ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 115 |
| AccBSI | CCGCTC | 1 cut(s) | 321 |
| AciI | CCGC | 2 cut(s) | 321, 433 |
| AclWI | GGATC | 1 cut(s) | 187 |
| AcuI | CTGAAG | 1 cut(s) | 158 |
| AcvI | CACGTG | 1 cut(s) | 13 |
| AcyI | GRCGYC | 1 cut(s) | 112 |
| AfeI | AGCGCT | 1 cut(s) | 508 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 484 |
| AgsI | TTSAA | 3 cut(s) | 184, 307, 665 |
| AjiI | CACGTC | 1 cut(s) | 105 |
| AjnI | CCWGG | 1 cut(s) | 428 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 347, 379 |
| AluBI | AGCT | 3 cut(s) | 122, 187, 553 |
| AluI | AGCT | 3 cut(s) | 122, 187, 553 |
| Alw21I | GWGCWC | 2 cut(s) | 520, 555 |
| Alw26I | GTCTC | 2 cut(s) | 224, 401 |
| Alw44I | GTGCAC | 1 cut(s) | 516 |
| AlwI | GGATC | 1 cut(s) | 187 |
| Aor51HI | AGCGCT | 1 cut(s) | 508 |
| ApaLI | GTGCAC | 1 cut(s) | 516 |
| ApeKI | GCWGC | 3 cut(s) | 59, 99, 613 |
| AspLEI | GCGC | 1 cut(s) | 509 |
| AsuC2I | CCSGG | 1 cut(s) | 623 |
| AsuHPI | GGTGA | 1 cut(s) | 446 |
| BaeGI | GKGCMC | 1 cut(s) | 520 |
| BanII | GRGCYC | 1 cut(s) | 555 |
| BbrPI | CACGTG | 1 cut(s) | 13 |
| BbsI | GAAGAC | 1 cut(s) | 295 |
| Bbv12I | GWGCWC | 2 cut(s) | 520, 555 |
| BbvI | GCAGC | 3 cut(s) | 46, 86, 625 |
| BccI | CCATC | 1 cut(s) | 341 |
| BceAI | ACGGC | 2 cut(s) | 68, 132 |
| BciT130I | CCWGG | 1 cut(s) | 430 |
| BcnI | CCSGG | 1 cut(s) | 623 |
| BcoDI | GTCTC | 2 cut(s) | 224, 401 |
| BfmI | CTRYAG | 1 cut(s) | 272 |
| BfoI | RGCGCY | 1 cut(s) | 510 |
| BisI | GCNGC | 3 cut(s) | 60, 100, 614 |
| BlsI | GCNGC | 3 cut(s) | 61, 101, 615 |
| Bme1390I | CCNGG | 2 cut(s) | 430, 623 |
| BmgBI | CACGTC | 1 cut(s) | 105 |
| BmiI | GGNNCC | 2 cut(s) | 365, 418 |
| BmrFI | CCNGG | 2 cut(s) | 430, 623 |
| BmrI | ACTGGG | 1 cut(s) | 450 |
| BmuI | ACTGGG | 1 cut(s) | 450 |
| BpiI | GAAGAC | 1 cut(s) | 295 |
| BpuMI | CCSGG | 1 cut(s) | 623 |
| BsaAI | YACGTR | 1 cut(s) | 13 |
| BsaHI | GRCGYC | 1 cut(s) | 112 |
| BsaJI | CCNNGG | 2 cut(s) | 148, 524 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 484 |
| Bse1I | ACTGG | 2 cut(s) | 357, 445 |
| Bse3DI | GCAATG | 1 cut(s) | 423 |
| BseBI | CCWGG | 1 cut(s) | 430 |
| BseDI | CCNNGG | 2 cut(s) | 148, 524 |
| BseGI | GGATG | 1 cut(s) | 247 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 484 |
| BseMI | GCAATG | 1 cut(s) | 423 |
| BseMII | CTCAG | 1 cut(s) | 501 |
| BseNI | ACTGG | 2 cut(s) | 357, 445 |
| BseSI | GKGCMC | 1 cut(s) | 520 |
| BseXI | GCAGC | 3 cut(s) | 46, 86, 625 |
| BsgI | GTGCAG | 1 cut(s) | 85 |
| BsiHKAI | GWGCWC | 2 cut(s) | 520, 555 |
