Rmu_sc0000539.1_g000015

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000539.1
OG0000045
Physical Location & Seq
Reverse (-)
66282 .. 67382
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000539.1_g000015.1.cds

Sequence Viewer

Length: 876 bp
atgaatgatatagtgttgcaggtgcgcactttctcagcgcatcatattgacatagaagttagtattggtcctggtgaacctcgttggagactcacaggtttttatggttatgctcgtatcaatgaacgtgatttatcttggcaactaatcagagacttatgtgatcttgattcccttccttgggtcatcatcggggacttcaatgagatattgaacaatgggttccaggggactaaaatgacttggtggaattctgagactcagctcagacttgatagggcagttgcaactgcaagtttgggcgatgtttttggtccttctaaggtcaagaaccttgccctaagtgactcagatcatacaccgatcttacttcaggctagcagcgttccattgcttaaacgaccacacatacatagattcaaatttgaatctttttggctacagcatgaagagtgtgatcctttggtgctagaaaagtggcaaactgattttgaagggttaactgtcaaacttcatgaagagaagaaaactctaatggcttcattacaggatctattatcccaagaaaaagctttttggaagcaacgagtgaaggttacttggctacaagaaggagatagaaatagtggtttctttcacaggaaggtagctgatagaaagaagaaaaattctcttttgggtttgtttgatgctgaaggaaattggaaggaggatgatggtatggagagggtagttacctcttatttttctaaaatgttcacaacctcttctctggatagtaaggcagtggaatttactttggctactatccagccctgtgtcactgaggagatgaatcagagtctgtgtgagcagtatacaaaggaagaagtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

291

Amino Acids

33.68

Weight (kDa)

5.56

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000045)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20031 FvH4_1g20032 FvH4_1g28811 FvH4_2g01463 FvH4_2g09182 FvH4_2g28261 FvH4_3g29411 FvH4_3g37471 FvH4_4g14101 FvH4_4g16371 FvH4_4g18821 FvH4_5g18832 FvH4_5g30171 FvH4_6g12302 FvH4_6g16683 FvH4_6g16753 FvH4_6g17021 FvH4_6g18902 FvH4_6g19251 FvH4_6g23332 FvH4_6g28111 FvH4_6g33201 FvH4_6g40361 FvH4_7g09171
prunus_persica Prupe.1G074300_v2.0.a1 Prupe.3G105600_v2.0.a1
pyrus_communis pycom05g10560 pycom07g05620 pycom12424g00110
rosa_chinensis RchiOBHm_Chr1g0334141 RchiOBHm_Chr5g0016671 RchiOBHm_Chr7g0208511 RchiOBHm_Chr7g0231041
rosa_laevigata RLG00000015243
rosa_multiflora Rmu_co7986832.1_g000001 Rmu_co8043772.1_g000001 Rmu_co8043774.1_g000001 Rmu_co8055874.1_g000001 Rmu_co8106278.1_g000001 Rmu_co8122148.1_g000001 Rmu_co8133260.1_g000001 Rmu_co8134318.1_g000001 Rmu_co8183860.1_g000001 Rmu_co8184294.1_g000001 Rmu_co8189556.1_g000001 Rmu_co8236577.1_g000001 Rmu_co8239421.1_g000001 Rmu_co8250871.1_g000001 Rmu_co8300345.1_g000001 Rmu_co8310915.1_g000001 Rmu_co8333321.1_g000001 Rmu_co8334427.1_g000001 Rmu_co8360619.1_g000001 Rmu_co8360619.1_g000002 Rmu_co8366931.1_g000001 Rmu_co8375289.1_g000001 Rmu_co8406881.1_g000001 Rmu_co8444187.1_g000001 