ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 188 |
| Acc36I | ACCTGC | 1 cut(s) | 188 |
| AccB1I | GGYRCC | 1 cut(s) | 807 |
| AccII | CGCG | 1 cut(s) | 466 |
| AciI | CCGC | 3 cut(s) | 304, 464, 602 |
| AclWI | GGATC | 2 cut(s) | 229, 235 |
| AcsI | RAATTY | 1 cut(s) | 429 |
| AdeI | CACNNNGTG | 1 cut(s) | 53 |
| AfaI | GTAC | 1 cut(s) | 331 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 348, 631, 803 |
| AgsI | TTSAA | 5 cut(s) | 61, 107, 255, 737, 839 |
| AjnI | CCWGG | 3 cut(s) | 334, 525, 863 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 563, 595 |
| AluBI | AGCT | 1 cut(s) | 618 |
| AluI | AGCT | 1 cut(s) | 618 |
| Alw26I | GTCTC | 2 cut(s) | 560, 829 |
| AlwI | GGATC | 2 cut(s) | 229, 235 |
| Ama87I | CYCGRG | 1 cut(s) | 630 |
| AoxI | GGCC | 1 cut(s) | 339 |
| ApeKI | GCWGC | 3 cut(s) | 247, 751, 781 |
| ApoI | RAATTY | 1 cut(s) | 429 |
| AspA2I | CCTAGG | 1 cut(s) | 154 |
| AspLEI | GCGC | 1 cut(s) | 312 |
| AspS9I | GGNCC | 3 cut(s) | 339, 523, 661 |
| AvaI | CYCGRG | 1 cut(s) | 630 |
| AvaII | GGWCC | 2 cut(s) | 523, 661 |
| AvrII | CCTAGG | 1 cut(s) | 154 |
| BaeGI | GKGCMC | 1 cut(s) | 810 |
| BanI | GGYRCC | 1 cut(s) | 807 |
| BbsI | GAAGAC | 2 cut(s) | 389, 466 |
| BbvI | GCAGC | 3 cut(s) | 259, 763, 793 |
| BccI | CCATC | 2 cut(s) | 287, 449 |
| BceAI | ACGGC | 3 cut(s) | 65, 273, 615 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 129, 163 |
| BciT130I | CCWGG | 3 cut(s) | 336, 527, 865 |
| BclI | TGATCA | 1 cut(s) | 163 |
| BcoDI | GTCTC | 2 cut(s) | 560, 829 |
| BfaI | CTAG | 2 cut(s) | 155, 651 |
| BfoI | RGCGCY | 1 cut(s) | 313 |
| BfuAI | ACCTGC | 1 cut(s) | 188 |
| BglII | AGATCT | 1 cut(s) | 63 |
| BisI | GCNGC | 3 cut(s) | 248, 752, 782 |
| BlnI | CCTAGG | 1 cut(s) | 154 |
| BlpI | GCTNAGC | 1 cut(s) | 182 |
| BlsI | GCNGC | 3 cut(s) | 249, 753, 783 |
| Bme1390I | CCNGG | 3 cut(s) | 336, 527, 865 |
| Bme18I | GGWCC | 2 cut(s) | 523, 661 |
| BmeT110I | CYCGRG | 1 cut(s) | 630 |
| BmgT120I | GGNCC | 3 cut(s) | 339, 523, 661 |
| BmiI | GGNNCC | 2 cut(s) | 340, 809 |
| BmrFI | CCNGG | 3 cut(s) | 336, 527, 865 |
| BmsI | GCATC | 4 cut(s) | 137, 262, 449, 850 |
| BpiI | GAAGAC | 2 cut(s) | 389, 466 |
| BpmI | CTGGAG | 1 cut(s) | 318 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 182 |
| BpuEI | CTTGAG | 1 cut(s) | 356 |
| BsaBI | GATNNNNATC | 2 cut(s) | 68, 239 |
| BsaI | GGTCTC | 1 cut(s) | 829 |
| BsaJI | CCNNGG | 4 cut(s) | 154, 335, 401, 526 |
| BsaWI | WCCGGW | 1 cut(s) | 469 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 348, 631, 803 |
| Bse1I | ACTGG | 2 cut(s) | 850, 861 |
| Bse3DI | GCAATG | 1 cut(s) | 282 |
| Bse8I | GATNNNNATC | 2 cut(s) | 68, 239 |
| BseBI | CCWGG | 3 cut(s) | 336, 527, 865 |
| BseDI | CCNNGG | 4 cut(s) | 154, 335, 401, 526 |
