ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 172 |
| Acc65I | GGTACC | 1 cut(s) | 880 |
| AccB1I | GGYRCC | 1 cut(s) | 880 |
| AccI | GTMKAC | 2 cut(s) | 488, 931 |
| AciI | CCGC | 1 cut(s) | 530 |
| AclWI | GGATC | 3 cut(s) | 233, 462, 531 |
| AcsI | RAATTY | 3 cut(s) | 369, 499, 671 |
| AcuI | CTGAAG | 1 cut(s) | 674 |
| AfaI | GTAC | 2 cut(s) | 551, 882 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 328, 546 |
| AgsI | TTSAA | 3 cut(s) | 364, 476, 670 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 800 |
| AjiI | CACGTC | 1 cut(s) | 656 |
| AluBI | AGCT | 1 cut(s) | 871 |
| AluI | AGCT | 1 cut(s) | 871 |
| Alw21I | GWGCWC | 3 cut(s) | 571, 783, 901 |
| Alw26I | GTCTC | 7 cut(s) | 44, 309, 409, 500, 591, 805, 961 |
| AlwI | GGATC | 3 cut(s) | 233, 462, 531 |
| Ama87I | CYCGRG | 1 cut(s) | 570 |
| AoxI | GGCC | 1 cut(s) | 198 |
| ApeKI | GCWGC | 2 cut(s) | 619, 747 |
| ApoI | RAATTY | 3 cut(s) | 369, 499, 671 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 193 |
| Asp718I | GGTACC | 1 cut(s) | 880 |
| AspA2I | CCTAGG | 1 cut(s) | 442 |
| AspS9I | GGNCC | 3 cut(s) | 199, 230, 398 |
| AsuC2I | CCSGG | 1 cut(s) | 234 |
| AsuHPI | GGTGA | 1 cut(s) | 710 |
| AsuII | TTCGAA | 2 cut(s) | 187, 675 |
| AvaI | CYCGRG | 1 cut(s) | 570 |
| AvaII | GGWCC | 2 cut(s) | 230, 398 |
| AvrII | CCTAGG | 1 cut(s) | 442 |
| BanI | GGYRCC | 1 cut(s) | 880 |
| Bbv12I | GWGCWC | 3 cut(s) | 571, 783, 901 |
| BbvI | GCAGC | 2 cut(s) | 606, 759 |
| BccI | CCATC | 4 cut(s) | 389, 701, 886, 916 |
| BceAI | ACGGC | 1 cut(s) | 297 |
| BciVI | GTATCC | 1 cut(s) | 282 |
| BcnI | CCSGG | 1 cut(s) | 234 |
| BcoDI | GTCTC | 7 cut(s) | 44, 309, 409, 500, 591, 805, 961 |
| BfaI | CTAG | 4 cut(s) | 443, 467, 627, 845 |
| BfmI | CTRYAG | 2 cut(s) | 620, 932 |
| BfuAI | ACCTGC | 1 cut(s) | 172 |
| BfuI | GTATCC | 1 cut(s) | 282 |
| BisI | GCNGC | 2 cut(s) | 620, 748 |
| BlnI | CCTAGG | 1 cut(s) | 442 |
| BlsI | GCNGC | 2 cut(s) | 621, 749 |
| Bme1390I | CCNGG | 1 cut(s) | 234 |
| Bme18I | GGWCC | 2 cut(s) | 230, 398 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 800 |
| BmeT110I | CYCGRG | 1 cut(s) | 570 |
| BmgBI | CACGTC | 1 cut(s) | 656 |
| BmgT120I | GGNCC | 3 cut(s) | 199, 230, 398 |
| BmiI | GGNNCC | 1 cut(s) | 882 |
| BmrFI | CCNGG | 1 cut(s) | 234 |
| BmrI | ACTGGG | 1 cut(s) | 267 |
| BmsI | GCATC | 3 cut(s) | 97, 670, 831 |
| BmuI | ACTGGG | 1 cut(s) | 267 |
| BoxI | GACNNNNGTC | 1 cut(s) | 583 |
| BpmI | CTGGAG | 2 cut(s) | 236, 884 |
| Bpu14I | TTCGAA | 2 cut(s) | 187, 675 |
| BpuMI | CCSGG | 1 cut(s) | 234 |
| BsaBI | GATNNNNATC | 2 cut(s) | 87, 600 |
| BsaI | GGTCTC | 1 cut(s) | 309 |