Rmu_co8464563.1_g000001 Rmu_co8505097.1_g000001 Rmu_sc0000031.1_g000042 Rmu_sc0000031.1_g000043 Rmu_sc0000053.1_g000008 Rmu_sc0000104.1_g000026 Rmu_sc0000115.1_g000003 Rmu_sc0000148.1_g000077 Rmu_sc0000257.1_g000001 Rmu_sc0000311.1_g000016 Rmu_sc0000347.1_g000035 Rmu_sc0000365.1_g000048 Rmu_sc0000389.1_g000027 Rmu_sc0000399.1_g000009 Rmu_sc0000399.1_g000015 Rmu_sc0000408.1_g000016 Rmu_sc0000452.1_g000007 Rmu_sc0000458.1_g000015 Rmu_sc0000470.1_g000010 Rmu_sc0000498.1_g000067 Rmu_sc0000499.1_g000016 Rmu_sc0000536.1_g000029 Rmu_sc0000539.1_g000015 Rmu_sc0000544.1_g000005 Rmu_sc0000571.1_g000013 Rmu_sc0000573.1_g000013 Rmu_sc0000573.1_g000014 Rmu_sc0000600.1_g000043 Rmu_sc0000631.1_g000014 Rmu_sc0000657.1_g000014 Rmu_sc0000711.1_g000005 Rmu_sc0000711.1_g000059 Rmu_sc0000717.1_g000024 Rmu_sc0000717.1_g000025 Rmu_sc0000737.1_g000001 Rmu_sc0000744.1_g000081 Rmu_sc0000757.1_g000011 Rmu_sc0000784.1_g000026 Rmu_sc0000800.1_g000010 Rmu_sc0000816.1_g000017 Rmu_sc0000816.1_g000022 Rmu_sc0000870.1_g000047 Rmu_sc0000898.1_g000107 Rmu_sc0000929.1_g000011 Rmu_sc0001009.1_g000034 Rmu_sc0001059.1_g000021 Rmu_sc0001062.1_g000003 Rmu_sc0001124.1_g000027 Rmu_sc0001169.1_g000015 Rmu_sc0001169.1_g000016 Rmu_sc0001176.1_g000011 Rmu_sc0001176.1_g000012 Rmu_sc0001200.1_g000058 Rmu_sc0001200.1_g000059 Rmu_sc0001211.1_g000132 Rmu_sc0001250.1_g000019 Rmu_sc0001288.1_g000007 Rmu_sc0001416.1_g000012 Rmu_sc0001455.1_g000033 Rmu_sc0001461.1_g000077 Rmu_sc0001514.1_g000008 Rmu_sc0001531.1_g000015 Rmu_sc0001531.1_g000016 Rmu_sc0001548.1_g000037 Rmu_sc0001576.1_g000031 Rmu_sc0001615.1_g000011 Rmu_sc0001648.1_g000052 Rmu_sc0001648.1_g000053 Rmu_sc0001694.1_g000025 Rmu_sc0001696.1_g000022 Rmu_sc0001716.1_g000025 Rmu_sc0001799.1_g000003 Rmu_sc0001801.1_g000010 Rmu_sc0001801.1_g000011 Rmu_sc0001814.1_g000007 Rmu_sc0001863.1_g000030 Rmu_sc0001891.1_g000056 Rmu_sc0001891.1_g000057 Rmu_sc0001891.1_g000058 Rmu_sc0001940.1_g000032 Rmu_sc0001966.1_g000020 Rmu_sc0001982.1_g000009 Rmu_sc0001998.1_g000020 Rmu_sc0001998.1_g000021 Rmu_sc0002000.1_g000008 Rmu_sc0002023.1_g000013 Rmu_sc0002038.1_g000015 Rmu_sc0002038.1_g000016 Rmu_sc0002043.1_g000008 Rmu_sc0002063.1_g000010 Rmu_sc0002094.1_g000035 Rmu_sc0002099.1_g000007 Rmu_sc0002300.1_g000012 Rmu_sc0002316.1_g000063 Rmu_sc0002485.1_g000006 Rmu_sc0002520.1_g000010 Rmu_sc0002539.1_g000041 Rmu_sc0002665.1_g000012 Rmu_sc0002858.1_g000005 Rmu_sc0002882.1_g000038 Rmu_sc0002882.1_g000039 Rmu_sc0002890.1_g000016 Rmu_sc0002931.1_g000024 