ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 86, 277, 318 |
| AfaI | GTAC | 1 cut(s) | 202 |
| AgsI | TTSAA | 3 cut(s) | 55, 62, 371 |
| AluBI | AGCT | 3 cut(s) | 65, 134, 571 |
| AluI | AGCT | 3 cut(s) | 65, 134, 571 |
| Alw21I | GWGCWC | 1 cut(s) | 136 |
| Alw26I | GTCTC | 1 cut(s) | 190 |
| AlwI | GGATC | 3 cut(s) | 86, 277, 318 |
| AoxI | GGCC | 1 cut(s) | 510 |
| ApeKI | GCWGC | 2 cut(s) | 76, 220 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 344 |
| AspS9I | GGNCC | 1 cut(s) | 235 |
| AsuC2I | CCSGG | 1 cut(s) | 239 |
| AsuNHI | GCTAGC | 1 cut(s) | 11 |
| AvaII | GGWCC | 1 cut(s) | 235 |
| BanII | GRGCYC | 1 cut(s) | 136 |
| BauI | CACGAG | 1 cut(s) | 543 |
| Bbv12I | GWGCWC | 1 cut(s) | 136 |
| BbvI | GCAGC | 2 cut(s) | 88, 232 |
| BccI | CCATC | 3 cut(s) | 259, 301, 472 |
| BcnI | CCSGG | 1 cut(s) | 239 |
| BcoDI | GTCTC | 1 cut(s) | 190 |
| BfaI | CTAG | 2 cut(s) | 12, 248 |
| BfmI | CTRYAG | 1 cut(s) | 46 |
| BisI | GCNGC | 2 cut(s) | 77, 221 |
| BlsI | GCNGC | 2 cut(s) | 78, 222 |
| Bme1390I | CCNGG | 1 cut(s) | 239 |
| Bme18I | GGWCC | 1 cut(s) | 235 |
| BmgT120I | GGNCC | 1 cut(s) | 235 |
| BmiI | GGNNCC | 2 cut(s) | 236, 462 |
| BmrFI | CCNGG | 1 cut(s) | 239 |
| BmtI | GCTAGC | 1 cut(s) | 15 |
| BpuMI | CCSGG | 1 cut(s) | 239 |
| BsaJI | CCNNGG | 1 cut(s) | 513 |
| Bse3DI | GCAATG | 1 cut(s) | 24 |
| BseDI | CCNNGG | 1 cut(s) | 513 |
| BseMI | GCAATG | 1 cut(s) | 24 |
| BseMII | CTCAG | 2 cut(s) | 347, 408 |
| BseRI | GAGGAG | 1 cut(s) | 397 |
| BseXI | GCAGC | 2 cut(s) | 88, 232 |
| BshFI | GGCC | 1 cut(s) | 512 |
| BsiHKAI | GWGCWC | 1 cut(s) | 136 |
| BsiSI | CCGG | 1 cut(s) | 238 |
| BsmAI | GTCTC | 1 cut(s) | 190 |
| BsmBI | CGTCTC | 1 cut(s) | 190 |
| BsnI | GGCC | 1 cut(s) | 512 |
| Bsp1286I | GDGCHC | 1 cut(s) | 136 |
| Bsp143I | GATC | 4 cut(s) | 91, 282, 310, 496 |
| Bsp19I | CCATGG | 1 cut(s) | 513 |
| BspANI | GGCC | 1 cut(s) | 512 |
| BspCNI | CTCAG | 2 cut(s) | 346, 409 |
| BspLI | GGNNCC | 2 cut(s) | 236, 462 |
| BspOI | GCTAGC | 1 cut(s) | 15 |
| BspPI | GGATC | 3 cut(s) | 86, 277, 318 |
| BsrDI | GCAATG | 1 cut(s) | 24 |
| BssECI | CCNNGG | 1 cut(s) | 513 |
| BssMI | GATC | 4 cut(s) | 91, 282, 310, 496 |
| BssSI | CACGAG | 1 cut(s) | 543 |
| BssT1I | CCWWGG | 1 cut(s) | 513 |
| Bst2BI | CACGAG | 1 cut(s) | 543 |
| Bst6I | CTCTTC | 1 cut(s) | 246 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 226 |
| BstC8I | GCNNGC | 2 cut(s) | 13, 531 |
| BstDEI | CTNAG | 2 cut(s) | 333, 417 |
| BstDSI | CCRYGG | 1 cut(s) | 513 |