| BseGI | GGATG | 3 cut(s) | 460, 621, 865 |
| BseJI | GATNNNNATC | 2 cut(s) | 68, 239 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 348, 631, 803 |
| BseMI | GCAATG | 1 cut(s) | 282 |
| BseMII | CTCAG | 1 cut(s) | 173 |
| BseNI | ACTGG | 2 cut(s) | 850, 861 |
| BseRI | GAGGAG | 1 cut(s) | 727 |
| BseSI | GKGCMC | 1 cut(s) | 810 |
| BseXI | GCAGC | 3 cut(s) | 259, 763, 793 |
| BsgI | GTGCAG | 1 cut(s) | 711 |
| Bsh1236I | CGCG | 1 cut(s) | 466 |
| Bsh1285I | CGRYCG | 1 cut(s) | 470 |
| BshFI | GGCC | 1 cut(s) | 341 |
| BshNI | GGYRCC | 1 cut(s) | 807 |
| BsiEI | CGRYCG | 1 cut(s) | 470 |
| BsiHKCI | CYCGRG | 1 cut(s) | 630 |
| BsiSI | CCGG | 2 cut(s) | 244, 470 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 348, 631, 803 |
| BsmAI | GTCTC | 2 cut(s) | 560, 829 |
| BsmBI | CGTCTC | 1 cut(s) | 560 |
| BsnI | GGCC | 1 cut(s) | 341 |
| Bso31I | GGTCTC | 1 cut(s) | 829 |
| BsoBI | CYCGRG | 1 cut(s) | 630 |
| Bsp1286I | GDGCHC | 1 cut(s) | 810 |
| Bsp143I | GATC | 5 cut(s) | 63, 69, 163, 234, 240 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 182 |
| BspACI | CCGC | 3 cut(s) | 304, 464, 602 |
| BspANI | GGCC | 1 cut(s) | 341 |
| BspCNI | CTCAG | 1 cut(s) | 174 |
| BspFNI | CGCG | 1 cut(s) | 466 |
| BspHI | TCATGA | 1 cut(s) | 766 |
| BspLI | GGNNCC | 2 cut(s) | 340, 809 |
| BspMI | ACCTGC | 1 cut(s) | 188 |
| BspPI | GGATC | 2 cut(s) | 229, 235 |
| BspT107I | GGYRCC | 1 cut(s) | 807 |
| BspTNI | GGTCTC | 1 cut(s) | 829 |
| BsrDI | GCAATG | 1 cut(s) | 282 |
| BsrI | ACTGG | 2 cut(s) | 850, 861 |
| BssECI | CCNNGG | 4 cut(s) | 154, 335, 401, 526 |
| BssMI | GATC | 5 cut(s) | 63, 69, 163, 234, 240 |
| BssT1I | CCWWGG | 1 cut(s) | 154 |
| Bst2UI | CCWGG | 3 cut(s) | 336, 527, 865 |
| Bst4CI | ACNGT | 1 cut(s) | 395 |
| Bst6I | CTCTTC | 1 cut(s) | 704 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 860 |
| BstC8I | GCNNGC | 2 cut(s) | 54, 195 |
| BstDEI | CTNAG | 1 cut(s) | 182 |
| BstDSI | CCRYGG | 1 cut(s) | 401 |
| BstF5I | GGATG | 3 cut(s) | 460, 621, 865 |
| BstFNI | CGCG | 1 cut(s) | 466 |
| BstH2I | RGCGCY | 1 cut(s) | 313 |
| BstHHI | GCGC | 1 cut(s) | 312 |
| BstKTI | GATC | 5 cut(s) | 66, 72, 166, 237, 243 |
| BstMAI | GTCTC | 2 cut(s) | 560, 829 |
| BstMBI | GATC | 5 cut(s) | 63, 69, 163, 234, 240 |
| BstMCI | CGRYCG | 1 cut(s) | 470 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 787, 860 |
| BstNI | CCWGG | 3 cut(s) | 336, 527, 865 |
| BstSCI | CCNGG | 3 cut(s) | 334, 525, 863 |
| BstSLI | GKGCMC | 1 cut(s) | 810 |
| BstUI | CGCG | 1 cut(s) | 466 |
| BstV1I | GCAGC | 3 cut(s) | 259, 763, 793 |
| BstV2I | GAAGAC | 2 cut(s) | 389, 466 |
| BstX2I | RGATCY | 3 cut(s) | 63, 234, 240 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 485, 552 |
| BstYI | RGATCY | 3 cut(s) | 63, 234, 240 |
| BsuRI | GGCC | 1 cut(s) | 341 |