Rmu_sc0002942.1_g000022 Rmu_sc0003002.1_g000051 Rmu_sc0003012.1_g000030 Rmu_sc0003147.1_g000014 Rmu_sc0003156.1_g000006 Rmu_sc0003162.1_g000006 Rmu_sc0003261.1_g000027 Rmu_sc0003399.1_g000008 Rmu_sc0003500.1_g000004 Rmu_sc0003514.1_g000006 Rmu_sc0003764.1_g000013 Rmu_sc0003764.1_g000014 Rmu_sc0003764.1_g000015 Rmu_sc0003776.1_g000039 Rmu_sc0003829.1_g000001 Rmu_sc0003834.1_g000016 Rmu_sc0003834.1_g000017 Rmu_sc0003834.1_g000019 Rmu_sc0003834.1_g000020 Rmu_sc0003929.1_g000011 Rmu_sc0004003.1_g000002 Rmu_sc0004005.1_g000002 Rmu_sc0004240.1_g000001 Rmu_sc0004240.1_g000002 Rmu_sc0004340.1_g000023 Rmu_sc0004373.1_g000008 Rmu_sc0004373.1_g000009 Rmu_sc0004413.1_g000030 Rmu_sc0004467.1_g000011 Rmu_sc0004473.1_g000010 Rmu_sc0004577.1_g000023 Rmu_sc0004596.1_g000040 Rmu_sc0004711.1_g000024 Rmu_sc0004714.1_g000005 Rmu_sc0004720.1_g000012 Rmu_sc0004730.1_g000002 Rmu_sc0004733.1_g000004 Rmu_sc0004763.1_g000001 Rmu_sc0004768.1_g000010 Rmu_sc0004889.1_g000007 Rmu_sc0004889.1_g000008 Rmu_sc0004904.1_g000005 Rmu_sc0004961.1_g000003 Rmu_sc0004961.1_g000009 Rmu_sc0004990.1_g000007 Rmu_sc0005104.1_g000004 Rmu_sc0005122.1_g000016 Rmu_sc0005122.1_g000017 Rmu_sc0005229.1_g000013 Rmu_sc0005308.1_g000009 Rmu_sc0005363.1_g000010 Rmu_sc0005363.1_g000011 Rmu_sc0005382.1_g000001 Rmu_sc0005389.1_g000023 Rmu_sc0005514.1_g000008 Rmu_sc0005593.1_g000014 Rmu_sc0005705.1_g000010 Rmu_sc0005722.1_g000010 Rmu_sc0005745.1_g000027 Rmu_sc0005745.1_g000028 Rmu_sc0005802.1_g000023 Rmu_sc0005899.1_g000002 Rmu_sc0005952.1_g000001 Rmu_sc0005978.1_g000007 Rmu_sc0006158.1_g000001 Rmu_sc0006233.1_g000035 Rmu_sc0006343.1_g000009 Rmu_sc0006367.1_g000005 Rmu_sc0006444.1_g000007 Rmu_sc0006445.1_g000017 Rmu_sc0006493.1_g000015 Rmu_sc0006552.1_g000002 Rmu_sc0006695.1_g000054 Rmu_sc0006720.1_g000006 Rmu_sc0006722.1_g000015 Rmu_sc0007029.1_g000016 Rmu_sc0007080.1_g000001 Rmu_sc0007328.1_g000007 Rmu_sc0007341.1_g000003 Rmu_sc0007366.1_g000006 Rmu_sc0007421.1_g000003 Rmu_sc0007652.1_g000013 Rmu_sc0007716.1_g000002 Rmu_sc0007790.1_g000016 Rmu_sc0007802.1_g000002 Rmu_sc0008049.1_g000037 Rmu_sc0008087.1_g000009 Rmu_sc0008509.1_g000006 Rmu_sc0008676.1_g000002 Rmu_sc0008800.1_g000012 Rmu_sc0009053.1_g000003 Rmu_sc0009053.1_g000004 Rmu_sc0009241.1_g000002 Rmu_sc0009538.1_g000016 Rmu_sc0009568.1_g000001 Rmu_sc0009579.1_g000014 Rmu_sc0009742.1_g000001 Rmu_sc0009895.1_g000025 Rmu_sc0010202.1_g000006 Rmu_sc0010334.1_g000001 Rmu_sc0010483.1_g000022 Rmu_sc0010901.1_g000001 Rmu_sc0010937.1_g000008 Rmu_sc0011079.1_g000001 