| BsaJI | CCNNGG | 3 cut(s) | 242, 341, 442 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 857, 887 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 328, 546 |
| Bse1I | ACTGG | 2 cut(s) | 262, 748 |
| Bse8I | GATNNNNATC | 2 cut(s) | 87, 600 |
| BseDI | CCNNGG | 3 cut(s) | 242, 341, 442 |
| BseGI | GGATG | 2 cut(s) | 159, 400 |
| BseJI | GATNNNNATC | 2 cut(s) | 87, 600 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 328, 546 |
| BseMII | CTCAG | 4 cut(s) | 44, 325, 495, 529 |
| BseNI | ACTGG | 2 cut(s) | 262, 748 |
| BseRI | GAGGAG | 1 cut(s) | 881 |
| BseXI | GCAGC | 2 cut(s) | 606, 759 |
| BsgI | GTGCAG | 3 cut(s) | 200, 520, 651 |
| BshFI | GGCC | 1 cut(s) | 200 |
| BshNI | GGYRCC | 1 cut(s) | 880 |
| BsiHKAI | GWGCWC | 3 cut(s) | 571, 783, 901 |
| BsiHKCI | CYCGRG | 1 cut(s) | 570 |
| BsiSI | CCGG | 1 cut(s) | 233 |
| BslFI | GGGAC | 1 cut(s) | 593 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 328, 546 |
| BsmAI | GTCTC | 7 cut(s) | 44, 309, 409, 500, 591, 805, 961 |
| BsmFI | GGGAC | 1 cut(s) | 593 |
| BsnI | GGCC | 1 cut(s) | 200 |
| Bso31I | GGTCTC | 1 cut(s) | 309 |
| BsoBI | CYCGRG | 1 cut(s) | 570 |
| Bsp119I | TTCGAA | 2 cut(s) | 187, 675 |
| Bsp1286I | GDGCHC | 3 cut(s) | 571, 783, 901 |
| BspACI | CCGC | 1 cut(s) | 530 |
| BspANI | GGCC | 1 cut(s) | 200 |
| BspCNI | CTCAG | 4 cut(s) | 43, 324, 496, 528 |
| BspLI | GGNNCC | 1 cut(s) | 882 |
| BspMAI | CTGCAG | 1 cut(s) | 624 |
| BspMI | ACCTGC | 1 cut(s) | 172 |
| BspPI | GGATC | 3 cut(s) | 233, 462, 531 |
| BspT104I | TTCGAA | 2 cut(s) | 187, 675 |
| BspT107I | GGYRCC | 1 cut(s) | 880 |
| BspTNI | GGTCTC | 1 cut(s) | 309 |
| BsrI | ACTGG | 2 cut(s) | 262, 748 |
| BssECI | CCNNGG | 3 cut(s) | 242, 341, 442 |
| BssT1I | CCWWGG | 2 cut(s) | 341, 442 |
| Bst4CI | ACNGT | 1 cut(s) | 936 |
| Bst6I | CTCTTC | 2 cut(s) | 713, 948 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 841 |
| BstBI | TTCGAA | 2 cut(s) | 187, 675 |
| BstC8I | GCNNGC | 2 cut(s) | 73, 624 |
| BstDEI | CTNAG | 6 cut(s) | 30, 311, 404, 504, 515, 987 |
| BstF5I | GGATG | 2 cut(s) | 159, 400 |
| BstMAI | GTCTC | 7 cut(s) | 44, 309, 409, 500, 591, 805, 961 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 72, 841 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 583 |
| BstSCI | CCNGG | 1 cut(s) | 232 |
| BstSFI | CTRYAG | 2 cut(s) | 620, 932 |
| BstV1I | GCAGC | 2 cut(s) | 606, 759 |
| BstX2I | RGATCY | 2 cut(s) | 238, 454 |
| BstYI | RGATCY | 2 cut(s) | 238, 454 |
| BsuI | GTATCC | 1 cut(s) | 282 |
| BsuRI | GGCC | 1 cut(s) | 200 |
| BtgZI | GCGATG | 1 cut(s) | 647 |
| BtrI | CACGTC | 1 cut(s) | 656 |
| BtsCI | GGATG | 2 cut(s) | 159, 400 |
| BveI | ACCTGC | 1 cut(s) | 172 |
| Cac8I | GCNNGC | 2 cut(s) | 73, 624 |
| Cfr13I | GGNCC | 3 cut(s) | 199, 230, 398 |
| Csp6I | GTAC | 2 cut(s) | 550, 881 |