| BstKTI | GATC | 4 cut(s) | 94, 285, 313, 499 |
| BstMAI | GTCTC | 1 cut(s) | 190 |
| BstMBI | GATC | 4 cut(s) | 91, 282, 310, 496 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 220, 226 |
| BstNSI | RCATGY | 2 cut(s) | 11, 83 |
| BstSCI | CCNGG | 1 cut(s) | 237 |
| BstSFI | CTRYAG | 1 cut(s) | 46 |
| BstV1I | GCAGC | 2 cut(s) | 88, 232 |
| BsuRI | GGCC | 1 cut(s) | 512 |
| BtgI | CCRYGG | 1 cut(s) | 513 |
| BtsI | GCAGTG | 1 cut(s) | 486 |
| BtsIMutI | CAGTG | 1 cut(s) | 486 |
| Cac8I | GCNNGC | 2 cut(s) | 13, 531 |
| Cfr13I | GGNCC | 1 cut(s) | 235 |
| Csp6I | GTAC | 1 cut(s) | 201 |
| CviAII | CATG | 5 cut(s) | 8, 80, 104, 481, 514 |
| CviJI | RGCY | 4 cut(s) | 65, 134, 512, 571 |
| CviKI_1 | RGCY | 4 cut(s) | 65, 134, 512, 571 |
| CviQI | GTAC | 1 cut(s) | 201 |
| DdeI | CTNAG | 2 cut(s) | 333, 417 |
| DpnI | GATC | 4 cut(s) | 93, 284, 312, 498 |
| DpnII | GATC | 4 cut(s) | 91, 282, 310, 496 |
| Eam1104I | CTCTTC | 1 cut(s) | 246 |
| EarI | CTCTTC | 1 cut(s) | 246 |
| Ecl136II | GAGCTC | 1 cut(s) | 134 |
| Eco130I | CCWWGG | 1 cut(s) | 513 |
| Eco24I | GRGCYC | 1 cut(s) | 136 |
| Eco47I | GGWCC | 1 cut(s) | 235 |
| Eco53kI | GAGCTC | 1 cut(s) | 134 |
| EcoICRI | GAGCTC | 1 cut(s) | 134 |
| EcoT14I | CCWWGG | 1 cut(s) | 513 |
| EcoT38I | GRGCYC | 1 cut(s) | 136 |
| ErhI | CCWWGG | 1 cut(s) | 513 |
| Esp3I | CGTCTC | 1 cut(s) | 190 |
| FaeI | CATG | 5 cut(s) | 11, 83, 107, 484, 517 |
| FatI | CATG | 5 cut(s) | 7, 79, 103, 480, 513 |
| Fnu4HI | GCNGC | 2 cut(s) | 77, 221 |
| FriOI | GRGCYC | 1 cut(s) | 136 |
| Fsp4HI | GCNGC | 2 cut(s) | 77, 221 |
| FspBI | CTAG | 2 cut(s) | 12, 248 |
| GluI | GCNGC | 2 cut(s) | 77, 221 |
| HaeIII | GGCC | 1 cut(s) | 512 |
| HapII | CCGG | 1 cut(s) | 238 |
| Hin1II | CATG | 5 cut(s) | 11, 83, 107, 484, 517 |
| HincII | GTYRAC | 1 cut(s) | 85 |
| HindII | GTYRAC | 1 cut(s) | 85 |
| HindIII | AAGCTT | 1 cut(s) | 63 |
| HinfI | GANTC | 1 cut(s) | 413 |
| HpaII | CCGG | 1 cut(s) | 238 |
| Hpy166II | GTNNAC | 2 cut(s) | 85, 486 |
| Hpy188I | TCNGA | 2 cut(s) | 418, 496 |
| Hpy188III | TCNNGA | 4 cut(s) | 335, 349, 475, 500 |
| Hpy8I | GTNNAC | 2 cut(s) | 85, 486 |
| HpyAV | CCTTC | 1 cut(s) | 335 |
| HpyCH4IV | ACGT | 1 cut(s) | 199 |
| HpyCH4V | TGCA | 3 cut(s) | 76, 319, 529 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 220, 226 |
| HpyF3I | CTNAG | 2 cut(s) | 333, 417 |
| HpySE526I | ACGT | 1 cut(s) | 199 |
| Hsp92II | CATG | 5 cut(s) | 11, 83, 107, 484, 517 |
| Kzo9I | GATC | 4 cut(s) | 91, 282, 310, 496 |
| LmnI | GCTCC | 2 cut(s) | 131, 139 |
