ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1068 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 18, 339 |
| AccII | CGCG | 3 cut(s) | 295, 310, 997 |
| AciI | CCGC | 6 cut(s) | 189, 257, 287, 298, 308, 995 |
| AclWI | GGATC | 3 cut(s) | 470, 518, 552 |
| AcoI | YGGCCR | 3 cut(s) | 91, 471, 904 |
| AcsI | RAATTY | 1 cut(s) | 841 |
| AcuI | CTGAAG | 1 cut(s) | 368 |
| AcvI | CACGTG | 1 cut(s) | 304 |
| AcyI | GRCGYC | 1 cut(s) | 1065 |
| AfaI | GTAC | 4 cut(s) | 353, 832, 880, 973 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 18, 100, 147, 148, 227, 339, 913 |
| AflII | CTTAAG | 1 cut(s) | 260 |
| AflIII | ACRYGT | 1 cut(s) | 1036 |
| AgsI | TTSAA | 5 cut(s) | 7, 541, 718, 1012, 1141 |
| AjnI | CCWGG | 2 cut(s) | 17, 641 |
| AluBI | AGCT | 3 cut(s) | 330, 410, 459 |
| AluI | AGCT | 3 cut(s) | 330, 410, 459 |
| AlwI | GGATC | 3 cut(s) | 470, 518, 552 |
| AoxI | GGCC | 6 cut(s) | 91, 138, 150, 471, 821, 904 |
| ApaI | GGGCCC | 2 cut(s) | 142, 154 |
| ApoI | RAATTY | 1 cut(s) | 841 |
| AspLEI | GCGC | 3 cut(s) | 297, 312, 861 |
| AspS9I | GGNCC | 6 cut(s) | 138, 139, 150, 151, 628, 740 |
| AsuHPI | GGTGA | 2 cut(s) | 276, 979 |
| AsuII | TTCGAA | 1 cut(s) | 184 |
| AvaII | GGWCC | 2 cut(s) | 628, 740 |
| AxyI | CCTNAGG | 2 cut(s) | 419, 1133 |
| BaeGI | GKGCMC | 2 cut(s) | 142, 154 |
| BaeI | ACNNNNGTAYC | 1 cut(s) | 39 |
| BalI | TGGCCA | 2 cut(s) | 473, 906 |
| BanII | GRGCYC | 2 cut(s) | 142, 154 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 909, 941 |
| BbrPI | CACGTG | 1 cut(s) | 304 |
| BbsI | GAAGAC | 1 cut(s) | 1079 |
| BccI | CCATC | 2 cut(s) | 731, 892 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 495, 529 |
| BciT130I | CCWGG | 2 cut(s) | 19, 643 |
| BfaI | CTAG | 6 cut(s) | 143, 192, 222, 431, 809, 912 |
| BfmI | CTRYAG | 1 cut(s) | 962 |
| BfrI | CTTAAG | 1 cut(s) | 260 |
| BisI | GCNGC | 2 cut(s) | 298, 308 |
| BlpI | GCTNAGC | 1 cut(s) | 59 |
| BlsI | GCNGC | 2 cut(s) | 299, 309 |
| Bme1390I | CCNGG | 2 cut(s) | 19, 643 |
| Bme18I | GGWCC | 2 cut(s) | 628, 740 |
| BmgT120I | GGNCC | 6 cut(s) | 138, 139, 150, 151, 628, 740 |
| BmiI | GGNNCC | 4 cut(s) | 140, 151, 152, 629 |
| BmrFI | CCNGG | 2 cut(s) | 19, 643 |
| BmrI | ACTGGG | 2 cut(s) | 236, 633 |
| BmsI | GCATC | 1 cut(s) | 330 |
| BmuI | ACTGGG | 2 cut(s) | 236, 633 |
