ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 365, 548 |
| Acc36I | ACCTGC | 1 cut(s) | 106 |
| AccI | GTMKAC | 1 cut(s) | 617 |
| AccII | CGCG | 1 cut(s) | 363 |
| AciI | CCGC | 2 cut(s) | 361, 682 |
| AcuI | CTGAAG | 1 cut(s) | 250 |
| AcyI | GRCGYC | 1 cut(s) | 184 |
| AfaI | GTAC | 3 cut(s) | 124, 444, 896 |
| AfeI | AGCGCT | 1 cut(s) | 630 |
| AgeI | ACCGGT | 1 cut(s) | 498 |
| AgsI | TTSAA | 7 cut(s) | 152, 505, 658, 812, 890, 944, 989 |
| AluBI | AGCT | 5 cut(s) | 349, 582, 844, 993, 1012 |
| AluI | AGCT | 5 cut(s) | 349, 582, 844, 993, 1012 |
| Alw21I | GWGCWC | 2 cut(s) | 853, 883 |
| Alw44I | GTGCAC | 1 cut(s) | 879 |
| Aor51HI | AGCGCT | 1 cut(s) | 630 |
| AoxI | GGCC | 1 cut(s) | 804 |
| ApaLI | GTGCAC | 1 cut(s) | 879 |
| ApeKI | GCWGC | 2 cut(s) | 346, 412 |
| AsiGI | ACCGGT | 1 cut(s) | 498 |
| AspA2I | CCTAGG | 1 cut(s) | 277 |
| AspLEI | GCGC | 3 cut(s) | 31, 365, 631 |
| AspS9I | GGNCC | 5 cut(s) | 233, 314, 358, 804, 914 |
| AsuC2I | CCSGG | 1 cut(s) | 912 |
| AsuHPI | GGTGA | 4 cut(s) | 118, 488, 852, 900 |
| AvaII | GGWCC | 4 cut(s) | 233, 314, 358, 914 |
| AvrII | CCTAGG | 1 cut(s) | 277 |
| BaeGI | GKGCMC | 1 cut(s) | 883 |
| BauI | CACGAG | 1 cut(s) | 530 |
| BbsI | GAAGAC | 2 cut(s) | 572, 729 |
| Bbv12I | GWGCWC | 2 cut(s) | 853, 883 |
| BbvCI | CCTCAGC | 1 cut(s) | 350 |
| BbvI | GCAGC | 2 cut(s) | 358, 424 |
| BccI | CCATC | 6 cut(s) | 30, 152, 174, 224, 501, 914 |
| BceAI | ACGGC | 2 cut(s) | 361, 457 |
| BciVI | GTATCC | 1 cut(s) | 949 |
| BclI | TGATCA | 1 cut(s) | 838 |
| BcnI | CCSGG | 1 cut(s) | 912 |
| BfaI | CTAG | 2 cut(s) | 32, 278 |
| BfoI | RGCGCY | 1 cut(s) | 632 |
| BfuAI | ACCTGC | 1 cut(s) | 106 |
| BfuI | GTATCC | 1 cut(s) | 949 |
| BisI | GCNGC | 2 cut(s) | 347, 413 |
| BlnI | CCTAGG | 1 cut(s) | 277 |
| BlsI | GCNGC | 2 cut(s) | 348, 414 |
| Bme1390I | CCNGG | 1 cut(s) | 912 |
| Bme18I | GGWCC | 4 cut(s) | 233, 314, 358, 914 |
| BmgT120I | GGNCC | 5 cut(s) | 233, 314, 358, 804, 914 |
| BmiI | GGNNCC | 2 cut(s) | 805, 915 |
| BmrFI | CCNGG | 1 cut(s) | 912 |
| BmsI | GCATC | 3 cut(s) | 424, 675, 915 |
| BpiI | GAAGAC | 2 cut(s) | 572, 729 |
| Bpu10I | CCTNAGC | 1 cut(s) | 350 |
| BpuEI | CTTGAG | 1 cut(s) | 810 |
| BpuMI | CCSGG | 1 cut(s) | 912 |
| Bsa29I | ATCGAT | 2 cut(s) | 228, 774 |
| BsaAI | YACGTR | 1 cut(s) | 442 |
| BsaHI | GRCGYC | 1 cut(s) | 184 |
| BsaJI | CCNNGG | 1 cut(s) | 277 |
| BsaWI | WCCGGW | 4 cut(s) | 498, 862, 916, 1017 |
| Bse118I | RCCGGY | 1 cut(s) | 498 |
| Bse1I | ACTGG | 1 cut(s) | 75 |
| Bse3DI | GCAATG | 1 cut(s) | 43 |
| BseCI | ATCGAT | 2 cut(s) | 228, 774 |
| BseDI | CCNNGG | 1 cut(s) | 277 |