Rmu_sc0011173.1_g000012 Rmu_sc0011609.1_g000001 Rmu_sc0011698.1_g000013 Rmu_sc0011778.1_g000018 Rmu_sc0012115.1_g000006 Rmu_sc0012403.1_g000018 Rmu_sc0012426.1_g000003 Rmu_sc0012426.1_g000004 Rmu_sc0012705.1_g000001 Rmu_sc0012897.1_g000003 Rmu_sc0013014.1_g000009 Rmu_sc0013188.1_g000003 Rmu_sc0013612.1_g000007 Rmu_sc0013612.1_g000008 Rmu_sc0014076.1_g000002 Rmu_sc0014162.1_g000018 Rmu_sc0014206.1_g000008 Rmu_sc0014426.1_g000003 Rmu_sc0015447.1_g000006 Rmu_sc0016197.1_g000003 Rmu_sc0016546.1_g000001 Rmu_sc0016546.1_g000002 Rmu_sc0017848.1_g000001 Rmu_sc0017848.1_g000002 Rmu_sc0018300.1_g000001 Rmu_sc0018325.1_g000008 Rmu_sc0019396.1_g000002 Rmu_sc0019815.1_g000003 Rmu_sc0022463.1_g000004 Rmu_sc0023070.1_g000009 Rmu_sc0023965.1_g000004 Rmu_sc0024072.1_g000004 Rmu_sc0024195.1_g000017 Rmu_sc0024446.1_g000004 Rmu_sc0026134.1_g000001 Rmu_sc0026279.1_g000001 Rmu_sc0026736.1_g000001 Rmu_sc0027357.1_g000001 Rmu_sc0027357.1_g000002 Rmu_sc0027596.1_g000001 Rmu_sc0027596.1_g000002 Rmu_sc0027778.1_g000005 Rmu_sc0027873.1_g000001 Rmu_sc0028295.1_g000001 Rmu_sc0028706.1_g000002 Rmu_sc0034015.1_g000001 Rmu_sc0034598.1_g000002 Rmu_sc0035534.1_g000001 Rmu_sc0036127.1_g000001 Rmu_sc0036172.1_g000001 Rmu_sc0036279.1_g000002 Rmu_sc0036593.1_g000001 Rmu_sc0036891.1_g000001 Rmu_sc0041752.1_g000001 Rmu_sc0041761.1_g000001 Rmu_sc0042299.1_g000001 Rmu_sc0042653.1_g000003 Rmu_ssc0000011.1_g000004 Rmu_ssc0000035.1_g000004 Rmu_ssc0000064.1_g000029 Rmu_ssc0000201.1_g000005 Rmu_ssc0000201.1_g000010 Rmu_ssc0000201.1_g000011 Rmu_ssc0000342.1_g000008 Rmu_ssc0000342.1_g000019 Rmu_ssc0000381.1_g000002 Rmu_ssc0000432.1_g000083
rosa_roxburghii Rroxscaffold_1G00000890 Rroxscaffold_1G00045620 Rroxscaffold_1G00061860 Rroxscaffold_4G00303310 Rroxscaffold_4G00331420 Rroxscaffold_6G00406060
rosa_rugosa Rorug01G0072600 Rorug01G0113600 Rorug01G0113700 Rorug01G0167100 Rorug01G0199300 Rorug01G0274300 Rorug01G0312600 Rorug01G0383700 Rorug02G0026100.1 Rorug02G0173700 Rorug02G0211900 Rorug02G0212100 Rorug02G0341000 Rorug02G0634200 Rorug03G0098500 Rorug03G0106400 Rorug03G0144900 Rorug03G0145000 Rorug03G0155700 Rorug03G0155800 Rorug03G0170300 Rorug03G0184200 Rorug03G0213700 Rorug03G0229300 Rorug03G0232700.1 Rorug03G0232800 Rorug03G0324800 Rorug03G0334900 Rorug04G0049700 Rorug04G0067800 Rorug04G0197400 Rorug04G0235600 Rorug05G0038600 Rorug05G0081400 Rorug05G0089200 Rorug05G0157400 Rorug05G0157900 Rorug05G0157900 Rorug05G0186600 Rorug05G0214300 Rorug05G0267700 Rorug05G0309100 Rorug05G0370800 Rorug05G0419000 Rorug05G0515800 Rorug06G0040600 Rorug06G0069100 Rorug06G0142200 Rorug06G0142800 Rorug06G0144400 Rorug06G0276500 Rorug06G0444200 Rorug06G0495800 Rorug07G0017900 Rorug07G0030300 Rorug07G0031900 Rorug07G0032000 Rorug07G0051000 Rorug07G0053700 Rorug07G0116200 Rorug07G0164400 Rorug07G0236200 Rorug07G0308600 Rorug07G0313900
