ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 372 |
| AciI | CCGC | 1 cut(s) | 545 |
| AclWI | GGATC | 2 cut(s) | 270, 529 |
| AcoI | YGGCCR | 1 cut(s) | 520 |
| AcuI | CTGAAG | 1 cut(s) | 80 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 48, 529 |
| AflIII | ACRYGT | 1 cut(s) | 6 |
| AjiI | CACGTC | 1 cut(s) | 567 |
| AjnI | CCWGG | 1 cut(s) | 257 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 461, 493 |
| AluBI | AGCT | 1 cut(s) | 349 |
| AluI | AGCT | 1 cut(s) | 349 |
| Alw21I | GWGCWC | 1 cut(s) | 58 |
| Alw26I | GTCTC | 1 cut(s) | 183 |
| AlwI | GGATC | 2 cut(s) | 270, 529 |
| AoxI | GGCC | 2 cut(s) | 336, 520 |
| ApeKI | GCWGC | 2 cut(s) | 145, 239 |
| AspLEI | GCGC | 2 cut(s) | 400, 559 |
| AspS9I | GGNCC | 1 cut(s) | 421 |
| AsuHPI | GGTGA | 1 cut(s) | 544 |
| AvaII | GGWCC | 1 cut(s) | 421 |
| Bbv12I | GWGCWC | 1 cut(s) | 58 |
| BbvI | GCAGC | 2 cut(s) | 157, 251 |
| BccI | CCATC | 2 cut(s) | 347, 546 |
| BceAI | ACGGC | 3 cut(s) | 158, 208, 241 |
| BciT130I | CCWGG | 1 cut(s) | 259 |
| BcoDI | GTCTC | 1 cut(s) | 183 |
| BfaI | CTAG | 4 cut(s) | 48, 104, 216, 549 |
| BfoI | RGCGCY | 2 cut(s) | 401, 560 |
| BisI | GCNGC | 3 cut(s) | 146, 240, 545 |
| BlsI | GCNGC | 3 cut(s) | 147, 241, 546 |
| Bme1390I | CCNGG | 1 cut(s) | 259 |
| Bme18I | GGWCC | 1 cut(s) | 421 |
| BmgBI | CACGTC | 1 cut(s) | 567 |
| BmgT120I | GGNCC | 1 cut(s) | 421 |
| BmrFI | CCNGG | 1 cut(s) | 259 |
| BmsI | GCATC | 2 cut(s) | 160, 428 |
| BsaJI | CCNNGG | 4 cut(s) | 258, 299, 339, 424 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 48, 529 |
| Bse1I | ACTGG | 1 cut(s) | 420 |
| BseBI | CCWGG | 1 cut(s) | 259 |
| BseDI | CCNNGG | 4 cut(s) | 258, 299, 339, 424 |
| BseGI | GGATG | 2 cut(s) | 358, 443 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 48, 529 |
| BseNI | ACTGG | 1 cut(s) | 420 |
| BseXI | GCAGC | 2 cut(s) | 157, 251 |
| BseYI | CCCAGC | 3 cut(s) | 95, 310, 400 |
| BsgI | GTGCAG | 1 cut(s) | 258 |
| BshFI | GGCC | 2 cut(s) | 338, 522 |
| BsiHKAI | GWGCWC | 1 cut(s) | 58 |
| BslFI | GGGAC | 1 cut(s) | 114 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 48, 529 |
| BsmAI | GTCTC | 1 cut(s) | 183 |
| BsmBI | CGTCTC | 1 cut(s) | 183 |
| BsmFI | GGGAC | 1 cut(s) | 114 |
| BsnI | GGCC | 2 cut(s) | 338, 522 |
| Bsp1286I | GDGCHC | 1 cut(s) | 58 |
| Bsp143I | GATC | 4 cut(s) | 132, 244, 262, 534 |
| BspACI | CCGC | 1 cut(s) | 545 |
| BspANI | GGCC | 2 cut(s) | 338, 522 |
| BspHI | TCATGA | 1 cut(s) | 250 |
| BspPI | GGATC | 2 cut(s) | 270, 529 |
| BsrI | ACTGG | 1 cut(s) | 420 |
| BssECI | CCNNGG | 4 cut(s) | 258, 299, 339, 424 |
| BssMI | GATC | 4 cut(s) | 132, 244, 262, 534 |
| BssT1I | CCWWGG | 2 cut(s) | 339, 424 |
| Bst2UI | CCWGG | 1 cut(s) | 259 |
| Bst4CI | ACNGT | 2 cut(s) | 293, 300 |
| BstC8I | GCNNGC | 1 cut(s) | 54 |
| BstDSI | CCRYGG | 1 cut(s) | 299 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 46 |
| BstF5I | GGATG | 2 cut(s) | 358, 443 |
| BstH2I | RGCGCY | 2 cut(s) | 401, 560 |
| BstHHI | GCGC | 2 cut(s) | 400, 559 |
| BstKTI | GATC | 4 cut(s) | 135, 247, 265, 537 |
| BstMAI | GTCTC | 1 cut(s) | 183 |
| BstMBI | GATC | 4 cut(s) | 132, 244, 262, 534 |
| BstNI | CCWGG | 1 cut(s) | 259 |
| BstSCI | CCNGG | 1 cut(s) | 257 |