| BpiI | GAAGAC | 1 cut(s) | 1079 |
| BpmI | CTGGAG | 3 cut(s) | 188, 316, 971 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 59 |
| Bpu14I | TTCGAA | 1 cut(s) | 184 |
| Bsa29I | ATCGAT | 1 cut(s) | 1006 |
| BsaAI | YACGTR | 1 cut(s) | 304 |
| BsaBI | GATNNNNATC | 1 cut(s) | 942 |
| BsaHI | GRCGYC | 1 cut(s) | 1065 |
| BsaJI | CCNNGG | 4 cut(s) | 18, 266, 642, 683 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1075, 1105 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 18, 100, 147, 148, 227, 339, 913 |
| Bse118I | RCCGGY | 1 cut(s) | 89 |
| Bse1I | ACTGG | 5 cut(s) | 171, 231, 452, 628, 743 |
| Bse21I | CCTNAGG | 2 cut(s) | 419, 1133 |
| Bse3DI | GCAATG | 1 cut(s) | 523 |
| Bse8I | GATNNNNATC | 1 cut(s) | 942 |
| BseBI | CCWGG | 2 cut(s) | 19, 643 |
| BseCI | ATCGAT | 1 cut(s) | 1006 |
| BseDI | CCNNGG | 4 cut(s) | 18, 266, 642, 683 |
| BseGI | GGATG | 1 cut(s) | 486 |
| BseJI | GATNNNNATC | 1 cut(s) | 942 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 18, 100, 147, 148, 227, 339, 913 |
| BseMI | GCAATG | 1 cut(s) | 523 |
| BseMII | CTCAG | 3 cut(s) | 73, 505, 653 |
| BseNI | ACTGG | 5 cut(s) | 171, 231, 452, 628, 743 |
| BseSI | GKGCMC | 2 cut(s) | 142, 154 |
| BseYI | CCCAGC | 1 cut(s) | 932 |
| BsgI | GTGCAG | 1 cut(s) | 1079 |
| Bsh1236I | CGCG | 3 cut(s) | 295, 310, 997 |
| BshFI | GGCC | 6 cut(s) | 93, 140, 152, 473, 823, 906 |
| BshVI | ATCGAT | 1 cut(s) | 1006 |
| BsiSI | CCGG | 1 cut(s) | 90 |
| BslFI | GGGAC | 6 cut(s) | 140, 244, 252, 345, 357, 641 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 18, 100, 147, 148, 227, 339, 913 |
| BsmFI | GGGAC | 6 cut(s) | 140, 244, 252, 345, 357, 641 |
| BsnI | GGCC | 6 cut(s) | 93, 140, 152, 473, 823, 906 |
| Bsp119I | TTCGAA | 1 cut(s) | 184 |
| Bsp120I | GGGCCC | 2 cut(s) | 138, 150 |
| Bsp1286I | GDGCHC | 2 cut(s) | 142, 154 |
| Bsp143I | GATC | 9 cut(s) | 281, 383, 462, 510, 544, 634, 667, 805, 943 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 59 |
| BspACI | CCGC | 6 cut(s) | 189, 257, 287, 298, 308, 995 |
| BspANI | GGCC | 6 cut(s) | 93, 140, 152, 473, 823, 906 |
| BspCNI | CTCAG | 3 cut(s) | 72, 504, 654 |
| BspDI | ATCGAT | 1 cut(s) | 1006 |
| BspFNI | CGCG | 3 cut(s) | 295, 310, 997 |
| BspLI | GGNNCC | 4 cut(s) | 140, 151, 152, 629 |
| BspPI | GGATC | 3 cut(s) | 470, 518, 552 |
| BspT104I | TTCGAA | 1 cut(s) | 184 |