rosa_samantha Rh1CG051600 Rh1CG098200 Rh1CG101900 Rh1DG109900 Rh2BG354600 Rh2CG366900 Rh2DG048400 Rh2DG464500 Rh2DG484000 Rh3AG277100 Rh3AG286800 Rh3BG229500 Rh3DG264200 Rh4BG155600 Rh5AG127200 Rh5AG520800 Rh5BG116100 Rh6DG091200 Rh6DG091300 Rh7AG106700 Rh7AG343500 Rh7BG179600 Rh7BG337400 Rh7CG299700
rosa_wichuraiana Rw1G026260 Rw5G047800 Rw6G003270 Rw6G025380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 10
Acc16I TGCGCA 1 cut(s) 26
Acc36I ACCTGC 1 cut(s) 10
AccI GTMKAC 1 cut(s) 857
AclWI GGATC 2 cut(s) 452, 558
AcsI RAATTY 4 cut(s) 250, 422, 667, 791
AcuI CTGAAG 2 cut(s) 356, 714
AfiI CCNNNNNNNGG 2 cut(s) 180, 181
AgsI TTSAA 5 cut(s) 202, 214, 421, 428, 494
AjnI CCWGG 2 cut(s) 70, 225
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
AluBI AGCT 3 cut(s) 265, 572, 650
AluI AGCT 3 cut(s) 265, 572, 650
Alw26I GTCTC 3 cut(s) 82, 147, 251
AlwI GGATC 2 cut(s) 452, 558
AlwNI CAGNNNCTG 1 cut(s) 844
ApeKI GCWGC 1 cut(s) 381
ApoI RAATTY 4 cut(s) 250, 422, 667, 791
AspLEI GCGC 2 cut(s) 27, 40
AspS9I GGNCC 2 cut(s) 68, 314
AsuHPI GGTGA 1 cut(s) 86
AsuNHI GCTAGC 1 cut(s) 377
AvaII GGWCC 2 cut(s) 68, 314
BbvI GCAGC 1 cut(s) 393
BccI CCATC 1 cut(s) 710
BciT130I CCWGG 2 cut(s) 72, 227
BcoDI GTCTC 3 cut(s) 82, 147, 251
BfaI CTAG 2 cut(s) 378, 470
BfmI CTRYAG 1 cut(s) 440
BfuAI ACCTGC 1 cut(s) 10
BisI GCNGC 1 cut(s) 382
BlsI GCNGC 1 cut(s) 383
Bme1390I CCNGG 2 cut(s) 72, 227
Bme18I GGWCC 2 cut(s) 68, 314
BmgT120I GGNCC 2 cut(s) 68, 314
BmiI GGNNCC 1 cut(s) 224
BmrFI CCNGG 2 cut(s) 72, 227
BmsI GCATC 2 cut(s) 49, 679
BmtI GCTAGC 1 cut(s) 381
BsaJI CCNNGG 2 cut(s) 179, 226
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 181
Bse3DI GCAATG 1 cut(s) 389
BseBI CCWGG 2 cut(s) 72, 227
BseDI CCNNGG 2 cut(s) 179, 226
BseGI GGATG 1 cut(s) 718
BseLI CCNNNNNNNGG 2 cut(s) 180, 181
BseMI GCAATG 1 cut(s) 389
BseMII CTCAG 6 cut(s) 48, 246, 275, 280, 363, 816
BseRI GAGGAG 1 cut(s) 842
BseXI GCAGC 1 cut(s) 393
BslFI GGGAC 2 cut(s) 209, 244
BslI CCNNNNNNNGG 2 cut(s) 180, 181
BsmAI GTCTC 3 cut(s) 82, 147, 251
BsmFI GGGAC 2 cut(s) 209, 244
Bsp143I GATC 5 cut(s) 163, 352, 363, 457, 550
BspCNI CTCAG 6 cut(s) 47, 247, 274, 279, 362, 817