| BsiSI | CCGG | 2 cut(s) | 420, 622 |
| BslFI | GGGAC | 1 cut(s) | 91 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 484 |
| BsmAI | GTCTC | 2 cut(s) | 224, 401 |
| BsmBI | CGTCTC | 2 cut(s) | 224, 401 |
| BsmFI | GGGAC | 1 cut(s) | 91 |
| Bsp1286I | GDGCHC | 2 cut(s) | 520, 555 |
| Bsp143I | GATC | 6 cut(s) | 3, 192, 213, 262, 469, 643 |
| BspACI | CCGC | 2 cut(s) | 321, 433 |
| BspCNI | CTCAG | 1 cut(s) | 502 |
| BspLI | GGNNCC | 2 cut(s) | 365, 418 |
| BspMAI | CTGCAG | 1 cut(s) | 276 |
| BspPI | GGATC | 1 cut(s) | 187 |
| BsrBI | CCGCTC | 1 cut(s) | 321 |
| BsrDI | GCAATG | 1 cut(s) | 423 |
| BsrI | ACTGG | 2 cut(s) | 357, 445 |
| BssECI | CCNNGG | 2 cut(s) | 148, 524 |
| BssMI | GATC | 6 cut(s) | 3, 192, 213, 262, 469, 643 |
| BssNI | GRCGYC | 1 cut(s) | 112 |
| BssT1I | CCWWGG | 1 cut(s) | 524 |
| Bst2UI | CCWGG | 1 cut(s) | 430 |
| Bst4CI | ACNGT | 4 cut(s) | 293, 416, 452, 466 |
| BstACI | GRCGYC | 1 cut(s) | 112 |
| BstBAI | YACGTR | 1 cut(s) | 13 |
| BstC8I | GCNNGC | 1 cut(s) | 45 |
| BstDEI | CTNAG | 2 cut(s) | 372, 510 |
| BstDSI | CCRYGG | 1 cut(s) | 148 |
| BstEII | GGTNACC | 1 cut(s) | 452 |
| BstF5I | GGATG | 1 cut(s) | 247 |
| BstH2I | RGCGCY | 1 cut(s) | 510 |
| BstHHI | GCGC | 1 cut(s) | 509 |
| BstKTI | GATC | 6 cut(s) | 6, 195, 216, 265, 472, 646 |
| BstMAI | GTCTC | 2 cut(s) | 224, 401 |
| BstMBI | GATC | 6 cut(s) | 3, 192, 213, 262, 469, 643 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 68, 515 |
| BstNI | CCWGG | 1 cut(s) | 430 |
| BstPI | GGTNACC | 1 cut(s) | 452 |
| BstSCI | CCNGG | 2 cut(s) | 428, 621 |
| BstSFI | CTRYAG | 1 cut(s) | 272 |
| BstSLI | GKGCMC | 1 cut(s) | 520 |
| BstV1I | GCAGC | 3 cut(s) | 46, 86, 625 |
| BstV2I | GAAGAC | 1 cut(s) | 295 |
| BtgI | CCRYGG | 1 cut(s) | 148 |
| BtrI | CACGTC | 1 cut(s) | 105 |
| BtsCI | GGATG | 1 cut(s) | 247 |
| BtsI | GCAGTG | 1 cut(s) | 597 |
| BtsIMutI | CAGTG | 1 cut(s) | 597 |
| Cac8I | GCNNGC | 1 cut(s) | 45 |
| CfoI | GCGC | 1 cut(s) | 509 |
| CseI | GACGC | 2 cut(s) | 105, 156 |
| CviAII | CATG | 3 cut(s) | 386, 483, 560 |
| CviJI | RGCY | 7 cut(s) | 122, 137, 187, 332, 445, 553, 616 |
| CviKI_1 | RGCY | 7 cut(s) | 122, 137, 187, 332, 445, 553, 616 |
| DdeI | CTNAG | 2 cut(s) | 372, 510 |
| DpnI | GATC | 6 cut(s) | 5, 194, 215, 264, 471, 645 |
| DpnII | GATC | 6 cut(s) | 3, 192, 213, 262, 469, 643 |
| Ecl136II | GAGCTC | 1 cut(s) | 553 |
| Eco130I | CCWWGG | 1 cut(s) | 524 |
| Eco24I | GRGCYC | 1 cut(s) | 555 |
| Eco32I | GATATC | 2 cut(s) | 284, 358 |
| Eco47III | AGCGCT | 1 cut(s) | 508 |
