ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 60 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 386 |
| AccBSI | CCGCTC | 1 cut(s) | 320 |
| AciI | CCGC | 1 cut(s) | 320 |
| AcsI | RAATTY | 3 cut(s) | 159, 370, 641 |
| AdeI | CACNNNGTG | 1 cut(s) | 285 |
| AfaI | GTAC | 1 cut(s) | 195 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 132, 282, 386, 440 |
| AflIII | ACRYGT | 1 cut(s) | 581 |
| AgsI | TTSAA | 6 cut(s) | 154, 253, 369, 376, 473, 641 |
| AhlI | ACTAGT | 1 cut(s) | 47 |
| AjnI | CCWGG | 1 cut(s) | 335 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 537, 569 |
| AluBI | AGCT | 3 cut(s) | 109, 293, 359 |
| AluI | AGCT | 3 cut(s) | 109, 293, 359 |
| AoxI | GGCC | 1 cut(s) | 495 |
| ApeKI | GCWGC | 1 cut(s) | 356 |
| ApoI | RAATTY | 3 cut(s) | 159, 370, 641 |
| AspS9I | GGNCC | 1 cut(s) | 609 |
| AsuHPI | GGTGA | 2 cut(s) | 74, 496 |
| AvaII | GGWCC | 1 cut(s) | 609 |
| BaeGI | GKGCMC | 1 cut(s) | 63 |
| BanI | GGYRCC | 1 cut(s) | 60 |
| BbvI | GCAGC | 1 cut(s) | 368 |
| BccI | CCATC | 1 cut(s) | 14 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 93, 104, 127, 138 |
| BciT130I | CCWGG | 1 cut(s) | 337 |
| BclI | TGATCA | 1 cut(s) | 510 |
| BcuI | ACTAGT | 1 cut(s) | 47 |
| BfaI | CTAG | 2 cut(s) | 48, 360 |
| BisI | GCNGC | 1 cut(s) | 357 |
| BlsI | GCNGC | 1 cut(s) | 358 |
| Bme1390I | CCNGG | 1 cut(s) | 337 |
| Bme18I | GGWCC | 1 cut(s) | 609 |
| BmgT120I | GGNCC | 1 cut(s) | 609 |
| BmiI | GGNNCC | 1 cut(s) | 62 |
| BmrFI | CCNGG | 1 cut(s) | 337 |
| BpmI | CTGGAG | 1 cut(s) | 315 |
| BsaAI | YACGTR | 1 cut(s) | 197 |
| BsaJI | CCNNGG | 1 cut(s) | 131 |
| BsaWI | WCCGGW | 1 cut(s) | 400 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 177, 207 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 132, 282, 386, 440 |
| Bse1I | ACTGG | 1 cut(s) | 605 |
| BseBI | CCWGG | 1 cut(s) | 337 |
| BseDI | CCNNGG | 1 cut(s) | 131 |
| BseGI | GGATG | 2 cut(s) | 22, 232 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 132, 282, 386, 440 |
| BseNI | ACTGG | 1 cut(s) | 605 |
| BseRI | GAGGAG | 4 cut(s) | 89, 417, 420, 423 |
| BseSI | GKGCMC | 1 cut(s) | 63 |
| BseXI | GCAGC | 1 cut(s) | 368 |
| BsgI | GTGCAG | 1 cut(s) | 522 |
| BshFI | GGCC | 1 cut(s) | 497 |
| BshNI | GGYRCC | 1 cut(s) | 60 |
| BsiSI | CCGG | 2 cut(s) | 401, 451 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 132, 282, 386, 440 |
| BsnI | GGCC | 1 cut(s) | 497 |
| Bsp1286I | GDGCHC | 1 cut(s) | 63 |
| Bsp143I | GATC | 1 cut(s) | 510 |
| BspACI | CCGC | 1 cut(s) | 320 |
| BspANI | GGCC | 1 cut(s) | 497 |
| BspHI | TCATGA | 1 cut(s) | 490 |
| BspLI | GGNNCC | 1 cut(s) | 62 |
| BspT107I | GGYRCC | 1 cut(s) | 60 |
| BsrBI | CCGCTC | 1 cut(s) | 320 |
| BsrI | ACTGG | 1 cut(s) | 605 |
| BssECI | CCNNGG | 1 cut(s) | 131 |
| BssMI | GATC | 1 cut(s) | 510 |
| BssT1I | CCWWGG | 1 cut(s) | 131 |
