ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 306 |
| AciI | CCGC | 2 cut(s) | 467, 774 |
| AclWI | GGATC | 4 cut(s) | 290, 348, 421, 757 |
| AcoI | YGGCCR | 1 cut(s) | 706 |
| AcsI | RAATTY | 2 cut(s) | 6, 793 |
| AcuI | CTGAAG | 1 cut(s) | 662 |
| AcyI | GRCGYC | 1 cut(s) | 307 |
| AfaI | GTAC | 2 cut(s) | 337, 595 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 573, 679 |
| AgsI | TTSAA | 4 cut(s) | 61, 421, 533, 726 |
| AhlI | ACTAGT | 1 cut(s) | 364 |
| AjiI | CACGTC | 1 cut(s) | 664 |
| AjnI | CCWGG | 2 cut(s) | 289, 356 |
| Alw21I | GWGCWC | 1 cut(s) | 246 |
| Alw26I | GTCTC | 1 cut(s) | 101 |
| Alw44I | GTGCAC | 1 cut(s) | 242 |
| AlwI | GGATC | 4 cut(s) | 290, 348, 421, 757 |
| AoxI | GGCC | 4 cut(s) | 455, 536, 681, 706 |
| ApaLI | GTGCAC | 1 cut(s) | 242 |
| ApoI | RAATTY | 2 cut(s) | 6, 793 |
| AspA2I | CCTAGG | 2 cut(s) | 461, 539 |
| AspLEI | GCGC | 2 cut(s) | 259, 309 |
| AspS9I | GGNCC | 3 cut(s) | 287, 455, 536 |
| AsuC2I | CCSGG | 1 cut(s) | 315 |
| AsuHPI | GGTGA | 3 cut(s) | 305, 629, 709 |
| AvaII | GGWCC | 1 cut(s) | 287 |
| AvrII | CCTAGG | 2 cut(s) | 461, 539 |
| AxyI | CCTNAGG | 1 cut(s) | 87 |
| BaeGI | GKGCMC | 1 cut(s) | 246 |
| BalI | TGGCCA | 1 cut(s) | 708 |
| BanI | GGYRCC | 1 cut(s) | 306 |
| Bbv12I | GWGCWC | 1 cut(s) | 246 |
| BciT130I | CCWGG | 2 cut(s) | 291, 358 |
| BclI | TGATCA | 1 cut(s) | 658 |
| BcnI | CCSGG | 1 cut(s) | 315 |
| BcoDI | GTCTC | 1 cut(s) | 101 |
| BcuI | ACTAGT | 1 cut(s) | 364 |
| BfaI | CTAG | 5 cut(s) | 365, 462, 540, 648, 816 |
| BfoI | RGCGCY | 1 cut(s) | 310 |
| BisI | GCNGC | 1 cut(s) | 775 |
| BlnI | CCTAGG | 2 cut(s) | 461, 539 |
| BlsI | GCNGC | 1 cut(s) | 776 |
| Bme1390I | CCNGG | 3 cut(s) | 291, 315, 358 |
| Bme18I | GGWCC | 1 cut(s) | 287 |
| BmgBI | CACGTC | 1 cut(s) | 664 |
| BmgT120I | GGNCC | 3 cut(s) | 287, 455, 536 |
| BmiI | GGNNCC | 2 cut(s) | 308, 693 |
| BmrFI | CCNGG | 3 cut(s) | 291, 315, 358 |
| BmsI | GCATC | 2 cut(s) | 259, 268 |
| BpmI | CTGGAG | 1 cut(s) | 238 |
| BpuMI | CCSGG | 1 cut(s) | 315 |
| Bsa29I | ATCGAT | 1 cut(s) | 352 |
| BsaBI | GATNNNNATC | 1 cut(s) | 657 |
| BsaHI | GRCGYC | 1 cut(s) | 307 |
| BsaJI | CCNNGG | 4 cut(s) | 299, 314, 461, 539 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 573, 679 |
| Bse1I | ACTGG | 1 cut(s) | 684 |
| Bse21I | CCTNAGG | 1 cut(s) | 87 |
| Bse3DI | GCAATG | 2 cut(s) | 193, 784 |