| Eco53kI | GAGCTC | 1 cut(s) | 553 |
| Eco57I | CTGAAG | 1 cut(s) | 158 |
| Eco72I | CACGTG | 1 cut(s) | 13 |
| Eco91I | GGTNACC | 1 cut(s) | 452 |
| EcoICRI | GAGCTC | 1 cut(s) | 553 |
| EcoO65I | GGTNACC | 1 cut(s) | 452 |
| EcoRII | CCWGG | 1 cut(s) | 428 |
| EcoRV | GATATC | 2 cut(s) | 284, 358 |
| EcoT14I | CCWWGG | 1 cut(s) | 524 |
| EcoT38I | GRGCYC | 1 cut(s) | 555 |
| ErhI | CCWWGG | 1 cut(s) | 524 |
| Esp3I | CGTCTC | 2 cut(s) | 224, 401 |
| FaeI | CATG | 3 cut(s) | 389, 486, 563 |
| FaiI | YATR | 9 cut(s) | 54, 125, 387, 448, 484, 545, 561, 567, 651 |
| FaqI | GGGAC | 1 cut(s) | 91 |
| FatI | CATG | 3 cut(s) | 385, 482, 559 |
| Fnu4HI | GCNGC | 3 cut(s) | 60, 100, 614 |
| FokI | GGATG | 1 cut(s) | 254 |
| FriOI | GRGCYC | 1 cut(s) | 555 |
| Fsp4HI | GCNGC | 3 cut(s) | 60, 100, 614 |
| GlaI | GCGC | 1 cut(s) | 508 |
| GluI | GCNGC | 3 cut(s) | 60, 100, 614 |
| HaeII | RGCGCY | 1 cut(s) | 510 |
| HapII | CCGG | 2 cut(s) | 420, 622 |
| HgaI | GACGC | 2 cut(s) | 105, 156 |
| HhaI | GCGC | 1 cut(s) | 509 |
| Hin1I | GRCGYC | 1 cut(s) | 112 |
| Hin1II | CATG | 3 cut(s) | 389, 486, 563 |
| Hin6I | GCGC | 1 cut(s) | 507 |
| HinP1I | GCGC | 1 cut(s) | 507 |
| HincII | GTYRAC | 1 cut(s) | 438 |
| HindII | GTYRAC | 1 cut(s) | 438 |
| HinfI | GANTC | 1 cut(s) | 376 |
| HpaI | GTTAAC | 1 cut(s) | 438 |
| HpaII | CCGG | 2 cut(s) | 420, 622 |
| HphI | GGTGA | 1 cut(s) | 446 |
| Hpy166II | GTNNAC | 2 cut(s) | 438, 518 |
| Hpy188I | TCNGA | 4 cut(s) | 117, 229, 258, 637 |
| Hpy188III | TCNNGA | 1 cut(s) | 108 |
| Hpy8I | GTNNAC | 2 cut(s) | 438, 518 |
| Hpy99I | CGWCG | 4 cut(s) | 70, 99, 114, 172 |
| HpyAV | CCTTC | 7 cut(s) | 229, 305, 468, 566, 569, 596, 628 |
| HpyCH4III | ACNGT | 4 cut(s) | 293, 416, 452, 466 |
| HpyCH4IV | ACGT | 3 cut(s) | 12, 104, 112 |
| HpyCH4V | TGCA | 4 cut(s) | 102, 274, 518, 613 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 68, 515 |
| HpyF3I | CTNAG | 2 cut(s) | 372, 510 |
| HpySE526I | ACGT | 3 cut(s) | 12, 104, 112 |
| Hsp92I | GRCGYC | 1 cut(s) | 112 |
| Hsp92II | CATG | 3 cut(s) | 389, 486, 563 |
| HspAI | GCGC | 1 cut(s) | 507 |
| KspAI | GTTAAC | 1 cut(s) | 438 |
| Kzo9I | GATC | 6 cut(s) | 3, 192, 213, 262, 469, 643 |
| LmnI | GCTCC | 1 cut(s) | 558 |
| LpnPI | CCDG | 9 cut(s) | 119, 161, 338, 346, 415, 426, 433, 442, 635 |
| Lsp1109I | GCAGC | 3 cut(s) | 46, 86, 625 |
| MaeII | ACGT | 3 cut(s) | 12, 104, 112 |
| MaeIII | GTNAC | 2 cut(s) | 452, 473 |
| MalI | GATC | 6 cut(s) | 5, 194, 215, 264, 471, 645 |
| MbiI | CCGCTC | 1 cut(s) | 321 |
| MboI | GATC | 6 cut(s) | 3, 192, 213, 262, 469, 643 |