| BspTI | CTTAAG | 1 cut(s) | 260 |
| BsrDI | GCAATG | 1 cut(s) | 523 |
| BsrFI | RCCGGY | 1 cut(s) | 89 |
| BsrI | ACTGG | 5 cut(s) | 171, 231, 452, 628, 743 |
| BssAI | RCCGGY | 1 cut(s) | 89 |
| BssECI | CCNNGG | 4 cut(s) | 18, 266, 642, 683 |
| BssMI | GATC | 9 cut(s) | 281, 383, 462, 510, 544, 634, 667, 805, 943 |
| BssNI | GRCGYC | 1 cut(s) | 1065 |
| BssT1I | CCWWGG | 1 cut(s) | 683 |
| Bst2UI | CCWGG | 2 cut(s) | 19, 643 |
| Bst4CI | ACNGT | 2 cut(s) | 632, 976 |
| BstACI | GRCGYC | 1 cut(s) | 1065 |
| BstAFI | CTTAAG | 1 cut(s) | 260 |
| BstBAI | YACGTR | 1 cut(s) | 304 |
| BstBI | TTCGAA | 1 cut(s) | 184 |
| BstDEI | CTNAG | 6 cut(s) | 59, 110, 419, 491, 662, 1133 |
| BstF5I | GGATG | 1 cut(s) | 486 |
| BstFNI | CGCG | 3 cut(s) | 295, 310, 997 |
| BstHHI | GCGC | 3 cut(s) | 297, 312, 861 |
| BstKTI | GATC | 9 cut(s) | 284, 386, 465, 513, 547, 637, 670, 808, 946 |
| BstMBI | GATC | 9 cut(s) | 281, 383, 462, 510, 544, 634, 667, 805, 943 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 318, 327 |
| BstNI | CCWGG | 2 cut(s) | 19, 643 |
| BstNSI | RCATGY | 2 cut(s) | 253, 1040 |
| BstSCI | CCNGG | 2 cut(s) | 17, 641 |
| BstSFI | CTRYAG | 1 cut(s) | 962 |
| BstSLI | GKGCMC | 2 cut(s) | 142, 154 |
| BstUI | CGCG | 3 cut(s) | 295, 310, 997 |
| BstV2I | GAAGAC | 1 cut(s) | 1079 |
| BstX2I | RGATCY | 3 cut(s) | 462, 510, 544 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 459, 481 |
| BstYI | RGATCY | 3 cut(s) | 462, 510, 544 |
| Bsu15I | ATCGAT | 1 cut(s) | 1006 |
| Bsu36I | CCTNAGG | 2 cut(s) | 419, 1133 |
| BsuRI | GGCC | 6 cut(s) | 93, 140, 152, 473, 823, 906 |
| BsuTUI | ATCGAT | 1 cut(s) | 1006 |
| BtsCI | GGATG | 1 cut(s) | 486 |
| BtsIMutI | CAGTG | 1 cut(s) | 750 |
| CfoI | GCGC | 3 cut(s) | 297, 312, 861 |
| Cfr10I | RCCGGY | 1 cut(s) | 89 |
| Cfr13I | GGNCC | 6 cut(s) | 138, 139, 150, 151, 628, 740 |
| ClaI | ATCGAT | 1 cut(s) | 1006 |
| CseI | GACGC | 2 cut(s) | 301, 980 |
| Csp6I | GTAC | 4 cut(s) | 352, 831, 879, 972 |
| CviAII | CATG | 9 cut(s) | 250, 375, 475, 481, 888, 908, 947, 1037, 1120 |
| CviQI | GTAC | 4 cut(s) | 352, 831, 879, 972 |
| DdeI | CTNAG | 6 cut(s) | 59, 110, 419, 491, 662, 1133 |
| DpnI | GATC | 9 cut(s) | 283, 385, 464, 512, 546, 636, 669, 807, 945 |
| DpnII | GATC | 9 cut(s) | 281, 383, 462, 510, 544, 634, 667, 805, 943 |