| Bse8I | GATNNNNATC | 1 cut(s) | 657 |
| BseBI | CCWGG | 2 cut(s) | 291, 358 |
| BseCI | ATCGAT | 1 cut(s) | 352 |
| BseDI | CCNNGG | 4 cut(s) | 299, 314, 461, 539 |
| BseJI | GATNNNNATC | 1 cut(s) | 657 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 573, 679 |
| BseMI | GCAATG | 2 cut(s) | 193, 784 |
| BseMII | CTCAG | 4 cut(s) | 101, 227, 573, 586 |
| BseNI | ACTGG | 1 cut(s) | 684 |
| BseSI | GKGCMC | 1 cut(s) | 246 |
| BseYI | CCCAGC | 1 cut(s) | 197 |
| BsgI | GTGCAG | 2 cut(s) | 128, 243 |
| BshFI | GGCC | 4 cut(s) | 457, 538, 683, 708 |
| BshNI | GGYRCC | 1 cut(s) | 306 |
| BshVI | ATCGAT | 1 cut(s) | 352 |
| BsiHKAI | GWGCWC | 1 cut(s) | 246 |
| BsiSI | CCGG | 1 cut(s) | 314 |
| BslFI | GGGAC | 2 cut(s) | 222, 650 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 573, 679 |
| BsmAI | GTCTC | 1 cut(s) | 101 |
| BsmBI | CGTCTC | 1 cut(s) | 101 |
| BsmFI | GGGAC | 2 cut(s) | 222, 650 |
| BsnI | GGCC | 4 cut(s) | 457, 538, 683, 708 |
| Bsp1286I | GDGCHC | 1 cut(s) | 246 |
| Bsp1407I | TGTACA | 1 cut(s) | 335 |
| Bsp143I | GATC | 7 cut(s) | 137, 295, 349, 353, 426, 658, 762 |
| BspACI | CCGC | 2 cut(s) | 467, 774 |
| BspANI | GGCC | 4 cut(s) | 457, 538, 683, 708 |
| BspCNI | CTCAG | 4 cut(s) | 100, 228, 572, 585 |
| BspDI | ATCGAT | 1 cut(s) | 352 |
| BspLI | GGNNCC | 2 cut(s) | 308, 693 |
| BspPI | GGATC | 4 cut(s) | 290, 348, 421, 757 |
| BspT107I | GGYRCC | 1 cut(s) | 306 |
| BsrDI | GCAATG | 2 cut(s) | 193, 784 |
| BsrGI | TGTACA | 1 cut(s) | 335 |
| BsrI | ACTGG | 1 cut(s) | 684 |
| BssECI | CCNNGG | 4 cut(s) | 299, 314, 461, 539 |
| BssMI | GATC | 7 cut(s) | 137, 295, 349, 353, 426, 658, 762 |
| BssNI | GRCGYC | 1 cut(s) | 307 |
| BssT1I | CCWWGG | 2 cut(s) | 461, 539 |
| Bst2UI | CCWGG | 2 cut(s) | 291, 358 |
| Bst4CI | ACNGT | 3 cut(s) | 213, 303, 509 |
| Bst6I | CTCTTC | 1 cut(s) | 435 |
| BstACI | GRCGYC | 1 cut(s) | 307 |
| BstAUI | TGTACA | 1 cut(s) | 335 |
| BstC8I | GCNNGC | 2 cut(s) | 122, 195 |
| BstDEI | CTNAG | 7 cut(s) | 11, 87, 182, 236, 559, 572, 701 |
| BstDSI | CCRYGG | 1 cut(s) | 299 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 571, 677 |
| BstH2I | RGCGCY | 1 cut(s) | 310 |
| BstHHI | GCGC | 2 cut(s) | 259, 309 |
| BstKTI | GATC | 7 cut(s) | 140, 298, 352, 356, 429, 661, 765 |
| BstMAI | GTCTC | 1 cut(s) | 101 |
