ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 154 |
| AccI | GTMKAC | 1 cut(s) | 509 |
| AciI | CCGC | 1 cut(s) | 349 |
| AclWI | GGATC | 1 cut(s) | 273 |
| AcsI | RAATTY | 1 cut(s) | 442 |
| AcuI | CTGAAG | 1 cut(s) | 473 |
| AfaI | GTAC | 3 cut(s) | 10, 162, 548 |
| AflII | CTTAAG | 1 cut(s) | 194 |
| AgsI | TTSAA | 4 cut(s) | 85, 377, 442, 542 |
| AjnI | CCWGG | 1 cut(s) | 562 |
| AluBI | AGCT | 5 cut(s) | 97, 181, 193, 237, 496 |
| AluI | AGCT | 5 cut(s) | 97, 181, 193, 237, 496 |
| Alw21I | GWGCWC | 1 cut(s) | 121 |
| AlwI | GGATC | 1 cut(s) | 273 |
| ApeKI | GCWGC | 1 cut(s) | 94 |
| ApoI | RAATTY | 1 cut(s) | 442 |
| AspS9I | GGNCC | 1 cut(s) | 566 |
| AsuHPI | GGTGA | 1 cut(s) | 278 |
| AvaII | GGWCC | 1 cut(s) | 566 |
| BanI | GGYRCC | 1 cut(s) | 154 |
| BbsI | GAAGAC | 1 cut(s) | 73 |
| Bbv12I | GWGCWC | 1 cut(s) | 121 |
| BbvI | GCAGC | 1 cut(s) | 106 |
| BccI | CCATC | 2 cut(s) | 157, 566 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 416, 450 |
| BciT130I | CCWGG | 1 cut(s) | 564 |
| BciVI | GTATCC | 1 cut(s) | 355 |
| BclI | TGATCA | 2 cut(s) | 384, 490 |
| BfaI | CTAG | 1 cut(s) | 48 |
| BfrI | CTTAAG | 1 cut(s) | 194 |
| BfuI | GTATCC | 1 cut(s) | 355 |
| BisI | GCNGC | 1 cut(s) | 95 |
| BlsI | GCNGC | 1 cut(s) | 96 |
| Bme1390I | CCNGG | 1 cut(s) | 564 |
| Bme18I | GGWCC | 1 cut(s) | 566 |
| BmgT120I | GGNCC | 1 cut(s) | 566 |
| BmiI | GGNNCC | 1 cut(s) | 156 |
| BmrFI | CCNGG | 1 cut(s) | 564 |
| BmsI | GCATC | 2 cut(s) | 425, 567 |
| BpiI | GAAGAC | 1 cut(s) | 73 |
| BpuEI | CTTGAG | 1 cut(s) | 239 |
| Bsa29I | ATCGAT | 1 cut(s) | 426 |
| BsaJI | CCNNGG | 2 cut(s) | 513, 562 |
| BsaWI | WCCGGW | 1 cut(s) | 288 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 206, 236 |
| Bse118I | RCCGGY | 1 cut(s) | 275 |
| BseBI | CCWGG | 1 cut(s) | 564 |
| BseCI | ATCGAT | 1 cut(s) | 426 |
| BseDI | CCNNGG | 2 cut(s) | 513, 562 |
| BseGI | GGATG | 1 cut(s) | 582 |
| BseMII | CTCAG | 2 cut(s) | 357, 491 |
| BseXI | GCAGC | 1 cut(s) | 106 |
| BshNI | GGYRCC | 1 cut(s) | 154 |
| BshVI | ATCGAT | 1 cut(s) | 426 |
| BsiHKAI | GWGCWC | 1 cut(s) | 121 |
| BsiSI | CCGG | 2 cut(s) | 276, 289 |
| Bsp1286I | GDGCHC | 1 cut(s) | 121 |
| Bsp1407I | TGTACA | 1 cut(s) | 160 |
| Bsp143I | GATC | 3 cut(s) | 265, 384, 490 |
| BspACI | CCGC | 1 cut(s) | 349 |
| BspCNI | CTCAG | 2 cut(s) | 358, 490 |
| BspDI | ATCGAT | 1 cut(s) | 426 |
| BspLI | GGNNCC | 1 cut(s) | 156 |
| BspPI | GGATC | 1 cut(s) | 273 |
| BspT107I | GGYRCC | 1 cut(s) | 154 |
| BspTI | CTTAAG | 1 cut(s) | 194 |
| BsrFI | RCCGGY | 1 cut(s) | 275 |
| BsrGI | TGTACA | 1 cut(s) | 160 |
| BssAI | RCCGGY | 1 cut(s) | 275 |
| BssECI | CCNNGG | 2 cut(s) | 513, 562 |