| Bst2UI | CCWGG | 1 cut(s) | 337 |
| Bst4CI | ACNGT | 2 cut(s) | 139, 219 |
| BstBAI | YACGTR | 1 cut(s) | 197 |
| BstC8I | GCNNGC | 1 cut(s) | 116 |
| BstDEI | CTNAG | 2 cut(s) | 174, 410 |
| BstF5I | GGATG | 2 cut(s) | 22, 232 |
| BstKTI | GATC | 1 cut(s) | 513 |
| BstMBI | GATC | 1 cut(s) | 510 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 115 |
| BstNI | CCWGG | 1 cut(s) | 337 |
| BstSCI | CCNGG | 1 cut(s) | 335 |
| BstSLI | GKGCMC | 1 cut(s) | 63 |
| BstSNI | TACGTA | 1 cut(s) | 197 |
| BstV1I | GCAGC | 1 cut(s) | 368 |
| BsuRI | GGCC | 1 cut(s) | 497 |
| BtsCI | GGATG | 2 cut(s) | 22, 232 |
| Cac8I | GCNNGC | 1 cut(s) | 116 |
| CciI | TCATGA | 1 cut(s) | 490 |
| Cfr13I | GGNCC | 1 cut(s) | 609 |
| Csp6I | GTAC | 1 cut(s) | 194 |
| CviAII | CATG | 4 cut(s) | 36, 90, 386, 491 |
| CviJI | RGCY | 7 cut(s) | 109, 261, 293, 332, 359, 457, 497 |
| CviKI_1 | RGCY | 7 cut(s) | 109, 261, 293, 332, 359, 457, 497 |
| CviQI | GTAC | 1 cut(s) | 194 |
| DdeI | CTNAG | 2 cut(s) | 174, 410 |
| DpnI | GATC | 1 cut(s) | 512 |
| DpnII | GATC | 1 cut(s) | 510 |
| DraIII | CACNNNGTG | 1 cut(s) | 285 |
| Eco105I | TACGTA | 1 cut(s) | 197 |
| Eco130I | CCWWGG | 1 cut(s) | 131 |
| Eco147I | AGGCCT | 1 cut(s) | 497 |
| Eco47I | GGWCC | 1 cut(s) | 609 |
| EcoRI | GAATTC | 1 cut(s) | 641 |
| EcoRII | CCWGG | 1 cut(s) | 335 |
| EcoT14I | CCWWGG | 1 cut(s) | 131 |
| EcoT22I | ATGCAT | 1 cut(s) | 579 |
| ErhI | CCWWGG | 1 cut(s) | 131 |
| FaeI | CATG | 4 cut(s) | 39, 93, 389, 494 |
| FaiI | YATR | 9 cut(s) | 10, 37, 91, 269, 387, 396, 492, 551, 579 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 446, 478 |
| FatI | CATG | 4 cut(s) | 35, 89, 385, 490 |
| FbaI | TGATCA | 1 cut(s) | 510 |
| Fnu4HI | GCNGC | 1 cut(s) | 357 |
| FokI | GGATG | 2 cut(s) | 29, 239 |
| Fsp4HI | GCNGC | 1 cut(s) | 357 |
| FspBI | CTAG | 2 cut(s) | 48, 360 |
| GluI | GCNGC | 1 cut(s) | 357 |
| GsuI | CTGGAG | 1 cut(s) | 315 |
| HaeIII | GGCC | 1 cut(s) | 497 |
| HapII | CCGG | 2 cut(s) | 401, 451 |
| Hin1II | CATG | 4 cut(s) | 39, 93, 389, 494 |
| HincII | GTYRAC | 3 cut(s) | 45, 234, 446 |
| HindII | GTYRAC | 3 cut(s) | 45, 234, 446 |
| HinfI | GANTC | 2 cut(s) | 297, 487 |
| HpaII | CCGG | 2 cut(s) | 401, 451 |
| HphI | GGTGA | 2 cut(s) | 74, 496 |
| Hpy166II | GTNNAC | 5 cut(s) | 45, 194, 234, 446, 612 |
| Hpy188I | TCNGA | 4 cut(s) | 76, 104, 146, 540 |
| Hpy188III | TCNNGA | 1 cut(s) | 491 |
| Hpy8I | GTNNAC | 5 cut(s) | 45, 194, 234, 446, 612 |
| HpyAV | CCTTC | 3 cut(s) | 172, 176, 286 |
| HpyCH4III | ACNGT | 2 cut(s) | 139, 219 |
| HpyCH4IV | ACGT | 3 cut(s) | 196, 236, 583 |
| HpyCH4V | TGCA | 4 cut(s) | 35, 214, 503, 577 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 115 |
| HpyF3I | CTNAG | 2 cut(s) | 174, 410 |
| HpySE526I | ACGT | 3 cut(s) | 196, 236, 583 |
| Hsp92II | CATG | 4 cut(s) | 39, 93, 389, 494 |
| Ksp22I | TGATCA | 1 cut(s) | 510 |