| BtgI | CCRYGG | 1 cut(s) | 401 |
| BtgZI | GCGATG | 1 cut(s) | 160 |
| BtsCI | GGATG | 3 cut(s) | 460, 621, 865 |
| BtsI | GCAGTG | 1 cut(s) | 791 |
| BtsIMutI | CAGTG | 3 cut(s) | 342, 791, 854 |
| BveI | ACCTGC | 1 cut(s) | 188 |
| Cac8I | GCNNGC | 2 cut(s) | 54, 195 |
| CciI | TCATGA | 1 cut(s) | 766 |
| CfoI | GCGC | 1 cut(s) | 312 |
| Cfr13I | GGNCC | 3 cut(s) | 339, 523, 661 |
| CseI | GACGC | 1 cut(s) | 131 |
| Csp6I | GTAC | 1 cut(s) | 330 |
| CviAII | CATG | 3 cut(s) | 167, 755, 767 |
| CviJI | RGCY | 9 cut(s) | 193, 250, 260, 341, 377, 477, 500, 618, 762 |
| CviKI_1 | RGCY | 9 cut(s) | 193, 250, 260, 341, 377, 477, 500, 618, 762 |
| CviQI | GTAC | 1 cut(s) | 330 |
| DdeI | CTNAG | 1 cut(s) | 182 |
| DpnI | GATC | 5 cut(s) | 65, 71, 165, 236, 242 |
| DpnII | GATC | 5 cut(s) | 63, 69, 163, 234, 240 |
| DraIII | CACNNNGTG | 1 cut(s) | 53 |
| Eam1104I | CTCTTC | 1 cut(s) | 704 |
| EarI | CTCTTC | 1 cut(s) | 704 |
| EciI | GGCGGA | 1 cut(s) | 617 |
| Eco130I | CCWWGG | 1 cut(s) | 154 |
| Eco31I | GGTCTC | 1 cut(s) | 829 |
| Eco32I | GATATC | 2 cut(s) | 367, 719 |
| Eco47I | GGWCC | 2 cut(s) | 523, 661 |
| Eco88I | CYCGRG | 1 cut(s) | 630 |
| EcoRII | CCWGG | 3 cut(s) | 334, 525, 863 |
| EcoRV | GATATC | 2 cut(s) | 367, 719 |
| EcoT14I | CCWWGG | 1 cut(s) | 154 |
| ErhI | CCWWGG | 1 cut(s) | 154 |
| Esp3I | CGTCTC | 1 cut(s) | 560 |
| FaeI | CATG | 3 cut(s) | 170, 758, 770 |
| FatI | CATG | 3 cut(s) | 166, 754, 766 |
| FbaI | TGATCA | 1 cut(s) | 163 |
| Fnu4HI | GCNGC | 3 cut(s) | 248, 752, 782 |
| FokI | GGATG | 2 cut(s) | 467, 608 |
| Fsp4HI | GCNGC | 3 cut(s) | 248, 752, 782 |
| FspBI | CTAG | 2 cut(s) | 155, 651 |
| GlaI | GCGC | 1 cut(s) | 311 |
| GluI | GCNGC | 3 cut(s) | 248, 752, 782 |
| GsuI | CTGGAG | 1 cut(s) | 318 |
| HaeII | RGCGCY | 1 cut(s) | 313 |
| HaeIII | GGCC | 1 cut(s) | 341 |
| HapII | CCGG | 2 cut(s) | 244, 470 |
| HgaI | GACGC | 1 cut(s) | 131 |
| HhaI | GCGC | 1 cut(s) | 312 |
| Hin1II | CATG | 3 cut(s) | 170, 758, 770 |
| Hin6I | GCGC | 1 cut(s) | 310 |
| HinP1I | GCGC | 1 cut(s) | 310 |
| HinfI | GANTC | 3 cut(s) | 356, 560, 737 |
| HpaII | CCGG | 2 cut(s) | 244, 470 |
| Hpy166II | GTNNAC | 1 cut(s) | 523 |
| Hpy188I | TCNGA | 5 cut(s) | 445, 565, 613, 661, 672 |
| Hpy188III | TCNNGA | 7 cut(s) | 16, 67, 100, 217, 238, 706, 767 |
| Hpy8I | GTNNAC | 1 cut(s) | 523 |
| HpyAV | CCTTC | 4 cut(s) | 51, 261, 281, 565 |
| HpyCH4III | ACNGT | 1 cut(s) | 395 |
| HpyCH4IV | ACGT | 1 cut(s) | 793 |
| HpyCH4V | TGCA | 7 cut(s) | 150, 170, 275, 512, 692, 751, 854 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 787, 860 |
| HpyF3I | CTNAG | 1 cut(s) | 182 |
| HpySE526I | ACGT | 1 cut(s) | 793 |
| Hsp92II | CATG | 3 cut(s) | 170, 758, 770 |
| HspAI | GCGC | 1 cut(s) | 310 |
| Ksp22I | TGATCA | 1 cut(s) | 163 |
