ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_long | PF17177 | 132 - 262 | 5.1e-09 | Pentacotripeptide-repeat region of PRORP |
| PPR_1 | PF12854 | 145 - 176 | 1.3e-07 | PPR repeat |
| PPR_2 | PF13041 | 148 - 193 | 7.2e-09 | PPR repeat family |
| PPR_1 | PF12854 | 179 - 211 | 1.8e-07 | PPR repeat |
| PPR_2 | PF13041 | 183 - 231 | 8e-12 | PPR repeat family |
| PPR_long | PF17177 | 188 - 340 | 1e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 207 - 263 | 5.5e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 215 - 243 | 8.5e-07 | PPR repeat |
| PPR_2 | PF13041 | 218 - 267 | 1.2e-13 | PPR repeat family |
| PPR_1 | PF12854 | 251 - 280 | 1.3e-10 | PPR repeat |
| PPR_2 | PF13041 | 253 - 291 | 8.4e-09 | PPR repeat family |
| PPR | PF01535 | 256 - 286 | 3.6e-07 | PPR repeat |
| PPR_3 | PF13812 | 277 - 332 | 1.5e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 285 - 317 | 2.7e-08 | PPR repeat |
| PPR_2 | PF13041 | 288 - 337 | 5.9e-16 | PPR repeat family |
| PPR | PF01535 | 291 - 321 | 6.3e-07 | PPR repeat |
| PPR_2 | PF13041 | 323 - 372 | 2.5e-08 | PPR repeat family |
| PPR | PF01535 | 326 - 356 | 7.9e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1044 |
| AciI | CCGC | 1 cut(s) | 1484 |
| AclWI | GGATC | 1 cut(s) | 1213 |
| AcsI | RAATTY | 2 cut(s) | 303, 565 |
| AfaI | GTAC | 5 cut(s) | 252, 668, 899, 1204, 1378 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 218 |
| AluBI | AGCT | 9 cut(s) | 45, 109, 278, 408, 611, 779, 842, 1199, 1466 |
| AluI | AGCT | 9 cut(s) | 45, 109, 278, 408, 611, 779, 842, 1199, 1466 |
| Alw26I | GTCTC | 2 cut(s) | 21, 287 |
| AlwI | GGATC | 1 cut(s) | 1213 |
| AoxI | GGCC | 2 cut(s) | 504, 1517 |
| ApoI | RAATTY | 2 cut(s) | 303, 565 |
| AseI | ATTAAT | 1 cut(s) | 857 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 343 |
| AspLEI | GCGC | 1 cut(s) | 1033 |
| AspS9I | GGNCC | 2 cut(s) | 4, 645 |
| AsuHPI | GGTGA | 3 cut(s) | 640, 1287, 1300 |
| AsuII | TTCGAA | 1 cut(s) | 1068 |
| AvaII | GGWCC | 2 cut(s) | 4, 645 |
| BccI | CCATC | 7 cut(s) | 320, 625, 782, 817, 887, 1045, 1273 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 811, 845 |
| BclI | TGATCA | 2 cut(s) | 1260, 1305 |
| BcoDI | GTCTC | 2 cut(s) | 21, 287 |
| BfaI | CTAG | 4 cut(s) | 141, 288, 1200, 1460 |
| BfmI | CTRYAG | 1 cut(s) | 901 |
| BisI | GCNGC | 1 cut(s) | 1485 |
| BlsI | GCNGC | 1 cut(s) | 1486 |
| Bme18I | GGWCC | 2 cut(s) | 4, 645 |
| BmgT120I | GGNCC | 2 cut(s) | 4, 645 |
| BmiI | GGNNCC | 1 cut(s) | 646 |
| BmsI | GCATC | 5 cut(s) | 12, 703, 972, 1138, 1348 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1034 |
| Bpu14I | TTCGAA | 1 cut(s) | 1068 |
| Bsa29I | ATCGAT | 1 cut(s) | 576 |