| BstMBI | GATC | 7 cut(s) | 137, 295, 349, 353, 426, 658, 762 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 783 |
| BstNI | CCWGG | 2 cut(s) | 291, 358 |
| BstSCI | CCNGG | 3 cut(s) | 289, 313, 356 |
| BstSLI | GKGCMC | 1 cut(s) | 246 |
| BstX2I | RGATCY | 1 cut(s) | 426 |
| BstYI | RGATCY | 1 cut(s) | 426 |
| Bsu15I | ATCGAT | 1 cut(s) | 352 |
| Bsu36I | CCTNAGG | 1 cut(s) | 87 |
| BsuRI | GGCC | 4 cut(s) | 457, 538, 683, 708 |
| BsuTUI | ATCGAT | 1 cut(s) | 352 |
| BtgI | CCRYGG | 1 cut(s) | 299 |
| BtrI | CACGTC | 1 cut(s) | 664 |
| BtsI | GCAGTG | 1 cut(s) | 392 |
| BtsIMutI | CAGTG | 2 cut(s) | 392, 691 |
| Cac8I | GCNNGC | 2 cut(s) | 122, 195 |
| CfoI | GCGC | 2 cut(s) | 259, 309 |
| Cfr13I | GGNCC | 3 cut(s) | 287, 455, 536 |
| ClaI | ATCGAT | 1 cut(s) | 352 |
| Csp6I | GTAC | 2 cut(s) | 336, 594 |
| CviAII | CATG | 3 cut(s) | 281, 549, 584 |
| CviQI | GTAC | 2 cut(s) | 336, 594 |
| DdeI | CTNAG | 7 cut(s) | 11, 87, 182, 236, 559, 572, 701 |
| DinI | GGCGCC | 1 cut(s) | 308 |
| DpnI | GATC | 7 cut(s) | 139, 297, 351, 355, 428, 660, 764 |
| DpnII | GATC | 7 cut(s) | 137, 295, 349, 353, 426, 658, 762 |
| EaeI | YGGCCR | 1 cut(s) | 706 |
| Eam1104I | CTCTTC | 1 cut(s) | 435 |
| EarI | CTCTTC | 1 cut(s) | 435 |
| EciI | GGCGGA | 1 cut(s) | 482 |
| Eco130I | CCWWGG | 2 cut(s) | 461, 539 |
| Eco47I | GGWCC | 1 cut(s) | 287 |
| Eco57I | CTGAAG | 1 cut(s) | 662 |
| Eco81I | CCTNAGG | 1 cut(s) | 87 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 571, 677 |
| EcoO109I | RGGNCCY | 2 cut(s) | 287, 536 |
| EcoRII | CCWGG | 2 cut(s) | 289, 356 |
| EcoT14I | CCWWGG | 2 cut(s) | 461, 539 |
| EgeI | GGCGCC | 1 cut(s) | 308 |
| EheI | GGCGCC | 1 cut(s) | 308 |
| ErhI | CCWWGG | 2 cut(s) | 461, 539 |
| Esp3I | CGTCTC | 1 cut(s) | 101 |
| FaeI | CATG | 3 cut(s) | 284, 552, 587 |
| FaiI | YATR | 7 cut(s) | 103, 282, 324, 330, 550, 585, 811 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 165, 197 |
| FaqI | GGGAC | 2 cut(s) | 222, 650 |
| FatI | CATG | 3 cut(s) | 280, 548, 583 |
| FbaI | TGATCA | 1 cut(s) | 658 |
| Fnu4HI | GCNGC | 1 cut(s) | 775 |
| Fsp4HI | GCNGC | 1 cut(s) | 775 |
| FspBI | CTAG | 5 cut(s) | 365, 462, 540, 648, 816 |
| GlaI | GCGC | 2 cut(s) | 258, 308 |
| GluI | GCNGC | 1 cut(s) | 775 |
| GsaI | CCCAGC | 1 cut(s) | 201 |
| GsuI | CTGGAG | 1 cut(s) | 238 |
| HaeII | RGCGCY | 1 cut(s) | 310 |
| HaeIII | GGCC | 4 cut(s) | 457, 538, 683, 708 |
