ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 19, 616 |
| AccI | GTMKAC | 1 cut(s) | 335 |
| AccII | CGCG | 2 cut(s) | 91, 124 |
| AciI | CCGC | 3 cut(s) | 72, 89, 131 |
| AcsI | RAATTY | 1 cut(s) | 346 |
| AcuI | CTGAAG | 1 cut(s) | 521 |
| AfaI | GTAC | 1 cut(s) | 385 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 253, 393 |
| AgeI | ACCGGT | 1 cut(s) | 141 |
| AgsI | TTSAA | 4 cut(s) | 211, 323, 517, 641 |
| AjnI | CCWGG | 2 cut(s) | 79, 338 |
| AluBI | AGCT | 3 cut(s) | 287, 477, 563 |
| AluI | AGCT | 3 cut(s) | 287, 477, 563 |
| Alw26I | GTCTC | 2 cut(s) | 165, 490 |
| Ama87I | CYCGRG | 1 cut(s) | 417 |
| AoxI | GGCC | 2 cut(s) | 76, 244 |
| ApeKI | GCWGC | 1 cut(s) | 424 |
| ApoI | RAATTY | 1 cut(s) | 346 |
| AsiGI | ACCGGT | 1 cut(s) | 141 |
| AspLEI | GCGC | 2 cut(s) | 99, 124 |
| AspS9I | GGNCC | 5 cut(s) | 36, 77, 139, 245, 592 |
| AvaI | CYCGRG | 1 cut(s) | 417 |
| AvaII | GGWCC | 3 cut(s) | 36, 139, 592 |
| BbvI | GCAGC | 1 cut(s) | 436 |
| BccI | CCATC | 2 cut(s) | 236, 565 |
| BceAI | ACGGC | 1 cut(s) | 144 |
| BciT130I | CCWGG | 2 cut(s) | 81, 340 |
| BciVI | GTATCC | 1 cut(s) | 172 |
| BcoDI | GTCTC | 2 cut(s) | 165, 490 |
| BfaI | CTAG | 1 cut(s) | 135 |
| BfmI | CTRYAG | 1 cut(s) | 467 |
| BfoI | RGCGCY | 1 cut(s) | 100 |
| BfuAI | ACCTGC | 2 cut(s) | 19, 616 |
| BfuI | GTATCC | 1 cut(s) | 172 |
| BglII | AGATCT | 1 cut(s) | 301 |
| BisI | GCNGC | 2 cut(s) | 132, 425 |
| BlsI | GCNGC | 2 cut(s) | 133, 426 |
| Bme1390I | CCNGG | 2 cut(s) | 81, 340 |
| Bme18I | GGWCC | 3 cut(s) | 36, 139, 592 |
| BmeT110I | CYCGRG | 1 cut(s) | 417 |
| BmgT120I | GGNCC | 5 cut(s) | 36, 77, 139, 245, 592 |
| BmiI | GGNNCC | 2 cut(s) | 87, 140 |
| BmrFI | CCNGG | 2 cut(s) | 81, 340 |
| BmsI | GCATC | 1 cut(s) | 436 |
| Bsa29I | ATCGAT | 2 cut(s) | 57, 677 |
| BsaI | GGTCTC | 1 cut(s) | 490 |
| BsaJI | CCNNGG | 3 cut(s) | 79, 80, 188 |
| BsaWI | WCCGGW | 1 cut(s) | 141 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 253, 393 |
| Bse118I | RCCGGY | 1 cut(s) | 141 |
| BseBI | CCWGG | 2 cut(s) | 81, 340 |
| BseCI | ATCGAT | 2 cut(s) | 57, 677 |
| BseDI | CCNNGG | 3 cut(s) | 79, 80, 188 |
| BseGI | GGATG | 1 cut(s) | 247 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 253, 393 |
| BseXI | GCAGC | 1 cut(s) | 436 |
| BsgI | GTGCAG | 2 cut(s) | 47, 443 |
| Bsh1236I | CGCG | 2 cut(s) | 91, 124 |
| BshFI | GGCC | 2 cut(s) | 78, 246 |