BspHI TCATGA 1 cut(s) 514
BspLI GGNNCC 1 cut(s) 224
BspMI ACCTGC 1 cut(s) 10
BspOI GCTAGC 1 cut(s) 381
BspPI GGATC 2 cut(s) 452, 558
BsrDI GCAATG 1 cut(s) 389
BssECI CCNNGG 2 cut(s) 179, 226
BssMI GATC 5 cut(s) 163, 352, 363, 457, 550
BssNAI GTATAC 1 cut(s) 858
BssT1I CCWWGG 1 cut(s) 179
Bst1107I GTATAC 1 cut(s) 858
Bst2UI CCWGG 2 cut(s) 72, 227
Bst4CI ACNGT 1 cut(s) 505
Bst6I CTCTTC 3 cut(s) 444, 513, 772
BstC8I GCNNGC 1 cut(s) 379
BstDEI CTNAG 8 cut(s) 34, 255, 261, 266, 321, 341, 349, 825
BstF5I GGATG 1 cut(s) 718
BstHHI GCGC 2 cut(s) 27, 40
BstKTI GATC 5 cut(s) 166, 355, 366, 460, 553
BstMAI GTCTC 3 cut(s) 82, 147, 251
BstMBI GATC 5 cut(s) 163, 352, 363, 457, 550
BstNI CCWGG 2 cut(s) 72, 227
BstSCI CCNGG 2 cut(s) 70, 225
BstSFI CTRYAG 1 cut(s) 440
BstV1I GCAGC 1 cut(s) 393
BstX2I RGATCY 1 cut(s) 550
BstYI RGATCY 1 cut(s) 550
BstZ17I GTATAC 1 cut(s) 858
BtgZI GCGATG 1 cut(s) 318
BtsCI GGATG 1 cut(s) 718
BtsI GCAGTG 1 cut(s) 792
BtsIMutI CAGTG 2 cut(s) 792, 822
BveI ACCTGC 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 379
CaiI CAGNNNCTG 1 cut(s) 844
CciI TCATGA 1 cut(s) 514
CfoI GCGC 2 cut(s) 27, 40
Cfr13I GGNCC 2 cut(s) 68, 314
CviAII CATG 2 cut(s) 446, 515
CviJI RGCY 9 cut(s) 265, 377, 439, 539, 572, 604, 650, 803, 814
CviKI_1 RGCY 9 cut(s) 265, 377, 439, 539, 572, 604, 650, 803, 814
DdeI CTNAG 8 cut(s) 34, 255, 261, 266, 321, 341, 349, 825
DpnI GATC 5 cut(s) 165, 354, 365, 459, 552
DpnII GATC 5 cut(s) 163, 352, 363, 457, 550
Eam1104I CTCTTC 3 cut(s) 444, 513, 772
EarI CTCTTC 3 cut(s) 444, 513, 772
Eco130I CCWWGG 1 cut(s) 179
Eco47I GGWCC 2 cut(s) 68, 314
Eco57I CTGAAG 2 cut(s) 356, 714
EcoRI GAATTC 1 cut(s) 250
EcoRII CCWGG 2 cut(s) 70, 225
EcoT14I CCWWGG 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 2 cut(s) 449, 518
FaqI GGGAC 2 cut(s) 209, 244
FatI CATG 2 cut(s) 445, 514
FblI GTMKAC 1 cut(s) 857
Fnu4HI GCNGC 1 cut(s) 382
FokI GGATG 1 cut(s) 725
Fsp4HI GCNGC 1 cut(s) 382
FspAI RTGCGCAY 1 cut(s) 26
FspBI CTAG 2 cut(s) 378, 470
FspI TGCGCA 1 cut(s) 26
GlaI GCGC 2 cut(s) 26, 39
GluI GCNGC 1 cut(s) 382
HhaI GCGC 2 cut(s) 27, 40
Hin1II CATG 2 cut(s) 449, 518
Hin6I GCGC 2 cut(s) 25, 38
HinP1I GCGC 2 cut(s) 25, 38
HincII GTYRAC 1 cut(s) 501
HindII GTYRAC 1 cut(s) 501
HindIII AAGCTT 1 cut(s) 570
HinfI GANTC 8 cut(s) 90, 170, 259, 347, 417, 428, 835, 841
HpaI GTTAAC 1 cut(s) 501
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 4 cut(s) 77, 501, 759, 858
Hpy188I TCNGA 5 cut(s) 152, 256, 269, 352, 840
Hpy188III TCNNGA 4 cut(s) 167, 328, 515, 773