| BssMI | GATC | 3 cut(s) | 265, 384, 490 |
| BssNAI | GTATAC | 1 cut(s) | 510 |
| BssT1I | CCWWGG | 1 cut(s) | 513 |
| Bst1107I | GTATAC | 1 cut(s) | 510 |
| Bst2UI | CCWGG | 1 cut(s) | 564 |
| Bst6I | CTCTTC | 3 cut(s) | 123, 167, 513 |
| BstAFI | CTTAAG | 1 cut(s) | 194 |
| BstAUI | TGTACA | 1 cut(s) | 160 |
| BstC8I | GCNNGC | 1 cut(s) | 92 |
| BstDEI | CTNAG | 2 cut(s) | 366, 477 |
| BstF5I | GGATG | 1 cut(s) | 582 |
| BstKTI | GATC | 3 cut(s) | 268, 387, 493 |
| BstMBI | GATC | 3 cut(s) | 265, 384, 490 |
| BstNI | CCWGG | 1 cut(s) | 564 |
| BstSCI | CCNGG | 1 cut(s) | 562 |
| BstV1I | GCAGC | 1 cut(s) | 106 |
| BstV2I | GAAGAC | 1 cut(s) | 73 |
| BstZ17I | GTATAC | 1 cut(s) | 510 |
| Bsu15I | ATCGAT | 1 cut(s) | 426 |
| BsuI | GTATCC | 1 cut(s) | 355 |
| BsuTUI | ATCGAT | 1 cut(s) | 426 |
| BtsCI | GGATG | 1 cut(s) | 582 |
| BtsI | GCAGTG | 1 cut(s) | 387 |
| BtsIMutI | CAGTG | 1 cut(s) | 387 |
| Cac8I | GCNNGC | 1 cut(s) | 92 |
| Cfr10I | RCCGGY | 1 cut(s) | 275 |
| Cfr13I | GGNCC | 1 cut(s) | 566 |
| ClaI | ATCGAT | 1 cut(s) | 426 |
| Csp6I | GTAC | 3 cut(s) | 9, 161, 547 |
| CviAII | CATG | 1 cut(s) | 249 |
| CviJI | RGCY | 8 cut(s) | 97, 181, 193, 237, 253, 279, 458, 496 |
| CviKI_1 | RGCY | 8 cut(s) | 97, 181, 193, 237, 253, 279, 458, 496 |
| CviQI | GTAC | 3 cut(s) | 9, 161, 547 |
| DdeI | CTNAG | 2 cut(s) | 366, 477 |
| DpnI | GATC | 3 cut(s) | 267, 386, 492 |
| DpnII | GATC | 3 cut(s) | 265, 384, 490 |
| DraI | TTTAAA | 1 cut(s) | 412 |
| Eam1104I | CTCTTC | 3 cut(s) | 123, 167, 513 |
| EarI | CTCTTC | 3 cut(s) | 123, 167, 513 |
| Eco130I | CCWWGG | 1 cut(s) | 513 |
| Eco47I | GGWCC | 1 cut(s) | 566 |
| Eco57I | CTGAAG | 1 cut(s) | 473 |
| EcoRII | CCWGG | 1 cut(s) | 562 |
| EcoT14I | CCWWGG | 1 cut(s) | 513 |
| ErhI | CCWWGG | 1 cut(s) | 513 |
| FaeI | CATG | 1 cut(s) | 252 |
| FaiI | YATR | 6 cut(s) | 17, 41, 45, 250, 499, 510 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 65, 97 |
| FatI | CATG | 1 cut(s) | 248 |
| FbaI | TGATCA | 2 cut(s) | 384, 490 |
| FblI | GTMKAC | 1 cut(s) | 509 |
| Fnu4HI | GCNGC | 1 cut(s) | 95 |
| Fsp4HI | GCNGC | 1 cut(s) | 95 |
| FspBI | CTAG | 1 cut(s) | 48 |
| GluI | GCNGC | 1 cut(s) | 95 |
| HapII | CCGG | 2 cut(s) | 276, 289 |
| Hin1II | CATG | 1 cut(s) | 252 |
| HindIII | AAGCTT | 1 cut(s) | 191 |
| HinfI | GANTC | 2 cut(s) | 52, 111 |
| HpaII | CCGG | 2 cut(s) | 276, 289 |
| HphI | GGTGA | 1 cut(s) | 278 |
| Hpy166II | GTNNAC | 1 cut(s) | 510 |
| Hpy188I | TCNGA | 1 cut(s) | 421 |
| Hpy188III | TCNNGA | 3 cut(s) | 212, 479, 569 |
| Hpy8I | GTNNAC | 1 cut(s) | 510 |
| HpyAV | CCTTC | 2 cut(s) | 254, 448 |
| HpyCH4IV | ACGT | 1 cut(s) | 506 |