| BshTI | ACCGGT | 1 cut(s) | 141 |
| BshVI | ATCGAT | 2 cut(s) | 57, 677 |
| BsiHKCI | CYCGRG | 1 cut(s) | 417 |
| BsiSI | CCGG | 1 cut(s) | 142 |
| BslFI | GGGAC | 1 cut(s) | 152 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 253, 393 |
| BsmAI | GTCTC | 2 cut(s) | 165, 490 |
| BsmFI | GGGAC | 1 cut(s) | 152 |
| BsnI | GGCC | 2 cut(s) | 78, 246 |
| Bso31I | GGTCTC | 1 cut(s) | 490 |
| BsoBI | CYCGRG | 1 cut(s) | 417 |
| Bsp143I | GATC | 3 cut(s) | 58, 163, 301 |
| BspACI | CCGC | 3 cut(s) | 72, 89, 131 |
| BspANI | GGCC | 2 cut(s) | 78, 246 |
| BspDI | ATCGAT | 2 cut(s) | 57, 677 |
| BspFNI | CGCG | 2 cut(s) | 91, 124 |
| BspLI | GGNNCC | 2 cut(s) | 87, 140 |
| BspMI | ACCTGC | 2 cut(s) | 19, 616 |
| BspTNI | GGTCTC | 1 cut(s) | 490 |
| BsrFI | RCCGGY | 1 cut(s) | 141 |
| BssAI | RCCGGY | 1 cut(s) | 141 |
| BssECI | CCNNGG | 3 cut(s) | 79, 80, 188 |
| BssMI | GATC | 3 cut(s) | 58, 163, 301 |
| BssT1I | CCWWGG | 1 cut(s) | 188 |
| Bst2UI | CCWGG | 2 cut(s) | 81, 340 |
| Bst4CI | ACNGT | 1 cut(s) | 230 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 157 |
| BstC8I | GCNNGC | 1 cut(s) | 475 |
| BstDEI | CTNAG | 3 cut(s) | 251, 362, 579 |
| BstF5I | GGATG | 1 cut(s) | 247 |
| BstFNI | CGCG | 2 cut(s) | 91, 124 |
| BstH2I | RGCGCY | 1 cut(s) | 100 |
| BstHHI | GCGC | 2 cut(s) | 99, 124 |
| BstKTI | GATC | 3 cut(s) | 61, 166, 304 |
| BstMAI | GTCTC | 2 cut(s) | 165, 490 |
| BstMBI | GATC | 3 cut(s) | 58, 163, 301 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 128, 157 |
| BstNI | CCWGG | 2 cut(s) | 81, 340 |
| BstSCI | CCNGG | 2 cut(s) | 79, 338 |
| BstSFI | CTRYAG | 1 cut(s) | 467 |
| BstUI | CGCG | 2 cut(s) | 91, 124 |
| BstV1I | GCAGC | 1 cut(s) | 436 |
| BstX2I | RGATCY | 1 cut(s) | 301 |
| BstYI | RGATCY | 1 cut(s) | 301 |
| Bsu15I | ATCGAT | 2 cut(s) | 57, 677 |
| BsuI | GTATCC | 1 cut(s) | 172 |
| BsuRI | GGCC | 2 cut(s) | 78, 246 |
| BsuTUI | ATCGAT | 2 cut(s) | 57, 677 |
| BtsCI | GGATG | 1 cut(s) | 247 |
| BtsI | GCAGTG | 1 cut(s) | 182 |
| BtsIMutI | CAGTG | 2 cut(s) | 182, 235 |
| BveI | ACCTGC | 2 cut(s) | 19, 616 |
| Cac8I | GCNNGC | 1 cut(s) | 475 |
| CfoI | GCGC | 2 cut(s) | 99, 124 |
| Cfr10I | RCCGGY | 1 cut(s) | 141 |
| Cfr13I | GGNCC | 5 cut(s) | 36, 77, 139, 245, 592 |
| ClaI | ATCGAT | 2 cut(s) | 57, 677 |
| CsiI | ACCWGGT | 1 cut(s) | 338 |
| Csp6I | GTAC | 1 cut(s) | 384 |
| CspAI | ACCGGT | 1 cut(s) | 141 |