| BsaJI | CCNNGG | 2 cut(s) | 1298, 1341 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 52, 82 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 218 |
| Bse3DI | GCAATG | 1 cut(s) | 924 |
| BseCI | ATCGAT | 1 cut(s) | 576 |
| BseDI | CCNNGG | 2 cut(s) | 1298, 1341 |
| BseGI | GGATG | 7 cut(s) | 170, 505, 718, 793, 963, 1081, 1308 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 218 |
| BseMI | GCAATG | 1 cut(s) | 924 |
| BseMII | CTCAG | 1 cut(s) | 339 |
| BshFI | GGCC | 2 cut(s) | 506, 1519 |
| BshVI | ATCGAT | 1 cut(s) | 576 |
| BslFI | GGGAC | 1 cut(s) | 939 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 218 |
| BsmAI | GTCTC | 2 cut(s) | 21, 287 |
| BsmFI | GGGAC | 1 cut(s) | 939 |
| BsmI | GAATGC | 1 cut(s) | 1096 |
| BsnI | GGCC | 2 cut(s) | 506, 1519 |
| Bsp119I | TTCGAA | 1 cut(s) | 1068 |
| Bsp1407I | TGTACA | 2 cut(s) | 250, 666 |
| Bsp143I | GATC | 7 cut(s) | 358, 493, 573, 1118, 1218, 1260, 1305 |
| Bsp19I | CCATGG | 1 cut(s) | 1298 |
| BspACI | CCGC | 1 cut(s) | 1484 |
| BspANI | GGCC | 2 cut(s) | 506, 1519 |
| BspCNI | CTCAG | 1 cut(s) | 340 |
| BspDI | ATCGAT | 1 cut(s) | 576 |
| BspLI | GGNNCC | 1 cut(s) | 646 |
| BspMAI | CTGCAG | 1 cut(s) | 905 |
| BspPI | GGATC | 1 cut(s) | 1213 |
| BspT104I | TTCGAA | 1 cut(s) | 1068 |
| BsrDI | GCAATG | 1 cut(s) | 924 |
| BsrGI | TGTACA | 2 cut(s) | 250, 666 |
| BssECI | CCNNGG | 2 cut(s) | 1298, 1341 |
| BssMI | GATC | 7 cut(s) | 358, 493, 573, 1118, 1218, 1260, 1305 |
| BssT1I | CCWWGG | 1 cut(s) | 1298 |
| Bst4CI | ACNGT | 3 cut(s) | 482, 658, 1161 |
| Bst6I | CTCTTC | 2 cut(s) | 697, 1487 |
| BstAUI | TGTACA | 2 cut(s) | 250, 666 |
| BstBI | TTCGAA | 1 cut(s) | 1068 |
| BstDEI | CTNAG | 2 cut(s) | 348, 1034 |
| BstDSI | CCRYGG | 1 cut(s) | 1298 |
| BstF5I | GGATG | 7 cut(s) | 170, 505, 718, 793, 963, 1081, 1308 |
| BstHHI | GCGC | 1 cut(s) | 1033 |
| BstKTI | GATC | 7 cut(s) | 361, 496, 576, 1121, 1221, 1263, 1308 |
| BstMAI | GTCTC | 2 cut(s) | 21, 287 |
| BstMBI | GATC | 7 cut(s) | 358, 493, 573, 1118, 1218, 1260, 1305 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1409 |
| BstNSI | RCATGY | 1 cut(s) | 251 |
| BstSFI | CTRYAG | 1 cut(s) | 901 |
| Bsu15I | ATCGAT | 1 cut(s) | 576 |
| BsuRI | GGCC | 2 cut(s) | 506, 1519 |
| BsuTUI | ATCGAT | 1 cut(s) | 576 |
| BtgI | CCRYGG | 1 cut(s) | 1298 |
| BtgZI | GCGATG | 1 cut(s) | 836 |
| BtsCI | GGATG | 7 cut(s) | 170, 505, 718, 793, 963, 1081, 1308 |
| BtsI | GCAGTG | 1 cut(s) | 1290 |
| BtsIMutI | CAGTG | 2 cut(s) | 654, 1290 |
| CfoI | GCGC | 1 cut(s) | 1033 |
| Cfr13I | GGNCC | 2 cut(s) | 4, 645 |
| ClaI | ATCGAT | 1 cut(s) | 576 |
| CseI | GACGC | 1 cut(s) | 1262 |
| Csp6I | GTAC | 5 cut(s) | 251, 667, 898, 1203, 1377 |
| CviAII | CATG | 7 cut(s) | 132, 248, 367, 998, 1234, 1299, 1448 |
| CviQI | GTAC | 5 cut(s) | 251, 667, 898, 1203, 1377 |
