ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 270 |
| AccB1I | GGYRCC | 1 cut(s) | 694 |
| AciI | CCGC | 1 cut(s) | 236 |
| AclWI | GGATC | 1 cut(s) | 393 |
| AcsI | RAATTY | 2 cut(s) | 544, 617 |
| AfaI | GTAC | 3 cut(s) | 75, 88, 259 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 732 |
| AflIII | ACRYGT | 1 cut(s) | 880 |
| AgsI | TTSAA | 9 cut(s) | 54, 148, 251, 382, 433, 482, 623, 638, 769 |
| AjnI | CCWGG | 2 cut(s) | 301, 846 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 93, 125 |
| AluBI | AGCT | 5 cut(s) | 68, 353, 376, 877, 905 |
| AluI | AGCT | 5 cut(s) | 68, 353, 376, 877, 905 |
| Alw21I | GWGCWC | 1 cut(s) | 294 |
| Alw26I | GTCTC | 2 cut(s) | 113, 769 |
| AlwI | GGATC | 1 cut(s) | 393 |
| AoxI | GGCC | 2 cut(s) | 467, 738 |
| ApeKI | GCWGC | 3 cut(s) | 65, 154, 373 |
| ApoI | RAATTY | 2 cut(s) | 544, 617 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 500, 532 |
| AspLEI | GCGC | 2 cut(s) | 154, 271 |
| AspS9I | GGNCC | 3 cut(s) | 190, 299, 467 |
| AsuHPI | GGTGA | 2 cut(s) | 317, 509 |
| AvaII | GGWCC | 2 cut(s) | 190, 299 |
| BaeGI | GKGCMC | 1 cut(s) | 697 |
| BanI | GGYRCC | 1 cut(s) | 694 |
| BbsI | GAAGAC | 1 cut(s) | 147 |
| Bbv12I | GWGCWC | 1 cut(s) | 294 |
| BbvI | GCAGC | 3 cut(s) | 77, 141, 385 |
| BccI | CCATC | 7 cut(s) | 28, 194, 309, 458, 730, 784, 814 |
| BceAI | ACGGC | 2 cut(s) | 78, 500 |
| BciT130I | CCWGG | 2 cut(s) | 303, 848 |
| BcoDI | GTCTC | 2 cut(s) | 113, 769 |
| BfaI | CTAG | 3 cut(s) | 167, 528, 809 |
| BfmI | CTRYAG | 1 cut(s) | 183 |
| BisI | GCNGC | 3 cut(s) | 66, 155, 374 |
| BlpI | GCTNAGC | 1 cut(s) | 354 |
| BlsI | GCNGC | 3 cut(s) | 67, 156, 375 |
| Bme1390I | CCNGG | 2 cut(s) | 303, 848 |
| Bme18I | GGWCC | 2 cut(s) | 190, 299 |
| BmgT120I | GGNCC | 3 cut(s) | 190, 299, 467 |
| BmiI | GGNNCC | 1 cut(s) | 696 |
| BmrFI | CCNGG | 2 cut(s) | 303, 848 |
| BmsI | GCATC | 2 cut(s) | 271, 280 |
| BpiI | GAAGAC | 1 cut(s) | 147 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 354 |
| BsaJI | CCNNGG | 3 cut(s) | 410, 511, 741 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 732 |
| Bse3DI | GCAATG | 1 cut(s) | 368 |
| BseBI | CCWGG | 2 cut(s) | 303, 848 |
| BseDI | CCNNGG | 3 cut(s) | 410, 511, 741 |
| BseGI | GGATG | 2 cut(s) | 741, 829 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 732 |
| BseMI | GCAATG | 1 cut(s) | 368 |
| BseMII | CTCAG | 4 cut(s) | 72, 208, 403, 885 |
| BseRI | GAGGAG | 2 cut(s) | 866, 911 |
| BseSI | GKGCMC | 1 cut(s) | 697 |
| BseXI | GCAGC | 3 cut(s) | 77, 141, 385 |