| Kzo9I | GATC | 1 cut(s) | 510 |
| LmnI | GCTCC | 1 cut(s) | 102 |
| Lsp1109I | GCAGC | 1 cut(s) | 368 |
| MaeI | CTAG | 2 cut(s) | 48, 360 |
| MaeII | ACGT | 3 cut(s) | 196, 236, 583 |
| MaeIII | GTNAC | 2 cut(s) | 80, 242 |
| MalI | GATC | 1 cut(s) | 512 |
| MbiI | CCGCTC | 1 cut(s) | 320 |
| MboI | GATC | 1 cut(s) | 510 |
| MboII | GAAGA | 2 cut(s) | 162, 398 |
| MhlI | GDGCHC | 1 cut(s) | 63 |
| MluCI | AATT | 4 cut(s) | 159, 370, 381, 641 |
| MlyI | GAGTC | 2 cut(s) | 306, 496 |
| MmeI | TCCRAC | 1 cut(s) | 291 |
| Mph1103I | ATGCAT | 1 cut(s) | 579 |
| MseI | TTAA | 2 cut(s) | 465, 594 |
| MspI | CCGG | 2 cut(s) | 401, 451 |
| MspR9I | CCNGG | 1 cut(s) | 337 |
| MvaI | CCWGG | 1 cut(s) | 337 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 115 |
| NdeII | GATC | 1 cut(s) | 510 |
| NlaIII | CATG | 4 cut(s) | 39, 93, 389, 494 |
| NlaIV | GGNNCC | 1 cut(s) | 62 |
| NmuCI | GTSAC | 2 cut(s) | 80, 242 |
| NsiI | ATGCAT | 1 cut(s) | 579 |
| PagI | TCATGA | 1 cut(s) | 490 |
| PceI | AGGCCT | 1 cut(s) | 497 |
| PflFI | GACNNNGTC | 1 cut(s) | 91 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 386 |
| PfoI | TCCNGGA | 1 cut(s) | 335 |
| PkrI | GCNGC | 1 cut(s) | 358 |
| PleI | GAGTC | 2 cut(s) | 305, 495 |
| PpsI | GAGTC | 2 cut(s) | 305, 495 |
| Ppu21I | YACGTR | 1 cut(s) | 197 |
| Psp6I | CCWGG | 1 cut(s) | 335 |
| PspGI | CCWGG | 1 cut(s) | 335 |
| PspN4I | GGNNCC | 1 cut(s) | 62 |
| PspPI | GGNCC | 1 cut(s) | 609 |
| PsyI | GACNNNGTC | 1 cut(s) | 91 |
| RsaI | GTAC | 1 cut(s) | 195 |
| RsaNI | GTAC | 1 cut(s) | 194 |
| SaqAI | TTAA | 2 cut(s) | 465, 594 |
| SatI | GCNGC | 1 cut(s) | 357 |
| Sau3AI | GATC | 1 cut(s) | 510 |
| Sau96I | GGNCC | 1 cut(s) | 609 |
| SchI | GAGTC | 2 cut(s) | 306, 496 |
| ScrFI | CCNGG | 1 cut(s) | 337 |
| SduI | GDGCHC | 1 cut(s) | 63 |
| SinI | GGWCC | 1 cut(s) | 609 |
| SnaBI | TACGTA | 1 cut(s) | 197 |
| SpeI | ACTAGT | 1 cut(s) | 47 |
| Sse9I | AATT | 4 cut(s) | 159, 370, 381, 641 |
| SseBI | AGGCCT | 1 cut(s) | 497 |
| SsiI | CCGC | 1 cut(s) | 320 |
| SspMI | CTAG | 2 cut(s) | 48, 360 |
| StuI | AGGCCT | 1 cut(s) | 497 |
| StyD4I | CCNGG | 1 cut(s) | 335 |
| StyI | CCWWGG | 1 cut(s) | 131 |
| TaaI | ACNGT | 2 cut(s) | 139, 219 |
| TaiI | ACGT | 3 cut(s) | 199, 239, 586 |
| TaqI | TCGA | 1 cut(s) | 289 |
| TasI | AATT | 4 cut(s) | 159, 370, 381, 641 |
| Tru1I | TTAA | 2 cut(s) | 465, 594 |
| Tru9I | TTAA | 2 cut(s) | 465, 594 |
| TseFI | GTSAC | 2 cut(s) | 80, 242 |
| TseI | GCWGC | 1 cut(s) | 356 |
| Tsp45I | GTSAC | 2 cut(s) | 80, 242 |
| TspDTI | ATGAA | 3 cut(s) | 17, 256, 374 |
| TspGWI | ACGGA | 1 cut(s) | 356 |
| Tth111I | GACNNNGTC | 1 cut(s) | 91 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 386 |
| VpaK11BI | GGWCC | 1 cut(s) | 609 |
| XapI | RAATTY | 3 cut(s) | 159, 370, 641 |
| XspI | CTAG | 2 cut(s) | 48, 360 |
| Zsp2I | ATGCAT | 1 cut(s) | 579 |