| DdeI | CTNAG | 2 cut(s) | 348, 1034 |
| DpnI | GATC | 7 cut(s) | 360, 495, 575, 1120, 1220, 1262, 1307 |
| DpnII | GATC | 7 cut(s) | 358, 493, 573, 1118, 1218, 1260, 1305 |
| Eam1104I | CTCTTC | 2 cut(s) | 697, 1487 |
| EarI | CTCTTC | 2 cut(s) | 697, 1487 |
| Eco130I | CCWWGG | 1 cut(s) | 1298 |
| Eco147I | AGGCCT | 1 cut(s) | 1519 |
| Eco47I | GGWCC | 2 cut(s) | 4, 645 |
| EcoT14I | CCWWGG | 1 cut(s) | 1298 |
| EcoT22I | ATGCAT | 2 cut(s) | 718, 1363 |
| ErhI | CCWWGG | 1 cut(s) | 1298 |
| FaeI | CATG | 7 cut(s) | 135, 251, 370, 1001, 1237, 1302, 1451 |
| FaqI | GGGAC | 1 cut(s) | 939 |
| FatI | CATG | 7 cut(s) | 131, 247, 366, 997, 1233, 1298, 1447 |
| FauNDI | CATATG | 3 cut(s) | 525, 718, 1207 |
| FbaI | TGATCA | 2 cut(s) | 1260, 1305 |
| Fnu4HI | GCNGC | 1 cut(s) | 1485 |
| FokI | GGATG | 7 cut(s) | 157, 512, 725, 800, 950, 1088, 1315 |
| Fsp4HI | GCNGC | 1 cut(s) | 1485 |
| FspBI | CTAG | 4 cut(s) | 141, 288, 1200, 1460 |
| GlaI | GCGC | 1 cut(s) | 1032 |
| GluI | GCNGC | 1 cut(s) | 1485 |
| HaeIII | GGCC | 2 cut(s) | 506, 1519 |
| HgaI | GACGC | 1 cut(s) | 1262 |
| HhaI | GCGC | 1 cut(s) | 1033 |
| Hin1II | CATG | 7 cut(s) | 135, 251, 370, 1001, 1237, 1302, 1451 |
| Hin6I | GCGC | 1 cut(s) | 1031 |
| HinP1I | GCGC | 1 cut(s) | 1031 |
| HincII | GTYRAC | 1 cut(s) | 265 |
| HindII | GTYRAC | 1 cut(s) | 265 |
| HindIII | AAGCTT | 2 cut(s) | 43, 1464 |
| HinfI | GANTC | 6 cut(s) | 61, 446, 578, 1324, 1429, 1441 |
| HphI | GGTGA | 3 cut(s) | 640, 1287, 1300 |
| Hpy166II | GTNNAC | 2 cut(s) | 265, 1157 |
| Hpy188I | TCNGA | 6 cut(s) | 21, 60, 349, 1189, 1342, 1509 |
| Hpy188III | TCNNGA | 3 cut(s) | 121, 443, 497 |
| Hpy8I | GTNNAC | 2 cut(s) | 265, 1157 |
| HpyAV | CCTTC | 5 cut(s) | 36, 676, 736, 943, 1120 |
| HpyCH4III | ACNGT | 3 cut(s) | 482, 658, 1161 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1409 |
| HpyF3I | CTNAG | 2 cut(s) | 348, 1034 |
| Hsp92II | CATG | 7 cut(s) | 135, 251, 370, 1001, 1237, 1302, 1451 |
| HspAI | GCGC | 1 cut(s) | 1031 |
| Ksp22I | TGATCA | 2 cut(s) | 1260, 1305 |
| Kzo9I | GATC | 7 cut(s) | 358, 493, 573, 1118, 1218, 1260, 1305 |
| LweI | GCATC | 5 cut(s) | 12, 703, 972, 1138, 1348 |
| MaeI | CTAG | 4 cut(s) | 141, 288, 1200, 1460 |
| MaeIII | GTNAC | 2 cut(s) | 476, 993 |
| MalI | GATC | 7 cut(s) | 360, 495, 575, 1120, 1220, 1262, 1307 |
| MboI | GATC | 7 cut(s) | 358, 493, 573, 1118, 1218, 1260, 1305 |
| MboII | GAAGA | 7 cut(s) | 218, 441, 714, 745, 1157, 1255, 1504 |
| MfeI | CAATTG | 1 cut(s) | 670 |
| MluCI | AATT | 9 cut(s) | 231, 270, 303, 565, 670, 1059, 1169, 1264, 1503 |
| MlyI | GAGTC | 1 cut(s) | 55 |
| MmeI | TCCRAC | 1 cut(s) | 1122 |
| Mph1103I | ATGCAT | 2 cut(s) | 718, 1363 |
| MroXI | GAANNNNTTC | 1 cut(s) | 343 |
