ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 58, 134, 202 |
| AclWI | GGATC | 1 cut(s) | 148 |
| AcuI | CTGAAG | 1 cut(s) | 278 |
| AfaI | GTAC | 2 cut(s) | 5, 174 |
| AgeI | ACCGGT | 1 cut(s) | 407 |
| AgsI | TTSAA | 8 cut(s) | 64, 217, 241, 271, 281, 296, 302, 388 |
| AluBI | AGCT | 4 cut(s) | 116, 265, 325, 483 |
| AluI | AGCT | 4 cut(s) | 116, 265, 325, 483 |
| Alw21I | GWGCWC | 1 cut(s) | 267 |
| AlwI | GGATC | 1 cut(s) | 148 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 334 |
| ApeKI | GCWGC | 4 cut(s) | 322, 325, 334, 428 |
| AsiGI | ACCGGT | 1 cut(s) | 407 |
| AsuHPI | GGTGA | 3 cut(s) | 47, 135, 407 |
| BanII | GRGCYC | 1 cut(s) | 267 |
| BbsI | GAAGAC | 1 cut(s) | 131 |
| Bbv12I | GWGCWC | 1 cut(s) | 267 |
| BbvI | GCAGC | 4 cut(s) | 312, 321, 334, 415 |
| BccI | CCATC | 1 cut(s) | 310 |
| BfaI | CTAG | 2 cut(s) | 180, 484 |
| BfmI | CTRYAG | 1 cut(s) | 326 |
| BisI | GCNGC | 4 cut(s) | 323, 326, 335, 429 |
| BlsI | GCNGC | 4 cut(s) | 324, 327, 336, 430 |
| BmsI | GCATC | 2 cut(s) | 121, 321 |
| BpiI | GAAGAC | 1 cut(s) | 131 |
| BsaWI | WCCGGW | 1 cut(s) | 407 |
| Bse118I | RCCGGY | 1 cut(s) | 407 |
| Bse1I | ACTGG | 1 cut(s) | 125 |
| Bse3DI | GCAATG | 1 cut(s) | 53 |
| BseMI | GCAATG | 1 cut(s) | 53 |
| BseMII | CTCAG | 1 cut(s) | 276 |
| BseNI | ACTGG | 1 cut(s) | 125 |
| BseRI | GAGGAG | 1 cut(s) | 107 |
| BseXI | GCAGC | 4 cut(s) | 312, 321, 334, 415 |
| Bsh1285I | CGRYCG | 1 cut(s) | 138 |
| BshTI | ACCGGT | 1 cut(s) | 407 |
| BsiEI | CGRYCG | 1 cut(s) | 138 |
| BsiHKAI | GWGCWC | 1 cut(s) | 267 |
| BsiSI | CCGG | 1 cut(s) | 408 |
| Bsp1286I | GDGCHC | 1 cut(s) | 267 |
| Bsp143I | GATC | 1 cut(s) | 140 |
| BspACI | CCGC | 3 cut(s) | 58, 134, 202 |
| BspCNI | CTCAG | 1 cut(s) | 277 |
| BspMAI | CTGCAG | 1 cut(s) | 330 |
| BspPI | GGATC | 1 cut(s) | 148 |
| BsrDI | GCAATG | 1 cut(s) | 53 |
| BsrFI | RCCGGY | 1 cut(s) | 407 |
| BsrI | ACTGG | 1 cut(s) | 125 |
| BssAI | RCCGGY | 1 cut(s) | 407 |
| BssMI | GATC | 1 cut(s) | 140 |
| Bst6I | CTCTTC | 1 cut(s) | 434 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 334 |
| BstC8I | GCNNGC | 1 cut(s) | 24 |
| BstDEI | CTNAG | 1 cut(s) | 285 |
| BstKTI | GATC | 1 cut(s) | 143 |
| BstMBI | GATC | 1 cut(s) | 140 |
| BstMCI | CGRYCG | 1 cut(s) | 138 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 57, 331, 334 |
| BstSFI | CTRYAG | 1 cut(s) | 326 |
| BstV1I | GCAGC | 4 cut(s) | 312, 321, 334, 415 |
| BstV2I | GAAGAC | 1 cut(s) | 131 |
| Cac8I | GCNNGC | 1 cut(s) | 24 |
| CaiI | CAGNNNCTG | 1 cut(s) | 334 |
| Cfr10I | RCCGGY | 1 cut(s) | 407 |
| Csp6I | GTAC | 2 cut(s) | 4, 173 |
| CspAI | ACCGGT | 1 cut(s) | 407 |
| CviAII | CATG | 2 cut(s) | 19, 89 |
| CviJI | RGCY | 6 cut(s) | 82, 116, 265, 325, 428, 483 |
| CviKI_1 | RGCY | 6 cut(s) | 82, 116, 265, 325, 428, 483 |
| CviQI | GTAC | 2 cut(s) | 4, 173 |
| DdeI | CTNAG | 1 cut(s) | 285 |
| DpnI | GATC | 1 cut(s) | 142 |
| DpnII | GATC | 1 cut(s) | 140 |
| DraI | TTTAAA | 1 cut(s) | 456 |
| Eam1104I | CTCTTC | 1 cut(s) | 434 |
| EarI | CTCTTC | 1 cut(s) | 434 |
| EciI | GGCGGA | 1 cut(s) | 217 |
| Ecl136II | GAGCTC | 1 cut(s) | 265 |
| Eco24I | GRGCYC | 1 cut(s) | 267 |
| Eco53kI | GAGCTC | 1 cut(s) | 265 |
| Eco57I | CTGAAG | 1 cut(s) | 278 |
| EcoICRI | GAGCTC | 1 cut(s) | 265 |