| BshFI | GGCC | 2 cut(s) | 469, 740 |
| BshNI | GGYRCC | 1 cut(s) | 694 |
| BsiHKAI | GWGCWC | 1 cut(s) | 294 |
| BslFI | GGGAC | 2 cut(s) | 81, 440 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 732 |
| BsmAI | GTCTC | 2 cut(s) | 113, 769 |
| BsmFI | GGGAC | 2 cut(s) | 81, 440 |
| BsnI | GGCC | 2 cut(s) | 469, 740 |
| Bsp1286I | GDGCHC | 2 cut(s) | 294, 697 |
| Bsp143I | GATC | 3 cut(s) | 126, 385, 394 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 354 |
| BspACI | CCGC | 1 cut(s) | 236 |
| BspANI | GGCC | 2 cut(s) | 469, 740 |
| BspCNI | CTCAG | 4 cut(s) | 73, 207, 402, 886 |
| BspLI | GGNNCC | 1 cut(s) | 696 |
| BspPI | GGATC | 1 cut(s) | 393 |
| BspT107I | GGYRCC | 1 cut(s) | 694 |
| BsrDI | GCAATG | 1 cut(s) | 368 |
| BssECI | CCNNGG | 3 cut(s) | 410, 511, 741 |
| BssMI | GATC | 3 cut(s) | 126, 385, 394 |
| BssT1I | CCWWGG | 3 cut(s) | 410, 511, 741 |
| Bst2UI | CCWGG | 2 cut(s) | 303, 848 |
| Bst4CI | ACNGT | 2 cut(s) | 832, 838 |
| BstC8I | GCNNGC | 1 cut(s) | 678 |
| BstDEI | CTNAG | 7 cut(s) | 81, 194, 354, 389, 549, 714, 894 |
| BstF5I | GGATG | 2 cut(s) | 741, 829 |
| BstHHI | GCGC | 2 cut(s) | 154, 271 |
| BstKTI | GATC | 3 cut(s) | 129, 388, 397 |
| BstMAI | GTCTC | 2 cut(s) | 113, 769 |
| BstMBI | GATC | 3 cut(s) | 126, 385, 394 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 163, 350 |
| BstNI | CCWGG | 2 cut(s) | 303, 848 |
| BstNSI | RCATGY | 2 cut(s) | 644, 884 |
| BstSCI | CCNGG | 2 cut(s) | 301, 846 |
| BstSFI | CTRYAG | 1 cut(s) | 183 |
| BstSLI | GKGCMC | 1 cut(s) | 697 |
| BstV1I | GCAGC | 3 cut(s) | 77, 141, 385 |
| BstV2I | GAAGAC | 1 cut(s) | 147 |
| BstX2I | RGATCY | 1 cut(s) | 385 |
| BstYI | RGATCY | 1 cut(s) | 385 |
| BsuRI | GGCC | 2 cut(s) | 469, 740 |
| BtgZI | GCGATG | 1 cut(s) | 328 |
| BtsCI | GGATG | 2 cut(s) | 741, 829 |
| BtsIMutI | CAGTG | 2 cut(s) | 202, 843 |
| Cac8I | GCNNGC | 1 cut(s) | 678 |
| CfoI | GCGC | 2 cut(s) | 154, 271 |
| Cfr13I | GGNCC | 3 cut(s) | 190, 299, 467 |
| CsiI | ACCWGGT | 1 cut(s) | 301 |
| Csp6I | GTAC | 3 cut(s) | 74, 87, 258 |
| CviAII | CATG | 4 cut(s) | 19, 537, 641, 881 |
| CviQI | GTAC | 3 cut(s) | 74, 87, 258 |
| DdeI | CTNAG | 7 cut(s) | 81, 194, 354, 389, 549, 714, 894 |
| DpnI | GATC | 3 cut(s) | 128, 387, 396 |
| DpnII | GATC | 3 cut(s) | 126, 385, 394 |
| DraI | TTTAAA | 1 cut(s) | 616 |
| Eco130I | CCWWGG | 3 cut(s) | 410, 511, 741 |
| Eco47I | GGWCC | 2 cut(s) | 190, 299 |
| EcoO109I | RGGNCCY | 1 cut(s) | 190 |
| EcoRI | GAATTC | 1 cut(s) | 544 |
| EcoRII | CCWGG | 2 cut(s) | 301, 846 |