| CviAII | CATG | 4 cut(s) | 147, 413, 452, 542 |
| CviQI | GTAC | 1 cut(s) | 384 |
| DdeI | CTNAG | 3 cut(s) | 251, 362, 579 |
| DpnI | GATC | 3 cut(s) | 60, 165, 303 |
| DpnII | GATC | 3 cut(s) | 58, 163, 301 |
| Eco130I | CCWWGG | 1 cut(s) | 188 |
| Eco31I | GGTCTC | 1 cut(s) | 490 |
| Eco47I | GGWCC | 3 cut(s) | 36, 139, 592 |
| Eco57I | CTGAAG | 1 cut(s) | 521 |
| Eco88I | CYCGRG | 1 cut(s) | 417 |
| EcoRI | GAATTC | 1 cut(s) | 346 |
| EcoRII | CCWGG | 2 cut(s) | 79, 338 |
| EcoT14I | CCWWGG | 1 cut(s) | 188 |
| ErhI | CCWWGG | 1 cut(s) | 188 |
| FaeI | CATG | 4 cut(s) | 150, 416, 455, 545 |
| FaqI | GGGAC | 1 cut(s) | 152 |
| FatI | CATG | 4 cut(s) | 146, 412, 451, 541 |
| FauNDI | CATATG | 1 cut(s) | 267 |
| FblI | GTMKAC | 1 cut(s) | 335 |
| Fnu4HI | GCNGC | 2 cut(s) | 132, 425 |
| FokI | GGATG | 1 cut(s) | 254 |
| Fsp4HI | GCNGC | 2 cut(s) | 132, 425 |
| FspBI | CTAG | 1 cut(s) | 135 |
| GlaI | GCGC | 2 cut(s) | 98, 123 |
| GluI | GCNGC | 2 cut(s) | 132, 425 |
| HaeII | RGCGCY | 1 cut(s) | 100 |
| HaeIII | GGCC | 2 cut(s) | 78, 246 |
| HapII | CCGG | 1 cut(s) | 142 |
| HhaI | GCGC | 2 cut(s) | 99, 124 |
| Hin1II | CATG | 4 cut(s) | 150, 416, 455, 545 |
| Hin6I | GCGC | 2 cut(s) | 97, 122 |
| HinP1I | GCGC | 2 cut(s) | 97, 122 |
| HincII | GTYRAC | 1 cut(s) | 647 |
| HindII | GTYRAC | 1 cut(s) | 647 |
| HindIII | AAGCTT | 1 cut(s) | 285 |
| HinfI | GANTC | 2 cut(s) | 108, 626 |
| HpaII | CCGG | 1 cut(s) | 142 |
| Hpy166II | GTNNAC | 3 cut(s) | 336, 592, 647 |
| Hpy188I | TCNGA | 5 cut(s) | 13, 36, 352, 438, 448 |
| Hpy188III | TCNNGA | 2 cut(s) | 62, 308 |
| Hpy8I | GTNNAC | 3 cut(s) | 336, 592, 647 |
| HpyAV | CCTTC | 2 cut(s) | 49, 229 |
| HpyCH4III | ACNGT | 1 cut(s) | 230 |
| HpyCH4V | TGCA | 3 cut(s) | 28, 424, 611 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 128, 157 |
| HpyF3I | CTNAG | 3 cut(s) | 251, 362, 579 |
| Hsp92II | CATG | 4 cut(s) | 150, 416, 455, 545 |
| HspAI | GCGC | 2 cut(s) | 97, 122 |
| Kzo9I | GATC | 3 cut(s) | 58, 163, 301 |
| Lsp1109I | GCAGC | 1 cut(s) | 436 |
| LweI | GCATC | 1 cut(s) | 436 |
| MabI | ACCWGGT | 1 cut(s) | 338 |
| MaeI | CTAG | 1 cut(s) | 135 |
| MaeIII | GTNAC | 1 cut(s) | 440 |
| MalI | GATC | 3 cut(s) | 60, 165, 303 |
| MboI | GATC | 3 cut(s) | 58, 163, 301 |
| MboII | GAAGA | 2 cut(s) | 296, 422 |
| MflI | RGATCY | 1 cut(s) | 301 |
| MluCI | AATT | 3 cut(s) | 152, 346, 612 |