| EcoT38I | GRGCYC | 1 cut(s) | 267 |
| FaeI | CATG | 2 cut(s) | 22, 92 |
| FaiI | YATR | 5 cut(s) | 20, 90, 177, 466, 468 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 251, 283 |
| FatI | CATG | 2 cut(s) | 18, 88 |
| Fnu4HI | GCNGC | 4 cut(s) | 323, 326, 335, 429 |
| FriOI | GRGCYC | 1 cut(s) | 267 |
| Fsp4HI | GCNGC | 4 cut(s) | 323, 326, 335, 429 |
| FspBI | CTAG | 2 cut(s) | 180, 484 |
| GluI | GCNGC | 4 cut(s) | 323, 326, 335, 429 |
| HapII | CCGG | 1 cut(s) | 408 |
| Hin1II | CATG | 2 cut(s) | 22, 92 |
| HinfI | GANTC | 1 cut(s) | 350 |
| HpaII | CCGG | 1 cut(s) | 408 |
| HphI | GGTGA | 3 cut(s) | 47, 135, 407 |
| Hpy188I | TCNGA | 2 cut(s) | 140, 286 |
| Hpy188III | TCNNGA | 1 cut(s) | 268 |
| HpyAV | CCTTC | 3 cut(s) | 223, 253, 386 |
| HpyCH4V | TGCA | 4 cut(s) | 22, 88, 328, 431 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 57, 331, 334 |
| HpyF3I | CTNAG | 1 cut(s) | 285 |
| Hsp92II | CATG | 2 cut(s) | 22, 92 |
| Kzo9I | GATC | 1 cut(s) | 140 |
| LmnI | GCTCC | 2 cut(s) | 262, 319 |
| LpnPI | CCDG | 5 cut(s) | 106, 385, 421, 421, 462 |
| Lsp1109I | GCAGC | 4 cut(s) | 312, 321, 334, 415 |
| LweI | GCATC | 2 cut(s) | 121, 321 |
| MaeI | CTAG | 2 cut(s) | 180, 484 |
| MaeIII | GTNAC | 3 cut(s) | 98, 376, 395 |
| MalI | GATC | 1 cut(s) | 142 |
| MboI | GATC | 1 cut(s) | 140 |
| MboII | GAAGA | 3 cut(s) | 136, 253, 451 |
| MfeI | CAATTG | 1 cut(s) | 311 |
| MhlI | GDGCHC | 1 cut(s) | 267 |
| MluCI | AATT | 2 cut(s) | 64, 311 |
| MmeI | TCCRAC | 1 cut(s) | 118 |
| MnlI | CCTC | 5 cut(s) | 64, 85, 156, 280, 340 |
| MseI | TTAA | 2 cut(s) | 372, 455 |
| MspA1I | CMGCKG | 1 cut(s) | 325 |
| MspI | CCGG | 1 cut(s) | 408 |
| MunI | CAATTG | 1 cut(s) | 311 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 57, 331, 334 |
| NdeII | GATC | 1 cut(s) | 140 |
| NlaIII | CATG | 2 cut(s) | 22, 92 |
| NmuCI | GTSAC | 2 cut(s) | 98, 395 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 108 |
| PfeI | GAWTC | 1 cut(s) | 350 |
| PinAI | ACCGGT | 1 cut(s) | 407 |
| PkrI | GCNGC | 4 cut(s) | 324, 327, 336, 430 |
| Psp124BI | GAGCTC | 1 cut(s) | 267 |
| PstI | CTGCAG | 1 cut(s) | 330 |
| PstNI | CAGNNNCTG | 1 cut(s) | 334 |
| PvuII | CAGCTG | 1 cut(s) | 325 |
| RsaI | GTAC | 2 cut(s) | 5, 174 |
| RsaNI | GTAC | 2 cut(s) | 4, 173 |
| SacI | GAGCTC | 1 cut(s) | 267 |
| SaqAI | TTAA | 2 cut(s) | 372, 455 |
| SatI | GCNGC | 4 cut(s) | 323, 326, 335, 429 |
| Sau3AI | GATC | 1 cut(s) | 140 |
| SduI | GDGCHC | 1 cut(s) | 267 |
| SetI | ASST | 9 cut(s) | 118, 148, 215, 267, 291, 327, 378, 397, 485 |
| SfaNI | GCATC | 2 cut(s) | 121, 321 |
| SfcI | CTRYAG | 1 cut(s) | 326 |
| Sse9I | AATT | 2 cut(s) | 64, 311 |
| SsiI | CCGC | 3 cut(s) | 58, 134, 202 |
| SspI | AATATT | 1 cut(s) | 451 |
| SspMI | CTAG | 2 cut(s) | 180, 484 |
| SstI | GAGCTC | 1 cut(s) | 267 |
| TaqI | TCGA | 1 cut(s) | 111 |
| TasI | AATT | 2 cut(s) | 64, 311 |
| TatI | WGTACW | 1 cut(s) | 172 |
| TfiI | GAWTC | 1 cut(s) | 350 |
| Tru1I | TTAA | 2 cut(s) | 372, 455 |
| Tru9I | TTAA | 2 cut(s) | 372, 455 |
| TseFI | GTSAC | 2 cut(s) | 98, 395 |
| TseI | GCWGC | 4 cut(s) | 322, 325, 334, 428 |
| Tsp45I | GTSAC | 2 cut(s) | 98, 395 |
| TspDTI | ATGAA | 3 cut(s) | 7, 407, 486 |
| XspI | CTAG | 2 cut(s) | 180, 484 |