| LpnPI | CCDG | 5 cut(s) | 251, 320, 360, 485, 488 |
| Lsp1109I | GCAGC | 2 cut(s) | 88, 232 |
| MaeI | CTAG | 2 cut(s) | 12, 248 |
| MaeII | ACGT | 1 cut(s) | 199 |
| MaeIII | GTNAC | 3 cut(s) | 3, 269, 547 |
| MalI | GATC | 4 cut(s) | 93, 284, 312, 498 |
| MboI | GATC | 4 cut(s) | 91, 282, 310, 496 |
| MboII | GAAGA | 3 cut(s) | 263, 307, 352 |
| MhlI | GDGCHC | 1 cut(s) | 136 |
| MluCI | AATT | 2 cut(s) | 278, 302 |
| MlyI | GAGTC | 1 cut(s) | 407 |
| MmeI | TCCRAC | 2 cut(s) | 109, 562 |
| MnlI | CCTC | 7 cut(s) | 371, 375, 378, 412, 502, 502, 552 |
| MroXI | GAANNNNTTC | 1 cut(s) | 344 |
| MseI | TTAA | 4 cut(s) | 153, 183, 207, 399 |
| MspI | CCGG | 1 cut(s) | 238 |
| MspR9I | CCNGG | 1 cut(s) | 239 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 220, 226 |
| NciI | CCSGG | 1 cut(s) | 239 |
| NcoI | CCATGG | 1 cut(s) | 513 |
| NdeII | GATC | 4 cut(s) | 91, 282, 310, 496 |
| NheI | GCTAGC | 1 cut(s) | 11 |
| NlaIII | CATG | 5 cut(s) | 11, 83, 107, 484, 517 |
| NlaIV | GGNNCC | 2 cut(s) | 236, 462 |
| NspI | RCATGY | 2 cut(s) | 11, 83 |
| PdmI | GAANNNNTTC | 1 cut(s) | 344 |
| PkrI | GCNGC | 2 cut(s) | 78, 222 |
| PleI | GAGTC | 1 cut(s) | 407 |
| PpsI | GAGTC | 1 cut(s) | 407 |
| Psp124BI | GAGCTC | 1 cut(s) | 136 |
| PspN4I | GGNNCC | 2 cut(s) | 236, 462 |
| PspPI | GGNCC | 1 cut(s) | 235 |
| RsaI | GTAC | 1 cut(s) | 202 |
| RsaNI | GTAC | 1 cut(s) | 201 |
| SacI | GAGCTC | 1 cut(s) | 136 |
| SaqAI | TTAA | 4 cut(s) | 153, 183, 207, 399 |
| SatI | GCNGC | 2 cut(s) | 77, 221 |
| Sau3AI | GATC | 4 cut(s) | 91, 282, 310, 496 |
| Sau96I | GGNCC | 1 cut(s) | 235 |
| SchI | GAGTC | 1 cut(s) | 407 |
| ScrFI | CCNGG | 1 cut(s) | 239 |
| SduI | GDGCHC | 1 cut(s) | 136 |
| SetI | ASST | 9 cut(s) | 53, 67, 136, 150, 202, 213, 527, 544, 573 |
| SfcI | CTRYAG | 1 cut(s) | 46 |
| SinI | GGWCC | 1 cut(s) | 235 |
| Sse9I | AATT | 2 cut(s) | 278, 302 |
| SspMI | CTAG | 2 cut(s) | 12, 248 |
| SstI | GAGCTC | 1 cut(s) | 136 |
| StyD4I | CCNGG | 1 cut(s) | 237 |
| StyI | CCWWGG | 1 cut(s) | 513 |
| TaiI | ACGT | 1 cut(s) | 202 |
| TaqI | TCGA | 1 cut(s) | 350 |
| TasI | AATT | 2 cut(s) | 278, 302 |
| Tru1I | TTAA | 4 cut(s) | 153, 183, 207, 399 |
| Tru9I | TTAA | 4 cut(s) | 153, 183, 207, 399 |
| TscAI | CASTG | 1 cut(s) | 493 |
| TseI | GCWGC | 2 cut(s) | 76, 220 |
| TspDTI | ATGAA | 2 cut(s) | 120, 575 |
| TspRI | CASTG | 1 cut(s) | 493 |
| VpaK11BI | GGWCC | 1 cut(s) | 235 |
| XceI | RCATGY | 2 cut(s) | 11, 83 |
| XmnI | GAANNNNTTC | 1 cut(s) | 344 |
| XspI | CTAG | 2 cut(s) | 12, 248 |