| MboII | GAAGA | 1 cut(s) | 295 |
| MhlI | GDGCHC | 2 cut(s) | 520, 555 |
| MluCI | AATT | 1 cut(s) | 250 |
| MlyI | GAGTC | 1 cut(s) | 385 |
| MmeI | TCCRAC | 2 cut(s) | 220, 615 |
| MnlI | CCTC | 5 cut(s) | 11, 121, 220, 317, 391 |
| MseI | TTAA | 4 cut(s) | 156, 288, 437, 503 |
| MslI | CAYNNNNRTG | 2 cut(s) | 390, 564 |
| MspI | CCGG | 2 cut(s) | 420, 622 |
| MspR9I | CCNGG | 2 cut(s) | 430, 623 |
| MvaI | CCWGG | 1 cut(s) | 430 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 68, 515 |
| NciI | CCSGG | 1 cut(s) | 623 |
| NdeII | GATC | 6 cut(s) | 3, 192, 213, 262, 469, 643 |
| NlaIII | CATG | 3 cut(s) | 389, 486, 563 |
| NlaIV | GGNNCC | 2 cut(s) | 365, 418 |
| NmuCI | GTSAC | 1 cut(s) | 452 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 176 |
| PfoI | TCCNGGA | 1 cut(s) | 621 |
| PkrI | GCNGC | 3 cut(s) | 61, 101, 615 |
| PleI | GAGTC | 1 cut(s) | 384 |
| PmaCI | CACGTG | 1 cut(s) | 13 |
| PmlI | CACGTG | 1 cut(s) | 13 |
| PpsI | GAGTC | 1 cut(s) | 384 |
| Ppu21I | YACGTR | 1 cut(s) | 13 |
| Psp124BI | GAGCTC | 1 cut(s) | 555 |
| Psp6I | CCWGG | 1 cut(s) | 428 |
| PspCI | CACGTG | 1 cut(s) | 13 |
| PspEI | GGTNACC | 1 cut(s) | 452 |
| PspGI | CCWGG | 1 cut(s) | 428 |
| PspN4I | GGNNCC | 2 cut(s) | 365, 418 |
| PstI | CTGCAG | 1 cut(s) | 276 |
| RseI | CAYNNNNRTG | 2 cut(s) | 390, 564 |
| SacI | GAGCTC | 1 cut(s) | 555 |
| SaqAI | TTAA | 4 cut(s) | 156, 288, 437, 503 |
| SatI | GCNGC | 3 cut(s) | 60, 100, 614 |
| Sau3AI | GATC | 6 cut(s) | 3, 192, 213, 262, 469, 643 |
| SchI | GAGTC | 1 cut(s) | 385 |
| ScrFI | CCNGG | 2 cut(s) | 430, 623 |
| SduI | GDGCHC | 2 cut(s) | 520, 555 |
| SfcI | CTRYAG | 1 cut(s) | 272 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 390, 564 |
| Sse9I | AATT | 1 cut(s) | 250 |
| SsiI | CCGC | 2 cut(s) | 321, 433 |
| SspI | AATATT | 1 cut(s) | 78 |
| SstI | GAGCTC | 1 cut(s) | 555 |
| StyD4I | CCNGG | 2 cut(s) | 428, 621 |
| StyI | CCWWGG | 1 cut(s) | 524 |
| TaaI | ACNGT | 4 cut(s) | 293, 416, 452, 466 |
| TaiI | ACGT | 3 cut(s) | 15, 107, 115 |
| TaqI | TCGA | 2 cut(s) | 212, 379 |
| TasI | AATT | 1 cut(s) | 250 |
| Tru1I | TTAA | 4 cut(s) | 156, 288, 437, 503 |
| Tru9I | TTAA | 4 cut(s) | 156, 288, 437, 503 |
| TscAI | CASTG | 1 cut(s) | 597 |
| TseFI | GTSAC | 1 cut(s) | 452 |
| TseI | GCWGC | 3 cut(s) | 59, 99, 613 |
| Tsp45I | GTSAC | 1 cut(s) | 452 |
| TspDTI | ATGAA | 2 cut(s) | 324, 548 |
| TspGWI | ACGGA | 2 cut(s) | 356, 425 |
| TspRI | CASTG | 1 cut(s) | 597 |
| VneI | GTGCAC | 1 cut(s) | 516 |
| ZraI | GACGTC | 1 cut(s) | 113 |