| BseGI | GGATG | 5 cut(s) | 93, 690, 871, 925, 930 |
| BseMI | GCAATG | 1 cut(s) | 43 |
| BseMII | CTCAG | 4 cut(s) | 50, 146, 341, 447 |
| BseNI | ACTGG | 1 cut(s) | 75 |
| BseRI | GAGGAG | 2 cut(s) | 116, 548 |
| BseSI | GKGCMC | 1 cut(s) | 883 |
| BseXI | GCAGC | 2 cut(s) | 358, 424 |
| BsgI | GTGCAG | 2 cut(s) | 134, 355 |
| Bsh1236I | CGCG | 1 cut(s) | 363 |
| BshFI | GGCC | 1 cut(s) | 806 |
| BshTI | ACCGGT | 1 cut(s) | 498 |
| BshVI | ATCGAT | 2 cut(s) | 228, 774 |
| BsiHKAI | GWGCWC | 2 cut(s) | 853, 883 |
| BsiSI | CCGG | 5 cut(s) | 499, 863, 911, 917, 1018 |
| BslFI | GGGAC | 1 cut(s) | 927 |
| BsmFI | GGGAC | 1 cut(s) | 927 |
| BsnI | GGCC | 1 cut(s) | 806 |
| Bsp1286I | GDGCHC | 2 cut(s) | 853, 883 |
| Bsp143I | GATC | 3 cut(s) | 388, 771, 838 |
| BspACI | CCGC | 2 cut(s) | 361, 682 |
| BspANI | GGCC | 1 cut(s) | 806 |
| BspCNI | CTCAG | 4 cut(s) | 51, 145, 342, 446 |
| BspDI | ATCGAT | 2 cut(s) | 228, 774 |
| BspFNI | CGCG | 1 cut(s) | 363 |
| BspLI | GGNNCC | 2 cut(s) | 805, 915 |
| BspMI | ACCTGC | 1 cut(s) | 106 |
| BsrDI | GCAATG | 1 cut(s) | 43 |
| BsrFI | RCCGGY | 1 cut(s) | 498 |
| BsrI | ACTGG | 1 cut(s) | 75 |
| BssAI | RCCGGY | 1 cut(s) | 498 |
| BssECI | CCNNGG | 1 cut(s) | 277 |
| BssMI | GATC | 3 cut(s) | 388, 771, 838 |
| BssNI | GRCGYC | 1 cut(s) | 184 |
| BssSI | CACGAG | 1 cut(s) | 530 |
| BssT1I | CCWWGG | 1 cut(s) | 277 |
| Bst2BI | CACGAG | 1 cut(s) | 530 |
| BstACI | GRCGYC | 1 cut(s) | 184 |
| BstBAI | YACGTR | 1 cut(s) | 442 |
| BstC8I | GCNNGC | 2 cut(s) | 374, 463 |
| BstDEI | CTNAG | 6 cut(s) | 59, 132, 301, 350, 433, 726 |
| BstEII | GGTNACC | 1 cut(s) | 170 |
| BstF5I | GGATG | 5 cut(s) | 93, 690, 871, 925, 930 |
| BstFNI | CGCG | 1 cut(s) | 363 |
| BstH2I | RGCGCY | 1 cut(s) | 632 |
| BstHHI | GCGC | 3 cut(s) | 31, 365, 631 |
| BstKTI | GATC | 3 cut(s) | 391, 774, 841 |
| BstMBI | GATC | 3 cut(s) | 388, 771, 838 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 369 |
| BstPI | GGTNACC | 1 cut(s) | 170 |
| BstSCI | CCNGG | 1 cut(s) | 910 |
| BstSLI | GKGCMC | 1 cut(s) | 883 |
| BstUI | CGCG | 1 cut(s) | 363 |
| BstV1I | GCAGC | 2 cut(s) | 358, 424 |
| BstV2I | GAAGAC | 2 cut(s) | 572, 729 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 82 |
| Bsu15I | ATCGAT | 2 cut(s) | 228, 774 |
| BsuI | GTATCC | 1 cut(s) | 949 |
| BsuRI | GGCC | 1 cut(s) | 806 |
| BsuTUI | ATCGAT | 2 cut(s) | 228, 774 |
| BtsCI | GGATG | 5 cut(s) | 93, 690, 871, 925, 930 |
| BtsI | GCAGTG | 1 cut(s) | 837 |
| BtsIMutI | CAGTG | 2 cut(s) | 82, 837 |
| BveI | ACCTGC | 1 cut(s) | 106 |
| Cac8I | GCNNGC | 2 cut(s) | 374, 463 |
| CfoI | GCGC | 3 cut(s) | 31, 365, 631 |
| Cfr10I | RCCGGY | 1 cut(s) | 498 |