| EcoT14I | CCWWGG | 3 cut(s) | 410, 511, 741 |
| ErhI | CCWWGG | 3 cut(s) | 410, 511, 741 |
| FaeI | CATG | 4 cut(s) | 22, 540, 644, 884 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 128, 160, 748, 780 |
| FaqI | GGGAC | 2 cut(s) | 81, 440 |
| FatI | CATG | 4 cut(s) | 18, 536, 640, 880 |
| FauNDI | CATATG | 1 cut(s) | 558 |
| Fnu4HI | GCNGC | 3 cut(s) | 66, 155, 374 |
| FokI | GGATG | 2 cut(s) | 748, 836 |
| Fsp4HI | GCNGC | 3 cut(s) | 66, 155, 374 |
| FspBI | CTAG | 3 cut(s) | 167, 528, 809 |
| FspI | TGCGCA | 1 cut(s) | 270 |
| GlaI | GCGC | 2 cut(s) | 153, 270 |
| GluI | GCNGC | 3 cut(s) | 66, 155, 374 |
| HaeIII | GGCC | 2 cut(s) | 469, 740 |
| HhaI | GCGC | 2 cut(s) | 154, 271 |
| Hin1II | CATG | 4 cut(s) | 22, 540, 644, 884 |
| Hin6I | GCGC | 2 cut(s) | 152, 269 |
| HinP1I | GCGC | 2 cut(s) | 152, 269 |
| HindIII | AAGCTT | 1 cut(s) | 903 |
| HinfI | GANTC | 2 cut(s) | 623, 653 |
| HphI | GGTGA | 2 cut(s) | 317, 509 |
| Hpy166II | GTNNAC | 2 cut(s) | 299, 308 |
| Hpy188I | TCNGA | 2 cut(s) | 33, 895 |
| Hpy188III | TCNNGA | 3 cut(s) | 54, 809, 910 |
| Hpy8I | GTNNAC | 2 cut(s) | 299, 308 |
| HpyAV | CCTTC | 3 cut(s) | 130, 280, 376 |
| HpyCH4III | ACNGT | 2 cut(s) | 832, 838 |
| HpyCH4IV | ACGT | 1 cut(s) | 595 |
| HpyCH4V | TGCA | 3 cut(s) | 157, 344, 373 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 163, 350 |
| HpyF3I | CTNAG | 7 cut(s) | 81, 194, 354, 389, 549, 714, 894 |
| HpySE526I | ACGT | 1 cut(s) | 595 |
| Hsp92II | CATG | 4 cut(s) | 22, 540, 644, 884 |
| HspAI | GCGC | 2 cut(s) | 152, 269 |
| Kzo9I | GATC | 3 cut(s) | 126, 385, 394 |
| LmnI | GCTCC | 1 cut(s) | 27 |
| LpnPI | CCDG | 9 cut(s) | 288, 312, 315, 556, 662, 675, 833, 860, 895 |
| Lsp1109I | GCAGC | 3 cut(s) | 77, 141, 385 |
| LweI | GCATC | 2 cut(s) | 271, 280 |
| MabI | ACCWGGT | 1 cut(s) | 301 |
| MaeI | CTAG | 3 cut(s) | 167, 528, 809 |
| MaeII | ACGT | 1 cut(s) | 595 |
| MaeIII | GTNAC | 5 cut(s) | 207, 359, 709, 826, 832 |
| MalI | GATC | 3 cut(s) | 128, 387, 396 |
| MboI | GATC | 3 cut(s) | 126, 385, 394 |
| MboII | GAAGA | 7 cut(s) | 4, 53, 152, 469, 730, 824, 868 |
| MfeI | CAATTG | 1 cut(s) | 158 |
| MflI | RGATCY | 1 cut(s) | 385 |
| MhlI | GDGCHC | 2 cut(s) | 294, 697 |
| MluCI | AATT | 5 cut(s) | 102, 158, 544, 617, 815 |
| MseI | TTAA | 4 cut(s) | 399, 584, 615, 663 |
| MslI | CAYNNNNRTG | 1 cut(s) | 279 |
| MspA1I | CMGCKG | 1 cut(s) | 376 |
| MspR9I | CCNGG | 2 cut(s) | 303, 848 |
| MunI | CAATTG | 1 cut(s) | 158 |
| MvaI | CCWGG | 2 cut(s) | 303, 848 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 163, 350 |