Hpy8I GTNNAC 4 cut(s) 77, 501, 759, 858
HpyAV CCTTC 8 cut(s) 185, 327, 488, 586, 605, 637, 689, 700
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 3 cut(s) 19, 287, 293
HpyF3I CTNAG 8 cut(s) 34, 255, 261, 266, 321, 341, 349, 825
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 2 cut(s) 449, 518
HspAI GCGC 2 cut(s) 25, 38
KspAI GTTAAC 1 cut(s) 501
Kzo9I GATC 5 cut(s) 163, 352, 363, 457, 550
Lsp1109I GCAGC 1 cut(s) 393
LweI GCATC 2 cut(s) 49, 679
MaeI CTAG 2 cut(s) 378, 470
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 4 cut(s) 344, 595, 733, 820
MalI GATC 5 cut(s) 165, 354, 365, 459, 552
MboI GATC 5 cut(s) 163, 352, 363, 457, 550
MboII GAAGA 5 cut(s) 461, 530, 535, 673, 759
MflI RGATCY 1 cut(s) 550
MluCI AATT 5 cut(s) 250, 422, 667, 700, 791
MlyI GAGTC 4 cut(s) 84, 253, 341, 850
MmeI TCCRAC 1 cut(s) 65
MnlI CCTC 6 cut(s) 90, 703, 720, 748, 775, 820
MseI TTAA 2 cut(s) 396, 500
MspR9I CCNGG 2 cut(s) 72, 227
MvaI CCWGG 2 cut(s) 72, 227
NdeII GATC 5 cut(s) 163, 352, 363, 457, 550
NheI GCTAGC 1 cut(s) 377
NlaIII CATG 2 cut(s) 449, 518
NlaIV GGNNCC 1 cut(s) 224
NmuCI GTSAC 2 cut(s) 344, 820
NsbI TGCGCA 1 cut(s) 26
PagI TCATGA 1 cut(s) 514
PaqCI CACCTGC 1 cut(s) 10
PfeI GAWTC 4 cut(s) 170, 417, 428, 835
PkrI GCNGC 1 cut(s) 383
PleI GAGTC 4 cut(s) 84, 253, 341, 849
PpsI GAGTC 4 cut(s) 84, 253, 341, 849
Psp6I CCWGG 2 cut(s) 70, 225
PspGI CCWGG 2 cut(s) 70, 225
PspN4I GGNNCC 1 cut(s) 224
PspPI GGNCC 2 cut(s) 68, 314
PstNI CAGNNNCTG 1 cut(s) 844
PsuI RGATCY 1 cut(s) 550
SaqAI TTAA 2 cut(s) 396, 500
SatI GCNGC 1 cut(s) 382
Sau3AI GATC 5 cut(s) 163, 352, 363, 457, 550
Sau96I GGNCC 2 cut(s) 68, 314
SchI GAGTC 4 cut(s) 84, 253, 341, 850
ScrFI CCNGG 2 cut(s) 72, 227
SfaNI GCATC 2 cut(s) 49, 679
SfcI CTRYAG 1 cut(s) 440
SinI GGWCC 2 cut(s) 68, 314
Sse9I AATT 5 cut(s) 250, 422, 667, 700, 791
SspMI CTAG 2 cut(s) 378, 470
StyD4I CCNGG 2 cut(s) 70, 225
StyI CCWWGG 1 cut(s) 179
TaaI ACNGT 1 cut(s) 505
TaiI ACGT 1 cut(s) 130
TasI AATT 5 cut(s) 250, 422, 667, 700, 791
TfiI GAWTC 4 cut(s) 170, 417, 428, 835
Tru1I TTAA 2 cut(s) 396, 500
Tru9I TTAA 2 cut(s) 396, 500
TscAI CASTG 2 cut(s) 792, 829
TseFI GTSAC 2 cut(s) 344, 820
TseI GCWGC 1 cut(s) 381
Tsp45I GTSAC 2 cut(s) 344, 820
TspDTI ATGAA 7 cut(s) 17, 138, 462, 503, 531, 531, 848
TspRI CASTG 2 cut(s) 792, 829
VpaK11BI GGWCC 2 cut(s) 68, 314
XapI RAATTY 4 cut(s) 250, 422, 667, 791
XmiI GTMKAC 1 cut(s) 857
XspI CTAG 2 cut(s) 378, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.