| EaeI | YGGCCR | 3 cut(s) | 91, 471, 904 |
| Eco130I | CCWWGG | 1 cut(s) | 683 |
| Eco147I | AGGCCT | 1 cut(s) | 823 |
| Eco24I | GRGCYC | 2 cut(s) | 142, 154 |
| Eco47I | GGWCC | 2 cut(s) | 628, 740 |
| Eco57I | CTGAAG | 1 cut(s) | 368 |
| Eco72I | CACGTG | 1 cut(s) | 304 |
| Eco81I | CCTNAGG | 2 cut(s) | 419, 1133 |
| EcoO109I | RGGNCCY | 2 cut(s) | 139, 150 |
| EcoRI | GAATTC | 1 cut(s) | 841 |
| EcoRII | CCWGG | 2 cut(s) | 17, 641 |
| EcoT14I | CCWWGG | 1 cut(s) | 683 |
| EcoT22I | ATGCAT | 1 cut(s) | 1125 |
| EcoT38I | GRGCYC | 2 cut(s) | 142, 154 |
| ErhI | CCWWGG | 1 cut(s) | 683 |
| FaeI | CATG | 9 cut(s) | 253, 378, 478, 484, 891, 911, 950, 1040, 1123 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 165, 197 |
| FaqI | GGGAC | 6 cut(s) | 140, 244, 252, 345, 357, 641 |
| FatI | CATG | 9 cut(s) | 249, 374, 474, 480, 887, 907, 946, 1036, 1119 |
| Fnu4HI | GCNGC | 2 cut(s) | 298, 308 |
| FokI | GGATG | 1 cut(s) | 473 |
| FriOI | GRGCYC | 2 cut(s) | 142, 154 |
| Fsp4HI | GCNGC | 2 cut(s) | 298, 308 |
| FspBI | CTAG | 6 cut(s) | 143, 192, 222, 431, 809, 912 |
| GlaI | GCGC | 3 cut(s) | 296, 311, 860 |
| GluI | GCNGC | 2 cut(s) | 298, 308 |
| GsaI | CCCAGC | 1 cut(s) | 936 |
| GsuI | CTGGAG | 3 cut(s) | 188, 316, 971 |
| HaeIII | GGCC | 6 cut(s) | 93, 140, 152, 473, 823, 906 |
| HapII | CCGG | 1 cut(s) | 90 |
| HgaI | GACGC | 2 cut(s) | 301, 980 |
| HhaI | GCGC | 3 cut(s) | 297, 312, 861 |
| Hin1I | GRCGYC | 1 cut(s) | 1065 |
| Hin1II | CATG | 9 cut(s) | 253, 378, 478, 484, 891, 911, 950, 1040, 1123 |
| Hin6I | GCGC | 3 cut(s) | 295, 310, 859 |
| HinP1I | GCGC | 3 cut(s) | 295, 310, 859 |
| HinfI | GANTC | 5 cut(s) | 128, 559, 938, 1008, 1141 |
| HpaII | CCGG | 1 cut(s) | 90 |
| HphI | GGTGA | 2 cut(s) | 276, 979 |
| Hpy166II | GTNNAC | 1 cut(s) | 831 |
| Hpy188I | TCNGA | 4 cut(s) | 326, 672, 847, 943 |
| Hpy188III | TCNNGA | 4 cut(s) | 333, 413, 776, 1069 |
| Hpy8I | GTNNAC | 1 cut(s) | 831 |
| HpyAV | CCTTC | 4 cut(s) | 140, 155, 535, 935 |
| HpyCH4III | ACNGT | 2 cut(s) | 632, 976 |
| HpyCH4IV | ACGT | 2 cut(s) | 303, 1065 |
| HpyCH4V | TGCA | 6 cut(s) | 87, 516, 617, 1033, 1060, 1123 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 318, 327 |
| HpyF3I | CTNAG | 6 cut(s) | 59, 110, 419, 491, 662, 1133 |
| HpySE526I | ACGT | 2 cut(s) | 303, 1065 |
| Hsp92I | GRCGYC | 1 cut(s) | 1065 |