| Cfr13I | GGNCC | 5 cut(s) | 233, 314, 358, 804, 914 |
| ClaI | ATCGAT | 2 cut(s) | 228, 774 |
| CseI | GACGC | 1 cut(s) | 173 |
| Csp6I | GTAC | 3 cut(s) | 123, 443, 895 |
| CspAI | ACCGGT | 1 cut(s) | 498 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 308, 343 |
| CviAII | CATG | 2 cut(s) | 311, 458 |
| CviQI | GTAC | 3 cut(s) | 123, 443, 895 |
| DdeI | CTNAG | 6 cut(s) | 59, 132, 301, 350, 433, 726 |
| DpnI | GATC | 3 cut(s) | 390, 773, 840 |
| DpnII | GATC | 3 cut(s) | 388, 771, 838 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 365, 548 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 365, 548 |
| Eco130I | CCWWGG | 1 cut(s) | 277 |
| Eco47I | GGWCC | 4 cut(s) | 233, 314, 358, 914 |
| Eco47III | AGCGCT | 1 cut(s) | 630 |
| Eco57I | CTGAAG | 1 cut(s) | 250 |
| Eco91I | GGTNACC | 1 cut(s) | 170 |
| EcoO65I | GGTNACC | 1 cut(s) | 170 |
| EcoT14I | CCWWGG | 1 cut(s) | 277 |
| ErhI | CCWWGG | 1 cut(s) | 277 |
| FaeI | CATG | 2 cut(s) | 314, 461 |
| FaqI | GGGAC | 1 cut(s) | 927 |
| FatI | CATG | 2 cut(s) | 310, 457 |
| FbaI | TGATCA | 1 cut(s) | 838 |
| FblI | GTMKAC | 1 cut(s) | 617 |
| Fnu4HI | GCNGC | 2 cut(s) | 347, 413 |
| FokI | GGATG | 5 cut(s) | 100, 697, 878, 932, 937 |
| Fsp4HI | GCNGC | 2 cut(s) | 347, 413 |
| FspBI | CTAG | 2 cut(s) | 32, 278 |
| GlaI | GCGC | 3 cut(s) | 30, 364, 630 |
| GluI | GCNGC | 2 cut(s) | 347, 413 |
| HaeII | RGCGCY | 1 cut(s) | 632 |
| HaeIII | GGCC | 1 cut(s) | 806 |
| HapII | CCGG | 5 cut(s) | 499, 863, 911, 917, 1018 |
| HgaI | GACGC | 1 cut(s) | 173 |
| HhaI | GCGC | 3 cut(s) | 31, 365, 631 |
| Hin1I | GRCGYC | 1 cut(s) | 184 |
| Hin1II | CATG | 2 cut(s) | 314, 461 |
| Hin6I | GCGC | 3 cut(s) | 29, 363, 629 |
| HinP1I | GCGC | 3 cut(s) | 29, 363, 629 |
| HindIII | AAGCTT | 1 cut(s) | 991 |
| HinfI | GANTC | 3 cut(s) | 213, 431, 704 |
| HpaII | CCGG | 5 cut(s) | 499, 863, 911, 917, 1018 |
| HphI | GGTGA | 4 cut(s) | 118, 488, 852, 900 |
| Hpy166II | GTNNAC | 3 cut(s) | 618, 759, 881 |
| Hpy188I | TCNGA | 5 cut(s) | 60, 220, 340, 436, 769 |
| Hpy8I | GTNNAC | 3 cut(s) | 618, 759, 881 |
| Hpy99I | CGWCG | 2 cut(s) | 68, 382 |
| HpyAV | CCTTC | 2 cut(s) | 103, 664 |
| HpyCH4IV | ACGT | 4 cut(s) | 326, 441, 614, 797 |
| HpyCH4V | TGCA | 7 cut(s) | 115, 372, 412, 461, 529, 881, 1000 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 369 |
| HpyF3I | CTNAG | 6 cut(s) | 59, 132, 301, 350, 433, 726 |
| HpySE526I | ACGT | 4 cut(s) | 326, 441, 614, 797 |
| Hsp92I | GRCGYC | 1 cut(s) | 184 |
| Hsp92II | CATG | 2 cut(s) | 314, 461 |
| HspAI | GCGC | 3 cut(s) | 29, 363, 629 |
| Ksp22I | TGATCA | 1 cut(s) | 838 |
| Kzo9I | GATC | 3 cut(s) | 388, 771, 838 |