| NdeI | CATATG | 1 cut(s) | 558 |
| NdeII | GATC | 3 cut(s) | 126, 385, 394 |
| NlaIII | CATG | 4 cut(s) | 22, 540, 644, 884 |
| NlaIV | GGNNCC | 1 cut(s) | 696 |
| NmuCI | GTSAC | 2 cut(s) | 207, 359 |
| NsbI | TGCGCA | 1 cut(s) | 270 |
| NspI | RCATGY | 2 cut(s) | 644, 884 |
| PciI | ACATGT | 1 cut(s) | 880 |
| PfeI | GAWTC | 2 cut(s) | 623, 653 |
| PfoI | TCCNGGA | 1 cut(s) | 846 |
| PkrI | GCNGC | 3 cut(s) | 67, 156, 375 |
| PpuMI | RGGWCCY | 1 cut(s) | 190 |
| PscI | ACATGT | 1 cut(s) | 880 |
| Psp5II | RGGWCCY | 1 cut(s) | 190 |
| Psp6I | CCWGG | 2 cut(s) | 301, 846 |
| PspGI | CCWGG | 2 cut(s) | 301, 846 |
| PspN4I | GGNNCC | 1 cut(s) | 696 |
| PspPI | GGNCC | 3 cut(s) | 190, 299, 467 |
| PspPPI | RGGWCCY | 1 cut(s) | 190 |
| PsuI | RGATCY | 1 cut(s) | 385 |
| PvuII | CAGCTG | 1 cut(s) | 376 |
| RsaI | GTAC | 3 cut(s) | 75, 88, 259 |
| RsaNI | GTAC | 3 cut(s) | 74, 87, 258 |
| RseI | CAYNNNNRTG | 1 cut(s) | 279 |
| SaqAI | TTAA | 4 cut(s) | 399, 584, 615, 663 |
| SatI | GCNGC | 3 cut(s) | 66, 155, 374 |
| Sau3AI | GATC | 3 cut(s) | 126, 385, 394 |
| Sau96I | GGNCC | 3 cut(s) | 190, 299, 467 |
| ScrFI | CCNGG | 2 cut(s) | 303, 848 |
| SduI | GDGCHC | 2 cut(s) | 294, 697 |
| SexAI | ACCWGGT | 1 cut(s) | 301 |
| SfaNI | GCATC | 2 cut(s) | 271, 280 |
| SfcI | CTRYAG | 1 cut(s) | 183 |
| SinI | GGWCC | 2 cut(s) | 190, 299 |
| SmiI | ATTTAAAT | 1 cut(s) | 616 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 279 |
| Sse9I | AATT | 5 cut(s) | 102, 158, 544, 617, 815 |
| SsiI | CCGC | 1 cut(s) | 236 |
| SspMI | CTAG | 3 cut(s) | 167, 528, 809 |
| StyD4I | CCNGG | 2 cut(s) | 301, 846 |
| StyI | CCWWGG | 3 cut(s) | 410, 511, 741 |
| SwaI | ATTTAAAT | 1 cut(s) | 616 |
| TaaI | ACNGT | 2 cut(s) | 832, 838 |
| TaiI | ACGT | 1 cut(s) | 598 |
| TaqI | TCGA | 1 cut(s) | 601 |
| TasI | AATT | 5 cut(s) | 102, 158, 544, 617, 815 |
| TfiI | GAWTC | 2 cut(s) | 623, 653 |
| Tru1I | TTAA | 4 cut(s) | 399, 584, 615, 663 |
| Tru9I | TTAA | 4 cut(s) | 399, 584, 615, 663 |
| TscAI | CASTG | 2 cut(s) | 202, 843 |
| TseFI | GTSAC | 2 cut(s) | 207, 359 |
| TseI | GCWGC | 3 cut(s) | 65, 154, 373 |
| Tsp45I | GTSAC | 2 cut(s) | 207, 359 |
| TspDTI | ATGAA | 2 cut(s) | 4, 450 |
| TspRI | CASTG | 2 cut(s) | 202, 843 |
| VpaK11BI | GGWCC | 2 cut(s) | 190, 299 |
| XapI | RAATTY | 2 cut(s) | 544, 617 |
| XbaI | TCTAGA | 1 cut(s) | 808 |
| XceI | RCATGY | 2 cut(s) | 644, 884 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 733 |
| XspI | CTAG | 3 cut(s) | 167, 528, 809 |