| Kzo9I | GATC | 5 cut(s) | 63, 69, 163, 234, 240 |
| Lsp1109I | GCAGC | 3 cut(s) | 259, 763, 793 |
| LweI | GCATC | 4 cut(s) | 137, 262, 449, 850 |
| MaeI | CTAG | 2 cut(s) | 155, 651 |
| MaeII | ACGT | 1 cut(s) | 793 |
| MalI | GATC | 5 cut(s) | 65, 71, 165, 236, 242 |
| MboI | GATC | 5 cut(s) | 63, 69, 163, 234, 240 |
| MboII | GAAGA | 7 cut(s) | 73, 236, 244, 389, 471, 721, 844 |
| MflI | RGATCY | 3 cut(s) | 63, 234, 240 |
| MhlI | GDGCHC | 1 cut(s) | 810 |
| MluCI | AATT | 5 cut(s) | 19, 89, 429, 449, 515 |
| MmeI | TCCRAC | 2 cut(s) | 561, 639 |
| MnlI | CCTC | 6 cut(s) | 166, 277, 380, 490, 705, 751 |
| MseI | TTAA | 1 cut(s) | 423 |
| MspI | CCGG | 2 cut(s) | 244, 470 |
| MspR9I | CCNGG | 3 cut(s) | 336, 527, 865 |
| MvaI | CCWGG | 3 cut(s) | 336, 527, 865 |
| MvnI | CGCG | 1 cut(s) | 466 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 787, 860 |
| NdeII | GATC | 5 cut(s) | 63, 69, 163, 234, 240 |
| NlaIII | CATG | 3 cut(s) | 170, 758, 770 |
| NlaIV | GGNNCC | 2 cut(s) | 340, 809 |
| PagI | TCATGA | 1 cut(s) | 766 |
| PaqCI | CACCTGC | 1 cut(s) | 188 |
| PfeI | GAWTC | 3 cut(s) | 356, 560, 737 |
| PkrI | GCNGC | 3 cut(s) | 249, 753, 783 |
| Psp6I | CCWGG | 3 cut(s) | 334, 525, 863 |
| PspGI | CCWGG | 3 cut(s) | 334, 525, 863 |
| PspN4I | GGNNCC | 2 cut(s) | 340, 809 |
| PspPI | GGNCC | 3 cut(s) | 339, 523, 661 |
| PsuI | RGATCY | 3 cut(s) | 63, 234, 240 |
| RsaI | GTAC | 1 cut(s) | 331 |
| RsaNI | GTAC | 1 cut(s) | 330 |
| SaqAI | TTAA | 1 cut(s) | 423 |
| SatI | GCNGC | 3 cut(s) | 248, 752, 782 |
| Sau3AI | GATC | 5 cut(s) | 63, 69, 163, 234, 240 |
| Sau96I | GGNCC | 3 cut(s) | 339, 523, 661 |
| ScrFI | CCNGG | 3 cut(s) | 336, 527, 865 |
| SduI | GDGCHC | 1 cut(s) | 810 |
| SetI | ASST | 9 cut(s) | 9, 156, 202, 528, 576, 620, 652, 728, 796 |
| SfaNI | GCATC | 4 cut(s) | 137, 262, 449, 850 |
| SinI | GGWCC | 2 cut(s) | 523, 661 |
| SmlI | CTYRAG | 1 cut(s) | 371 |
| SmoI | CTYRAG | 1 cut(s) | 371 |
| Sse9I | AATT | 5 cut(s) | 19, 89, 429, 449, 515 |
| SsiI | CCGC | 3 cut(s) | 304, 464, 602 |
| SspMI | CTAG | 2 cut(s) | 155, 651 |
| StyD4I | CCNGG | 3 cut(s) | 334, 525, 863 |
| StyI | CCWWGG | 1 cut(s) | 154 |
| TaaI | ACNGT | 1 cut(s) | 395 |
| TaiI | ACGT | 1 cut(s) | 796 |
| TaqI | TCGA | 1 cut(s) | 135 |
| TasI | AATT | 5 cut(s) | 19, 89, 429, 449, 515 |
| TfiI | GAWTC | 3 cut(s) | 356, 560, 737 |
| Tru1I | TTAA | 1 cut(s) | 423 |
| Tru9I | TTAA | 1 cut(s) | 423 |
| TscAI | CASTG | 3 cut(s) | 349, 791, 861 |
| TseI | GCWGC | 3 cut(s) | 247, 751, 781 |
| TspDTI | ATGAA | 3 cut(s) | 17, 237, 610 |
| TspGWI | ACGGA | 1 cut(s) | 390 |
| TspRI | CASTG | 3 cut(s) | 349, 791, 861 |
| VpaK11BI | GGWCC | 2 cut(s) | 523, 661 |
| XapI | RAATTY | 1 cut(s) | 429 |
| XmaJI | CCTAGG | 1 cut(s) | 154 |
| XspI | CTAG | 2 cut(s) | 155, 651 |