GGTGA | 2 cut(s) | 290, 307 |
| Hpy166II | GTNNAC | 2 cut(s) | 117, 729 |
| Hpy188I | TCNGA | 4 cut(s) | 85, 171, 181, 501 |
| Hpy188III | TCNNGA | 4 cut(s) | 41, 544, 692, 749 |
| Hpy8I | GTNNAC | 2 cut(s) | 117, 729 |
| HpyAV | CCTTC | 1 cut(s) | 550 |
| HpyCH4IV | ACGT | 2 cut(s) | 235, 398 |
| HpyCH4V | TGCA | 3 cut(s) | 157, 305, 734 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 517 |
| HpyF3I | CTNAG | 2 cut(s) | 95, 572 |
| HpySE526I | ACGT | 2 cut(s) | 235, 398 |
| Hsp92II | CATG | 5 cut(s) | 126, 149, 188, 278, 309 |
| Kzo9I | GATC | 5 cut(s) | 34, 429, 448, 688, 745 |
| Lsp1109I | GCAGC | 4 cut(s) | 169, 340, 424, 626 |
| LweI | GCATC | 2 cut(s) | 169, 743 |
| MabI | ACCWGGT | 1 cut(s) | 71 |
| MaeII | ACGT | 2 cut(s) | 235, 398 |
| MaeIII | GTNAC | 3 cut(s) | 284, 343, 703 |
| MalI | GATC | 5 cut(s) | 36, 431, 450, 690, 747 |
| MboI | GATC | 5 cut(s) | 34, 429, 448, 688, 745 |
| MboII | GAAGA | 4 cut(s) | 29, 155, 310, 458 |
| MflI | RGATCY | 4 cut(s) | 34, 429, 448, 688 |
| MluCI | AATT | 3 cut(s) | 79, 465, 477 |
| MlyI | GAGTC | 1 cut(s) | 170 |
| MmeI | TCCRAC | 1 cut(s) | 81 |
| MnlI | CCTC | 9 cut(s) | 50, 177, 250, 526, 567, 571, 670, 673, 718 |
| Mph1103I | ATGCAT | 1 cut(s) | 307 |
| MroXI | GAANNNNTTC | 1 cut(s) | 510 |
| MseI | TTAA | 1 cut(s) | 402 |
| MslI | CAYNNNNRTG | 1 cut(s) | 722 |
| MspI | CCGG | 1 cut(s) | 622 |
| MspR9I | CCNGG | 3 cut(s) | 73, 439, 568 |
| Mva1269I | GAATGC | 1 cut(s) | 307 |
| MvaI | CCWGG | 3 cut(s) | 73, 439, 568 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 517 |
| NdeII | GATC | 5 cut(s) | 34, 429, 448, 688, 745 |
| NlaIII | CATG | 5 cut(s) | 126, 149, 188, 278, 309 |
| NlaIV | GGNNCC | 1 cut(s) | 431 |
| NmuCI | GTSAC | 1 cut(s) | 284 |
| NsiI | ATGCAT | 1 cut(s) | 307 |
| PctI | GAATGC | 1 cut(s) | 307 |
| PdmI | GAANNNNTTC | 1 cut(s) | 510 |
| PfeI | GAWTC | 1 cut(s) | 536 |
| PflFI | GACNNNGTC | 1 cut(s) | 234 |
| PkrI | GCNGC | 4 cut(s) | 159, 330, 414, 616 |
| PleI | GAGTC | 1 cut(s) | 170 |
| PpsI | GAGTC | 1 cut(s) | 170 |
| Psp1406I | AACGTT | 1 cut(s) | 398 |
| Psp6I | CCWGG | 3 cut(s) | 71, 437, 566 |
| PspEI | GGTNACC | 1 cut(s) | 703 |
| PspGI | CCWGG | 3 cut(s) | 71, 437, 566 |
| PspN4I | GGNNCC | 1 cut(s) | 431 |
| PsuI | RGATCY | 4 cut(s) | 34, 429, 448, 688 |
| PsyI | GACNNNGTC | 1 cut(s) | 234 |
| RsaI | GTAC | 2 cut(s) | 118, 599 |
| RsaNI | GTAC | 2 cut(s) | 117, 598 |
| RseI | CAYNNNNRTG | 1 cut(s) | 722 |
| SaqAI | TTAA | 1 cut(s) | 402 |
| SatI | GCNGC | 4 cut(s) | 158, 329, 413, 615 |
| Sau3AI | GATC | 5 cut(s) | 34, 429, 448, 688, 745 |
| SchI | GAGTC | 1 cut(s) | 170 |
| ScrFI | CCNGG | 3 cut(s) | 73, 439, 568 |
| SexAI | ACCWGGT | 1 cut(s) | 71 |
| SfaNI | GCATC | 2 cut(s) | 169, 743 |
| SfcI | CTRYAG | 2 cut(s) | 200, 604 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 722 |
| Sse9I | AATT | 3 cut(s) | 79, 465, 477 |
| SspI | AATATT | 1 cut(s) | 742 |
| StyD4I | CCNGG | 3 cut(s) | 71, 437, 566 |
| TaiI | ACGT | 2 cut(s) | 238, 401 |
| TaqI | TCGA | 2 cut(s) | 55, 132 |
| TasI | AATT | 3 cut(s) | 79, 465, 477 |
| TfiI | GAWTC | 1 cut(s) | 536 |
| Tru1I | TTAA | 1 cut(s) | 402 |
| Tru9I | TTAA | 1 cut(s) | 402 |
| TscAI | CASTG | 2 cut(s) | 598, 762 |
| TseFI | GTSAC | 1 cut(s) | 284 |
| TseI | GCWGC | 4 cut(s) | 157, 328, 412, 614 |
| Tsp45I | GTSAC | 1 cut(s) | 284 |
| TspDTI | ATGAA | 1 cut(s) | 672 |
| TspGWI | ACGGA | 1 cut(s) | 643 |
| TspRI | CASTG | 2 cut(s) | 598, 762 |
| Tth111I | GACNNNGTC | 1 cut(s) | 234 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 571 |
| XapI | RAATTY | 1 cut(s) | 79 |
| XmnI | GAANNNNTTC | 1 cut(s) | 510 |
| Zsp2I | ATGCAT | 1 cut(s) | 307 |