| Hsp92II | CATG | 9 cut(s) | 253, 378, 478, 484, 891, 911, 950, 1040, 1123 |
| HspAI | GCGC | 3 cut(s) | 295, 310, 859 |
| Kzo9I | GATC | 9 cut(s) | 281, 383, 462, 510, 544, 634, 667, 805, 943 |
| LmnI | GCTCC | 2 cut(s) | 335, 955 |
| LweI | GCATC | 1 cut(s) | 330 |
| MaeI | CTAG | 6 cut(s) | 143, 192, 222, 431, 809, 912 |
| MaeII | ACGT | 2 cut(s) | 303, 1065 |
| MaeIII | GTNAC | 4 cut(s) | 252, 893, 920, 1081 |
| MalI | GATC | 9 cut(s) | 283, 385, 464, 512, 546, 636, 669, 807, 945 |
| MboI | GATC | 9 cut(s) | 281, 383, 462, 510, 544, 634, 667, 805, 943 |
| MboII | GAAGA | 4 cut(s) | 393, 419, 742, 1084 |
| MflI | RGATCY | 3 cut(s) | 462, 510, 544 |
| MhlI | GDGCHC | 2 cut(s) | 142, 154 |
| MlsI | TGGCCA | 2 cut(s) | 473, 906 |
| MluCI | AATT | 3 cut(s) | 499, 570, 841 |
| MluNI | TGGCCA | 2 cut(s) | 473, 906 |
| MlyI | GAGTC | 1 cut(s) | 122 |
| MmeI | TCCRAC | 1 cut(s) | 476 |
| Mox20I | TGGCCA | 2 cut(s) | 473, 906 |
| Mph1103I | ATGCAT | 1 cut(s) | 1125 |
| MscI | TGGCCA | 2 cut(s) | 473, 906 |
| MseI | TTAA | 4 cut(s) | 261, 705, 1017, 1041 |
| MslI | CAYNNNNRTG | 2 cut(s) | 479, 889 |
| Msp20I | TGGCCA | 2 cut(s) | 473, 906 |
| MspA1I | CMGCKG | 1 cut(s) | 289 |
| MspCI | CTTAAG | 1 cut(s) | 260 |
| MspI | CCGG | 1 cut(s) | 90 |
| MspR9I | CCNGG | 2 cut(s) | 19, 643 |
| MvaI | CCWGG | 2 cut(s) | 19, 643 |
| MvnI | CGCG | 3 cut(s) | 295, 310, 997 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 318, 327 |
| NdeII | GATC | 9 cut(s) | 281, 383, 462, 510, 544, 634, 667, 805, 943 |
| NlaIII | CATG | 9 cut(s) | 253, 378, 478, 484, 891, 911, 950, 1040, 1123 |
| NlaIV | GGNNCC | 4 cut(s) | 140, 151, 152, 629 |
| NmeAIII | GCCGAG | 1 cut(s) | 247 |
| NmuCI | GTSAC | 1 cut(s) | 893 |
| NsiI | ATGCAT | 1 cut(s) | 1125 |
| NspI | RCATGY | 2 cut(s) | 253, 1040 |
| NspV | TTCGAA | 1 cut(s) | 184 |
| PceI | AGGCCT | 1 cut(s) | 823 |
| PciI | ACATGT | 1 cut(s) | 1036 |
| PfeI | GAWTC | 4 cut(s) | 559, 938, 1008, 1141 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 18, 339 |
| PkrI | GCNGC | 2 cut(s) | 299, 309 |
| PleI | GAGTC | 1 cut(s) | 122 |
| PmaCI | CACGTG | 1 cut(s) | 304 |
| PmlI | CACGTG | 1 cut(s) | 304 |
| PpsI | GAGTC | 1 cut(s) | 122 |
| Ppu21I | YACGTR | 1 cut(s) | 304 |
| PscI | ACATGT | 1 cut(s) | 1036 |
| Psp6I | CCWGG | 2 cut(s) | 17, 641 |
| PspCI | CACGTG | 1 cut(s) | 304 |