| LmnI | GCTCC | 3 cut(s) | 427, 587, 856 |
| Lsp1109I | GCAGC | 2 cut(s) | 358, 424 |
| LweI | GCATC | 3 cut(s) | 424, 675, 915 |
| MaeI | CTAG | 2 cut(s) | 32, 278 |
| MaeII | ACGT | 4 cut(s) | 326, 441, 614, 797 |
| MaeIII | GTNAC | 4 cut(s) | 170, 281, 428, 539 |
| MalI | GATC | 3 cut(s) | 390, 773, 840 |
| MboI | GATC | 3 cut(s) | 388, 771, 838 |
| MboII | GAAGA | 2 cut(s) | 577, 729 |
| MhlI | GDGCHC | 2 cut(s) | 853, 883 |
| MlyI | GAGTC | 1 cut(s) | 425 |
| MmeI | TCCRAC | 2 cut(s) | 276, 336 |
| MspA1I | CMGCKG | 1 cut(s) | 349 |
| MspI | CCGG | 5 cut(s) | 499, 863, 911, 917, 1018 |
| MspR9I | CCNGG | 1 cut(s) | 912 |
| MvnI | CGCG | 1 cut(s) | 363 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 369 |
| NciI | CCSGG | 1 cut(s) | 912 |
| NdeII | GATC | 3 cut(s) | 388, 771, 838 |
| NlaIII | CATG | 2 cut(s) | 314, 461 |
| NlaIV | GGNNCC | 2 cut(s) | 805, 915 |
| NmuCI | GTSAC | 2 cut(s) | 428, 539 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 549 |
| PfeI | GAWTC | 2 cut(s) | 213, 704 |
| PinAI | ACCGGT | 1 cut(s) | 498 |
| PkrI | GCNGC | 2 cut(s) | 348, 414 |
| PleI | GAGTC | 1 cut(s) | 425 |
| PpsI | GAGTC | 1 cut(s) | 425 |
| Ppu21I | YACGTR | 1 cut(s) | 442 |
| PspEI | GGTNACC | 1 cut(s) | 170 |
| PspN4I | GGNNCC | 2 cut(s) | 805, 915 |
| PspPI | GGNCC | 5 cut(s) | 233, 314, 358, 804, 914 |
| PvuII | CAGCTG | 1 cut(s) | 349 |
| RsaI | GTAC | 3 cut(s) | 124, 444, 896 |
| RsaNI | GTAC | 3 cut(s) | 123, 443, 895 |
| SatI | GCNGC | 2 cut(s) | 347, 413 |
| Sau3AI | GATC | 3 cut(s) | 388, 771, 838 |
| Sau96I | GGNCC | 5 cut(s) | 233, 314, 358, 804, 914 |
| SchI | GAGTC | 1 cut(s) | 425 |
| ScrFI | CCNGG | 1 cut(s) | 912 |
| SduI | GDGCHC | 2 cut(s) | 853, 883 |
| SfaNI | GCATC | 3 cut(s) | 424, 675, 915 |
| SinI | GGWCC | 4 cut(s) | 233, 314, 358, 914 |
| SmlI | CTYRAG | 1 cut(s) | 825 |
| SmoI | CTYRAG | 1 cut(s) | 825 |
| SsiI | CCGC | 2 cut(s) | 361, 682 |
| SspMI | CTAG | 2 cut(s) | 32, 278 |
| StyD4I | CCNGG | 1 cut(s) | 910 |
| StyI | CCWWGG | 1 cut(s) | 277 |
| TaiI | ACGT | 4 cut(s) | 329, 444, 617, 800 |
| TaqI | TCGA | 4 cut(s) | 144, 228, 552, 774 |
| TfiI | GAWTC | 2 cut(s) | 213, 704 |
| TscAI | CASTG | 2 cut(s) | 82, 837 |
| TseFI | GTSAC | 2 cut(s) | 428, 539 |
| TseI | GCWGC | 2 cut(s) | 346, 412 |
| Tsp45I | GTSAC | 2 cut(s) | 428, 539 |
| TspDTI | ATGAA | 2 cut(s) | 299, 446 |
| TspRI | CASTG | 2 cut(s) | 82, 837 |
| VneI | GTGCAC | 1 cut(s) | 879 |
| VpaK11BI | GGWCC | 4 cut(s) | 233, 314, 358, 914 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 324 |
| XmaJI | CCTAGG | 1 cut(s) | 277 |
| XmiI | GTMKAC | 1 cut(s) | 617 |
| XspI | CTAG | 2 cut(s) | 32, 278 |