| HpyCH4V | TGCA | 2 cut(s) | 325, 503 |
| HpyF3I | CTNAG | 2 cut(s) | 366, 477 |
| HpySE526I | ACGT | 1 cut(s) | 506 |
| Hsp92II | CATG | 1 cut(s) | 252 |
| Ksp22I | TGATCA | 2 cut(s) | 384, 490 |
| Kzo9I | GATC | 3 cut(s) | 265, 384, 490 |
| LmnI | GCTCC | 1 cut(s) | 469 |
| Lsp1109I | GCAGC | 1 cut(s) | 106 |
| LweI | GCATC | 2 cut(s) | 425, 567 |
| MaeI | CTAG | 1 cut(s) | 48 |
| MaeII | ACGT | 1 cut(s) | 506 |
| MaeIII | GTNAC | 2 cut(s) | 132, 472 |
| MalI | GATC | 3 cut(s) | 267, 386, 492 |
| MboI | GATC | 3 cut(s) | 265, 384, 490 |
| MboII | GAAGA | 4 cut(s) | 73, 140, 184, 530 |
| MhlI | GDGCHC | 1 cut(s) | 121 |
| MluCI | AATT | 4 cut(s) | 218, 243, 372, 442 |
| MmeI | TCCRAC | 1 cut(s) | 105 |
| MnlI | CCTC | 6 cut(s) | 70, 208, 337, 352, 361, 514 |
| MseI | TTAA | 4 cut(s) | 195, 336, 411, 446 |
| MspCI | CTTAAG | 1 cut(s) | 194 |
| MspI | CCGG | 2 cut(s) | 276, 289 |
| MspR9I | CCNGG | 1 cut(s) | 564 |
| MvaI | CCWGG | 1 cut(s) | 564 |
| NdeII | GATC | 3 cut(s) | 265, 384, 490 |
| NlaIII | CATG | 1 cut(s) | 252 |
| NlaIV | GGNNCC | 1 cut(s) | 156 |
| PfeI | GAWTC | 2 cut(s) | 52, 111 |
| PkrI | GCNGC | 1 cut(s) | 96 |
| Psp6I | CCWGG | 1 cut(s) | 562 |
| PspGI | CCWGG | 1 cut(s) | 562 |
| PspN4I | GGNNCC | 1 cut(s) | 156 |
| PspPI | GGNCC | 1 cut(s) | 566 |
| RsaI | GTAC | 3 cut(s) | 10, 162, 548 |
| RsaNI | GTAC | 3 cut(s) | 9, 161, 547 |
| SaqAI | TTAA | 4 cut(s) | 195, 336, 411, 446 |
| SatI | GCNGC | 1 cut(s) | 95 |
| Sau3AI | GATC | 3 cut(s) | 265, 384, 490 |
| Sau96I | GGNCC | 1 cut(s) | 566 |
| ScrFI | CCNGG | 1 cut(s) | 564 |
| SduI | GDGCHC | 1 cut(s) | 121 |
| SetI | ASST | 9 cut(s) | 81, 99, 183, 195, 239, 331, 498, 509, 525 |
| SfaNI | GCATC | 2 cut(s) | 425, 567 |
| SinI | GGWCC | 1 cut(s) | 566 |
| SmlI | CTYRAG | 2 cut(s) | 194, 254 |
| SmoI | CTYRAG | 2 cut(s) | 194, 254 |
| Sse9I | AATT | 4 cut(s) | 218, 243, 372, 442 |
| SsiI | CCGC | 1 cut(s) | 349 |
| SspMI | CTAG | 1 cut(s) | 48 |
| StyD4I | CCNGG | 1 cut(s) | 562 |
| StyI | CCWWGG | 1 cut(s) | 513 |
| TaiI | ACGT | 1 cut(s) | 509 |
| TaqI | TCGA | 3 cut(s) | 239, 268, 426 |
| TasI | AATT | 4 cut(s) | 218, 243, 372, 442 |
| TatI | WGTACW | 1 cut(s) | 160 |
| TfiI | GAWTC | 2 cut(s) | 52, 111 |
| Tru1I | TTAA | 4 cut(s) | 195, 336, 411, 446 |
| Tru9I | TTAA | 4 cut(s) | 195, 336, 411, 446 |
| TscAI | CASTG | 1 cut(s) | 394 |
| TseI | GCWGC | 1 cut(s) | 94 |
| TspDTI | ATGAA | 1 cut(s) | 500 |
| TspGWI | ACGGA | 1 cut(s) | 104 |
| TspRI | CASTG | 1 cut(s) | 394 |
| Vha464I | CTTAAG | 1 cut(s) | 194 |
| VpaK11BI | GGWCC | 1 cut(s) | 566 |
| XapI | RAATTY | 1 cut(s) | 442 |
| XmiI | GTMKAC | 1 cut(s) | 509 |
| XspI | CTAG | 1 cut(s) | 48 |