| HapII | CCGG | 1 cut(s) | 314 |
| HhaI | GCGC | 2 cut(s) | 259, 309 |
| Hin1I | GRCGYC | 1 cut(s) | 307 |
| Hin1II | CATG | 3 cut(s) | 284, 552, 587 |
| Hin6I | GCGC | 2 cut(s) | 257, 307 |
| HinP1I | GCGC | 2 cut(s) | 257, 307 |
| HinfI | GANTC | 3 cut(s) | 389, 653, 733 |
| HpaII | CCGG | 1 cut(s) | 314 |
| HphI | GGTGA | 3 cut(s) | 305, 629, 709 |
| Hpy166II | GTNNAC | 1 cut(s) | 244 |
| Hpy188I | TCNGA | 4 cut(s) | 237, 562, 620, 658 |
| Hpy188III | TCNNGA | 4 cut(s) | 163, 217, 491, 754 |
| Hpy8I | GTNNAC | 1 cut(s) | 244 |
| Hpy99I | CGWCG | 1 cut(s) | 455 |
| HpyAV | CCTTC | 3 cut(s) | 55, 609, 686 |
| HpyCH4III | ACNGT | 3 cut(s) | 213, 303, 509 |
| HpyCH4IV | ACGT | 1 cut(s) | 663 |
| HpyCH4V | TGCA | 6 cut(s) | 24, 36, 74, 145, 224, 244 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 783 |
| HpyF3I | CTNAG | 7 cut(s) | 11, 87, 182, 236, 559, 572, 701 |
| HpySE526I | ACGT | 1 cut(s) | 663 |
| Hsp92I | GRCGYC | 1 cut(s) | 307 |
| Hsp92II | CATG | 3 cut(s) | 284, 552, 587 |
| HspAI | GCGC | 2 cut(s) | 257, 307 |
| KasI | GGCGCC | 1 cut(s) | 306 |
| Ksp22I | TGATCA | 1 cut(s) | 658 |
| Kzo9I | GATC | 7 cut(s) | 137, 295, 349, 353, 426, 658, 762 |
| LweI | GCATC | 2 cut(s) | 259, 268 |
| MaeI | CTAG | 5 cut(s) | 365, 462, 540, 648, 816 |
| MaeII | ACGT | 1 cut(s) | 663 |
| MaeIII | GTNAC | 2 cut(s) | 631, 743 |
| MalI | GATC | 7 cut(s) | 139, 297, 351, 355, 428, 660, 764 |
| MboI | GATC | 7 cut(s) | 137, 295, 349, 353, 426, 658, 762 |
| MboII | GAAGA | 2 cut(s) | 124, 452 |
| MfeI | CAATTG | 1 cut(s) | 767 |
| MflI | RGATCY | 1 cut(s) | 426 |
| MhlI | GDGCHC | 1 cut(s) | 246 |
| MlsI | TGGCCA | 1 cut(s) | 708 |
| MluCI | AATT | 5 cut(s) | 6, 19, 251, 767, 793 |
| MluNI | TGGCCA | 1 cut(s) | 708 |
| Mly113I | GGCGCC | 1 cut(s) | 307 |
| MlyI | GAGTC | 1 cut(s) | 742 |
| Mox20I | TGGCCA | 1 cut(s) | 708 |
| MscI | TGGCCA | 1 cut(s) | 708 |
| MseI | TTAA | 1 cut(s) | 432 |
| MslI | CAYNNNNRTG | 1 cut(s) | 267 |
| Msp20I | TGGCCA | 1 cut(s) | 708 |
| MspI | CCGG | 1 cut(s) | 314 |
| MspR9I | CCNGG | 3 cut(s) | 291, 315, 358 |
| MunI | CAATTG | 1 cut(s) | 767 |
| MvaI | CCWGG | 2 cut(s) | 291, 358 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 783 |
| NarI | GGCGCC | 1 cut(s) | 307 |
| NciI | CCSGG | 1 cut(s) | 315 |
| NdeII | GATC | 7 cut(s) | 137, 295, 349, 353, 426, 658, 762 |