| CviAII | CATG | 4 cut(s) | 492, 605, 695, 726 |
| CviQI | GTAC | 2 cut(s) | 550, 881 |
| DdeI | CTNAG | 6 cut(s) | 30, 311, 404, 504, 515, 987 |
| DriI | GACNNNNNGTC | 1 cut(s) | 800 |
| Eam1104I | CTCTTC | 2 cut(s) | 713, 948 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 800 |
| EarI | CTCTTC | 2 cut(s) | 713, 948 |
| Eco130I | CCWWGG | 2 cut(s) | 341, 442 |
| Eco31I | GGTCTC | 1 cut(s) | 309 |
| Eco32I | GATATC | 1 cut(s) | 556 |
| Eco47I | GGWCC | 2 cut(s) | 230, 398 |
| Eco57I | CTGAAG | 1 cut(s) | 674 |
| Eco88I | CYCGRG | 1 cut(s) | 570 |
| EcoRI | GAATTC | 1 cut(s) | 499 |
| EcoRV | GATATC | 1 cut(s) | 556 |
| EcoT14I | CCWWGG | 2 cut(s) | 341, 442 |
| ErhI | CCWWGG | 2 cut(s) | 341, 442 |
| FaeI | CATG | 4 cut(s) | 495, 608, 698, 729 |
| FaiI | YATR | 9 cut(s) | 207, 450, 493, 606, 648, 696, 727, 755, 851 |
| FaqI | GGGAC | 1 cut(s) | 593 |
| FatI | CATG | 4 cut(s) | 491, 604, 694, 725 |
| FblI | GTMKAC | 2 cut(s) | 488, 931 |
| Fnu4HI | GCNGC | 2 cut(s) | 620, 748 |
| FokI | GGATG | 2 cut(s) | 166, 407 |
| Fsp4HI | GCNGC | 2 cut(s) | 620, 748 |
| FspBI | CTAG | 4 cut(s) | 443, 467, 627, 845 |
| GluI | GCNGC | 2 cut(s) | 620, 748 |
| GsuI | CTGGAG | 2 cut(s) | 236, 884 |
| HaeIII | GGCC | 1 cut(s) | 200 |
| HapII | CCGG | 1 cut(s) | 233 |
| Hin1II | CATG | 4 cut(s) | 495, 608, 698, 729 |
| HinfI | GANTC | 5 cut(s) | 22, 332, 513, 573, 596 |
| HpaII | CCGG | 1 cut(s) | 233 |
| HphI | GGTGA | 1 cut(s) | 710 |
| Hpy166II | GTNNAC | 2 cut(s) | 489, 932 |
| Hpy188I | TCNGA | 8 cut(s) | 21, 33, 243, 314, 505, 578, 591, 601 |
| Hpy188III | TCNNGA | 7 cut(s) | 141, 160, 215, 329, 434, 461, 863 |
| Hpy8I | GTNNAC | 2 cut(s) | 489, 932 |
| Hpy99I | CGWCG | 1 cut(s) | 660 |
| HpyCH4III | ACNGT | 1 cut(s) | 936 |
| HpyCH4IV | ACGT | 1 cut(s) | 655 |
| HpyCH4V | TGCA | 6 cut(s) | 88, 181, 537, 622, 632, 725 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 72, 841 |
| HpyF3I | CTNAG | 6 cut(s) | 30, 311, 404, 504, 515, 987 |
| HpySE526I | ACGT | 1 cut(s) | 655 |
| Hsp92II | CATG | 4 cut(s) | 495, 608, 698, 729 |
| KpnI | GGTACC | 1 cut(s) | 884 |
| LmnI | GCTCC | 1 cut(s) | 868 |
| Lsp1109I | GCAGC | 2 cut(s) | 606, 759 |
| LweI | GCATC | 3 cut(s) | 97, 670, 831 |
| MaeI | CTAG | 4 cut(s) | 443, 467, 627, 845 |
| MaeII | ACGT | 1 cut(s) | 655 |
| MaeIII | GTNAC | 1 cut(s) | 936 |
| MboII | GAAGA | 4 cut(s) | 449, 730, 922, 965 |
| MfeI | CAATTG | 1 cut(s) | 305 |
| MflI | RGATCY | 2 cut(s) | 238, 454 |
| MhlI | GDGCHC | 3 cut(s) | 571, 783, 901 |
| MluCI | AATT | 6 cut(s) | 57, 305, 369, 499, 671, 774 |
| MlyI | GAGTC | 2 cut(s) | 507, 582 |
| MmeI | TCCRAC | 2 cut(s) | 372, 601 |
| MnlI | CCTC | 8 cut(s) | 39, 112, 137, 237, 243, 329, 411, 859 |