| MlyI | GAGTC | 1 cut(s) | 620 |
| MmeI | TCCRAC | 1 cut(s) | 348 |
| MnlI | CCTC | 4 cut(s) | 258, 266, 444, 517 |
| MseI | TTAA | 1 cut(s) | 221 |
| MspI | CCGG | 1 cut(s) | 142 |
| MspR9I | CCNGG | 2 cut(s) | 81, 340 |
| MvaI | CCWGG | 2 cut(s) | 81, 340 |
| MvnI | CGCG | 2 cut(s) | 91, 124 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 128, 157 |
| NdeI | CATATG | 1 cut(s) | 267 |
| NdeII | GATC | 3 cut(s) | 58, 163, 301 |
| NlaIII | CATG | 4 cut(s) | 150, 416, 455, 545 |
| NlaIV | GGNNCC | 2 cut(s) | 87, 140 |
| PasI | CCCWGGG | 1 cut(s) | 80 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 268 |
| PfeI | GAWTC | 1 cut(s) | 108 |
| PflFI | GACNNNGTC | 1 cut(s) | 17 |
| PinAI | ACCGGT | 1 cut(s) | 141 |
| PkrI | GCNGC | 2 cut(s) | 133, 426 |
| PleI | GAGTC | 1 cut(s) | 620 |
| PpsI | GAGTC | 1 cut(s) | 620 |
| Psp6I | CCWGG | 2 cut(s) | 79, 338 |
| PspGI | CCWGG | 2 cut(s) | 79, 338 |
| PspN4I | GGNNCC | 2 cut(s) | 87, 140 |
| PspPI | GGNCC | 5 cut(s) | 36, 77, 139, 245, 592 |
| PsuI | RGATCY | 1 cut(s) | 301 |
| PsyI | GACNNNGTC | 1 cut(s) | 17 |
| RsaI | GTAC | 1 cut(s) | 385 |
| RsaNI | GTAC | 1 cut(s) | 384 |
| SaqAI | TTAA | 1 cut(s) | 221 |
| SatI | GCNGC | 2 cut(s) | 132, 425 |
| Sau3AI | GATC | 3 cut(s) | 58, 163, 301 |
| Sau96I | GGNCC | 5 cut(s) | 36, 77, 139, 245, 592 |
| SchI | GAGTC | 1 cut(s) | 620 |
| ScrFI | CCNGG | 2 cut(s) | 81, 340 |
| SexAI | ACCWGGT | 1 cut(s) | 338 |
| SfaNI | GCATC | 1 cut(s) | 436 |
| SfcI | CTRYAG | 1 cut(s) | 467 |
| SinI | GGWCC | 3 cut(s) | 36, 139, 592 |
| Sse9I | AATT | 3 cut(s) | 152, 346, 612 |
| SsiI | CCGC | 3 cut(s) | 72, 89, 131 |
| SspMI | CTAG | 1 cut(s) | 135 |
| StyD4I | CCNGG | 2 cut(s) | 79, 338 |
| StyI | CCWWGG | 1 cut(s) | 188 |
| TaaI | ACNGT | 1 cut(s) | 230 |
| TaqI | TCGA | 3 cut(s) | 57, 399, 677 |
| TasI | AATT | 3 cut(s) | 152, 346, 612 |
| TauI | GCSGC | 1 cut(s) | 134 |
| TfiI | GAWTC | 1 cut(s) | 108 |
| Tru1I | TTAA | 1 cut(s) | 221 |
| Tru9I | TTAA | 1 cut(s) | 221 |
| TscAI | CASTG | 2 cut(s) | 189, 235 |
| TseI | GCWGC | 1 cut(s) | 424 |
| TspDTI | ATGAA | 3 cut(s) | 228, 494, 558 |
| TspGWI | ACGGA | 1 cut(s) | 269 |
| TspRI | CASTG | 2 cut(s) | 189, 235 |
| Tth111I | GACNNNGTC | 1 cut(s) | 17 |
| VpaK11BI | GGWCC | 3 cut(s) | 36, 139, 592 |
| XapI | RAATTY | 1 cut(s) | 346 |
| XmiI | GTMKAC | 1 cut(s) | 335 |
| XspI | CTAG | 1 cut(s) | 135 |