| NlaIII | CATG | 3 cut(s) | 284, 552, 587 |
| NlaIV | GGNNCC | 2 cut(s) | 308, 693 |
| NmuCI | GTSAC | 1 cut(s) | 631 |
| PfeI | GAWTC | 2 cut(s) | 389, 653 |
| PfoI | TCCNGGA | 1 cut(s) | 356 |
| PkrI | GCNGC | 1 cut(s) | 776 |
| PleI | GAGTC | 1 cut(s) | 741 |
| PluTI | GGCGCC | 1 cut(s) | 310 |
| PpsI | GAGTC | 1 cut(s) | 741 |
| PpuMI | RGGWCCY | 1 cut(s) | 287 |
| Psp5II | RGGWCCY | 1 cut(s) | 287 |
| Psp6I | CCWGG | 2 cut(s) | 289, 356 |
| PspFI | CCCAGC | 1 cut(s) | 197 |
| PspGI | CCWGG | 2 cut(s) | 289, 356 |
| PspN4I | GGNNCC | 2 cut(s) | 308, 693 |
| PspPI | GGNCC | 3 cut(s) | 287, 455, 536 |
| PspPPI | RGGWCCY | 1 cut(s) | 287 |
| PsuI | RGATCY | 1 cut(s) | 426 |
| RsaI | GTAC | 2 cut(s) | 337, 595 |
| RsaNI | GTAC | 2 cut(s) | 336, 594 |
| RseI | CAYNNNNRTG | 1 cut(s) | 267 |
| SaqAI | TTAA | 1 cut(s) | 432 |
| SatI | GCNGC | 1 cut(s) | 775 |
| Sau3AI | GATC | 7 cut(s) | 137, 295, 349, 353, 426, 658, 762 |
| Sau96I | GGNCC | 3 cut(s) | 287, 455, 536 |
| SchI | GAGTC | 1 cut(s) | 742 |
| ScrFI | CCNGG | 3 cut(s) | 291, 315, 358 |
| SduI | GDGCHC | 1 cut(s) | 246 |
| SfaNI | GCATC | 2 cut(s) | 259, 268 |
| SfoI | GGCGCC | 1 cut(s) | 308 |
| SinI | GGWCC | 1 cut(s) | 287 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 267 |
| SpeI | ACTAGT | 1 cut(s) | 364 |
| Sse9I | AATT | 5 cut(s) | 6, 19, 251, 767, 793 |
| SsiI | CCGC | 2 cut(s) | 467, 774 |
| SspDI | GGCGCC | 1 cut(s) | 306 |
| SspMI | CTAG | 5 cut(s) | 365, 462, 540, 648, 816 |
| StyD4I | CCNGG | 3 cut(s) | 289, 313, 356 |
| StyI | CCWWGG | 2 cut(s) | 461, 539 |
| TaaI | ACNGT | 3 cut(s) | 213, 303, 509 |
| TaiI | ACGT | 1 cut(s) | 666 |
| TaqI | TCGA | 4 cut(s) | 136, 352, 411, 450 |
| TasI | AATT | 5 cut(s) | 6, 19, 251, 767, 793 |
| TatI | WGTACW | 2 cut(s) | 335, 593 |
| TauI | GCSGC | 1 cut(s) | 777 |
| TfiI | GAWTC | 2 cut(s) | 389, 653 |
| Tru1I | TTAA | 1 cut(s) | 432 |
| Tru9I | TTAA | 1 cut(s) | 432 |
| TscAI | CASTG | 2 cut(s) | 399, 691 |
| TseFI | GTSAC | 1 cut(s) | 631 |
| Tsp45I | GTSAC | 1 cut(s) | 631 |
| TspDTI | ATGAA | 3 cut(s) | 17, 269, 453 |
| TspRI | CASTG | 2 cut(s) | 399, 691 |
| VneI | GTGCAC | 1 cut(s) | 242 |
| VpaK11BI | GGWCC | 1 cut(s) | 287 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 571, 677 |
| XapI | RAATTY | 2 cut(s) | 6, 793 |
| XmaJI | CCTAGG | 2 cut(s) | 461, 539 |
| XspI | CTAG | 5 cut(s) | 365, 462, 540, 648, 816 |