| MseI | TTAA | 4 cut(s) | 834, 857, 1314, 1502 |
| MslI | CAYNNNNRTG | 1 cut(s) | 130 |
| MspA1I | CMGCKG | 1 cut(s) | 779 |
| MunI | CAATTG | 1 cut(s) | 670 |
| Mva1269I | GAATGC | 1 cut(s) | 1096 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1409 |
| NcoI | CCATGG | 1 cut(s) | 1298 |
| NdeI | CATATG | 3 cut(s) | 525, 718, 1207 |
| NdeII | GATC | 7 cut(s) | 358, 493, 573, 1118, 1218, 1260, 1305 |
| NlaIII | CATG | 7 cut(s) | 135, 251, 370, 1001, 1237, 1302, 1451 |
| NlaIV | GGNNCC | 1 cut(s) | 646 |
| NsiI | ATGCAT | 2 cut(s) | 718, 1363 |
| NspI | RCATGY | 1 cut(s) | 251 |
| NspV | TTCGAA | 1 cut(s) | 1068 |
| PceI | AGGCCT | 1 cut(s) | 1519 |
| PctI | GAATGC | 1 cut(s) | 1096 |
| PdmI | GAANNNNTTC | 1 cut(s) | 343 |
| PfeI | GAWTC | 5 cut(s) | 446, 578, 1324, 1429, 1441 |
| PkrI | GCNGC | 1 cut(s) | 1486 |
| PleI | GAGTC | 1 cut(s) | 55 |
| PpsI | GAGTC | 1 cut(s) | 55 |
| PshBI | ATTAAT | 1 cut(s) | 857 |
| PsiI | TTATAA | 1 cut(s) | 1044 |
| PspN4I | GGNNCC | 1 cut(s) | 646 |
| PspPI | GGNCC | 2 cut(s) | 4, 645 |
| PstI | CTGCAG | 1 cut(s) | 905 |
| PvuII | CAGCTG | 1 cut(s) | 779 |
| RsaI | GTAC | 5 cut(s) | 252, 668, 899, 1204, 1378 |
| RsaNI | GTAC | 5 cut(s) | 251, 667, 898, 1203, 1377 |
| RseI | CAYNNNNRTG | 1 cut(s) | 130 |
| SaqAI | TTAA | 4 cut(s) | 834, 857, 1314, 1502 |
| SatI | GCNGC | 1 cut(s) | 1485 |
| Sau3AI | GATC | 7 cut(s) | 358, 493, 573, 1118, 1218, 1260, 1305 |
| Sau96I | GGNCC | 2 cut(s) | 4, 645 |
| SchI | GAGTC | 1 cut(s) | 55 |
| SfaNI | GCATC | 5 cut(s) | 12, 703, 972, 1138, 1348 |
| SfcI | CTRYAG | 1 cut(s) | 901 |
| SfuI | TTCGAA | 1 cut(s) | 1068 |
| SinI | GGWCC | 2 cut(s) | 4, 645 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 130 |
| Sse9I | AATT | 9 cut(s) | 231, 270, 303, 565, 670, 1059, 1169, 1264, 1503 |
| SseBI | AGGCCT | 1 cut(s) | 1519 |
| SsiI | CCGC | 1 cut(s) | 1484 |
| SspMI | CTAG | 4 cut(s) | 141, 288, 1200, 1460 |
| StuI | AGGCCT | 1 cut(s) | 1519 |
| StyI | CCWWGG | 1 cut(s) | 1298 |
| TaaI | ACNGT | 3 cut(s) | 482, 658, 1161 |
| TaqI | TCGA | 3 cut(s) | 576, 1068, 1124 |
| TasI | AATT | 9 cut(s) | 231, 270, 303, 565, 670, 1059, 1169, 1264, 1503 |
| TatI | WGTACW | 3 cut(s) | 250, 666, 1202 |
| TauI | GCSGC | 1 cut(s) | 1487 |
| TfiI | GAWTC | 5 cut(s) | 446, 578, 1324, 1429, 1441 |
| Tru1I | TTAA | 4 cut(s) | 834, 857, 1314, 1502 |
| Tru9I | TTAA | 4 cut(s) | 834, 857, 1314, 1502 |
| TscAI | CASTG | 2 cut(s) | 661, 1290 |
| TspRI | CASTG | 2 cut(s) | 661, 1290 |
| VpaK11BI | GGWCC | 2 cut(s) | 4, 645 |
| VspI | ATTAAT | 1 cut(s) | 857 |
| XapI | RAATTY | 2 cut(s) | 303, 565 |
| XceI | RCATGY | 1 cut(s) | 251 |
| XmnI | GAANNNNTTC | 1 cut(s) | 343 |
| XspI | CTAG | 4 cut(s) | 141, 288, 1200, 1460 |
| Zsp2I | ATGCAT | 2 cut(s) | 718, 1363 |