| PspFI | CCCAGC | 1 cut(s) | 932 |
| PspGI | CCWGG | 2 cut(s) | 17, 641 |
| PspN4I | GGNNCC | 4 cut(s) | 140, 151, 152, 629 |
| PspOMI | GGGCCC | 2 cut(s) | 138, 150 |
| PspPI | GGNCC | 6 cut(s) | 138, 139, 150, 151, 628, 740 |
| PsuI | RGATCY | 3 cut(s) | 462, 510, 544 |
| RsaI | GTAC | 4 cut(s) | 353, 832, 880, 973 |
| RsaNI | GTAC | 4 cut(s) | 352, 831, 879, 972 |
| RseI | CAYNNNNRTG | 2 cut(s) | 479, 889 |
| SaqAI | TTAA | 4 cut(s) | 261, 705, 1017, 1041 |
| SatI | GCNGC | 2 cut(s) | 298, 308 |
| Sau3AI | GATC | 9 cut(s) | 281, 383, 462, 510, 544, 634, 667, 805, 943 |
| Sau96I | GGNCC | 6 cut(s) | 138, 139, 150, 151, 628, 740 |
| SchI | GAGTC | 1 cut(s) | 122 |
| ScrFI | CCNGG | 2 cut(s) | 19, 643 |
| SduI | GDGCHC | 2 cut(s) | 142, 154 |
| SfaNI | GCATC | 1 cut(s) | 330 |
| SfcI | CTRYAG | 1 cut(s) | 962 |
| SfuI | TTCGAA | 1 cut(s) | 184 |
| SinI | GGWCC | 2 cut(s) | 628, 740 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 479, 889 |
| SmlI | CTYRAG | 1 cut(s) | 260 |
| SmoI | CTYRAG | 1 cut(s) | 260 |
| Sse9I | AATT | 3 cut(s) | 499, 570, 841 |
| SseBI | AGGCCT | 1 cut(s) | 823 |
| SsiI | CCGC | 6 cut(s) | 189, 257, 287, 298, 308, 995 |
| SspMI | CTAG | 6 cut(s) | 143, 192, 222, 431, 809, 912 |
| StuI | AGGCCT | 1 cut(s) | 823 |
| StyD4I | CCNGG | 2 cut(s) | 17, 641 |
| StyI | CCWWGG | 1 cut(s) | 683 |
| TaaI | ACNGT | 2 cut(s) | 632, 976 |
| TaiI | ACGT | 2 cut(s) | 306, 1068 |
| TaqI | TCGA | 5 cut(s) | 184, 368, 505, 1006, 1165 |
| TasI | AATT | 3 cut(s) | 499, 570, 841 |
| TatI | WGTACW | 4 cut(s) | 351, 830, 878, 971 |
| TauI | GCSGC | 2 cut(s) | 300, 310 |
| TfiI | GAWTC | 4 cut(s) | 559, 938, 1008, 1141 |
| Tru1I | TTAA | 4 cut(s) | 261, 705, 1017, 1041 |
| Tru9I | TTAA | 4 cut(s) | 261, 705, 1017, 1041 |
| TscAI | CASTG | 1 cut(s) | 750 |
| TseFI | GTSAC | 1 cut(s) | 893 |
| Tsp45I | GTSAC | 1 cut(s) | 893 |
| TspDTI | ATGAA | 1 cut(s) | 491 |
| TspGWI | ACGGA | 1 cut(s) | 113 |
| TspRI | CASTG | 1 cut(s) | 750 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 18, 339 |
| Vha464I | CTTAAG | 1 cut(s) | 260 |
| VpaK11BI | GGWCC | 2 cut(s) | 628, 740 |
| XapI | RAATTY | 1 cut(s) | 841 |
| XceI | RCATGY | 2 cut(s) | 253, 1040 |
| XspI | CTAG | 6 cut(s) | 143, 192, 222, 431, 809, 912 |
| ZraI | GACGTC | 1 cut(s) | 1066 |
| Zsp2I | ATGCAT | 1 cut(s) | 1125 |