| MroXI | GAANNNNTTC | 1 cut(s) | 193 |
| MseI | TTAA | 6 cut(s) | 11, 174, 375, 768, 798, 822 |
| MspI | CCGG | 1 cut(s) | 233 |
| MspR9I | CCNGG | 1 cut(s) | 234 |
| MunI | CAATTG | 1 cut(s) | 305 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 72, 841 |
| NciI | CCSGG | 1 cut(s) | 234 |
| NlaIII | CATG | 4 cut(s) | 495, 608, 698, 729 |
| NlaIV | GGNNCC | 1 cut(s) | 882 |
| NmuCI | GTSAC | 1 cut(s) | 936 |
| NspV | TTCGAA | 2 cut(s) | 187, 675 |
| PaeR7I | CTCGAG | 1 cut(s) | 570 |
| PdmI | GAANNNNTTC | 1 cut(s) | 193 |
| PfeI | GAWTC | 3 cut(s) | 22, 332, 596 |
| PfoI | TCCNGGA | 1 cut(s) | 232 |
| PkrI | GCNGC | 2 cut(s) | 621, 749 |
| PleI | GAGTC | 2 cut(s) | 507, 581 |
| PpsI | GAGTC | 2 cut(s) | 507, 581 |
| PshAI | GACNNNNGTC | 1 cut(s) | 583 |
| PspN4I | GGNNCC | 1 cut(s) | 882 |
| PspPI | GGNCC | 3 cut(s) | 199, 230, 398 |
| PspXI | VCTCGAGB | 1 cut(s) | 570 |
| PstI | CTGCAG | 1 cut(s) | 624 |
| PsuI | RGATCY | 2 cut(s) | 238, 454 |
| RsaI | GTAC | 2 cut(s) | 551, 882 |
| RsaNI | GTAC | 2 cut(s) | 550, 881 |
| SaqAI | TTAA | 6 cut(s) | 11, 174, 375, 768, 798, 822 |
| SatI | GCNGC | 2 cut(s) | 620, 748 |
| Sau96I | GGNCC | 3 cut(s) | 199, 230, 398 |
| SchI | GAGTC | 2 cut(s) | 507, 582 |
| ScrFI | CCNGG | 1 cut(s) | 234 |
| SduI | GDGCHC | 3 cut(s) | 571, 783, 901 |
| SetI | ASST | 9 cut(s) | 123, 186, 248, 321, 403, 658, 873, 886, 984 |
| SfaNI | GCATC | 3 cut(s) | 97, 670, 831 |
| SfcI | CTRYAG | 2 cut(s) | 620, 932 |
| Sfr274I | CTCGAG | 1 cut(s) | 570 |
| SfuI | TTCGAA | 2 cut(s) | 187, 675 |
| SinI | GGWCC | 2 cut(s) | 230, 398 |
| SlaI | CTCGAG | 1 cut(s) | 570 |
| SmlI | CTYRAG | 1 cut(s) | 570 |
| SmoI | CTYRAG | 1 cut(s) | 570 |
| Sse9I | AATT | 6 cut(s) | 57, 305, 369, 499, 671, 774 |
| SsiI | CCGC | 1 cut(s) | 530 |
| SspI | AATATT | 1 cut(s) | 615 |
| SspMI | CTAG | 4 cut(s) | 443, 467, 627, 845 |
| StyD4I | CCNGG | 1 cut(s) | 232 |
| StyI | CCWWGG | 2 cut(s) | 341, 442 |
| TaaI | ACNGT | 1 cut(s) | 936 |
| TaiI | ACGT | 1 cut(s) | 658 |
| TaqI | TCGA | 4 cut(s) | 187, 571, 675, 890 |
| TasI | AATT | 6 cut(s) | 57, 305, 369, 499, 671, 774 |
| TfiI | GAWTC | 3 cut(s) | 22, 332, 596 |
| Tru1I | TTAA | 6 cut(s) | 11, 174, 375, 768, 798, 822 |
| Tru9I | TTAA | 6 cut(s) | 11, 174, 375, 768, 798, 822 |
| TseFI | GTSAC | 1 cut(s) | 936 |
| TseI | GCWGC | 2 cut(s) | 619, 747 |
| Tsp45I | GTSAC | 1 cut(s) | 936 |
| TspDTI | ATGAA | 3 cut(s) | 17, 183, 381 |
| TspGWI | ACGGA | 2 cut(s) | 68, 311 |
| VpaK11BI | GGWCC | 2 cut(s) | 230, 398 |
| XapI | RAATTY | 3 cut(s) | 369, 499, 671 |
| XhoI | CTCGAG | 1 cut(s) | 570 |
| XmaJI | CCTAGG | 1 cut(s) | 442 |
| XmiI | GTMKAC | 2 cut(s) | 488, 931 |
| XmnI | GAANNNNTTC | 1 cut(s) | 193 |
| XspI | CTAG | 4 cut(s) | 443, 467, 627, 845 |