| BstV1I | GCAGC | 2 cut(s) | 157, 251 |
| BstX2I | RGATCY | 1 cut(s) | 262 |
| BstYI | RGATCY | 1 cut(s) | 262 |
| BsuRI | GGCC | 2 cut(s) | 338, 522 |
| BtgI | CCRYGG | 1 cut(s) | 299 |
| BtrI | CACGTC | 1 cut(s) | 567 |
| BtsCI | GGATG | 2 cut(s) | 358, 443 |
| BtsI | GCAGTG | 1 cut(s) | 180 |
| BtsIMutI | CAGTG | 1 cut(s) | 180 |
| Cac8I | GCNNGC | 1 cut(s) | 54 |
| CciI | TCATGA | 1 cut(s) | 250 |
| CfoI | GCGC | 2 cut(s) | 400, 559 |
| Cfr13I | GGNCC | 1 cut(s) | 421 |
| CviAII | CATG | 2 cut(s) | 251, 368 |
| CviJI | RGCY | 7 cut(s) | 85, 95, 148, 195, 338, 349, 522 |
| CviKI_1 | RGCY | 7 cut(s) | 85, 95, 148, 195, 338, 349, 522 |
| DpnI | GATC | 4 cut(s) | 134, 246, 264, 536 |
| DpnII | GATC | 4 cut(s) | 132, 244, 262, 534 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 372 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 372 |
| EaeI | YGGCCR | 1 cut(s) | 520 |
| Eco130I | CCWWGG | 2 cut(s) | 339, 424 |
| Eco47I | GGWCC | 1 cut(s) | 421 |
| Eco57I | CTGAAG | 1 cut(s) | 80 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 46 |
| EcoRII | CCWGG | 1 cut(s) | 257 |
| EcoT14I | CCWWGG | 2 cut(s) | 339, 424 |
| ErhI | CCWWGG | 2 cut(s) | 339, 424 |
| Esp3I | CGTCTC | 1 cut(s) | 183 |
| FaeI | CATG | 2 cut(s) | 254, 371 |
| FaiI | YATR | 7 cut(s) | 81, 115, 252, 308, 359, 369, 408 |
| FaqI | GGGAC | 1 cut(s) | 114 |
| FatI | CATG | 2 cut(s) | 250, 367 |
| Fnu4HI | GCNGC | 3 cut(s) | 146, 240, 545 |
| FokI | GGATG | 2 cut(s) | 365, 450 |
| Fsp4HI | GCNGC | 3 cut(s) | 146, 240, 545 |
| FspBI | CTAG | 4 cut(s) | 48, 104, 216, 549 |
| GlaI | GCGC | 2 cut(s) | 399, 558 |
| GluI | GCNGC | 3 cut(s) | 146, 240, 545 |
| GsaI | CCCAGC | 3 cut(s) | 99, 314, 404 |
| HaeII | RGCGCY | 2 cut(s) | 401, 560 |
| HaeIII | GGCC | 2 cut(s) | 338, 522 |
| HhaI | GCGC | 2 cut(s) | 400, 559 |
| Hin1II | CATG | 2 cut(s) | 254, 371 |
| Hin6I | GCGC | 2 cut(s) | 398, 557 |
| HinP1I | GCGC | 2 cut(s) | 398, 557 |
| HinfI | GANTC | 2 cut(s) | 254, 458 |
| HphI | GGTGA | 1 cut(s) | 544 |
| Hpy166II | GTNNAC | 3 cut(s) | 296, 421, 447 |
| Hpy188I | TCNGA | 3 cut(s) | 60, 392, 463 |
| Hpy188III | TCNNGA | 3 cut(s) | 16, 251, 562 |
| Hpy8I | GTNNAC | 3 cut(s) | 296, 421, 447 |
| Hpy99I | CGWCG | 1 cut(s) | 502 |
| HpyAV | CCTTC | 3 cut(s) | 159, 179, 463 |
| HpyCH4III | ACNGT | 2 cut(s) | 293, 300 |
| HpyCH4IV | ACGT | 2 cut(s) | 6, 566 |
| HpyCH4V | TGCA | 2 cut(s) | 173, 239 |
| HpySE526I | ACGT | 2 cut(s) | 6, 566 |
| Hsp92II | CATG | 2 cut(s) | 254, 371 |
| HspAI | GCGC | 2 cut(s) | 398, 557 |
| Kzo9I | GATC | 4 cut(s) | 132, 244, 262, 534 |
| Lsp1109I | GCAGC | 2 cut(s) | 157, 251 |
| LweI | GCATC | 2 cut(s) | 160, 428 |
| MaeI | CTAG | 4 cut(s) | 48, 104, 216, 549 |
| MaeII | ACGT | 2 cut(s) | 6, 566 |
| MaeIII | GTNAC | 1 cut(s) | 72 |
| MalI | GATC | 4 cut(s) | 134, 246, 264, 536 |
| MboI | GATC | 4 cut(s) | 132, 244, 262, 534 |
| MboII | GAAGA | 3 cut(s) | 73, 257, 260 |
| MflI | RGATCY | 1 cut(s) | 262 |
| MhlI | GDGCHC | 1 cut(s) | 58 |
| MluCI | AATT | 3 cut(s) | 19, 89, 229 |
| MlyI | GAGTC | 1 cut(s) | 263 |
| MmeI | TCCRAC | 1 cut(s) | 459 |
| MnlI | CCTC | 6 cut(s) | 52, 377, 388, 403, 498, 547 |
| MseI | TTAA | 3 cut(s) | 68, 129, 321 |
| MspR9I | CCNGG | 1 cut(s) | 259 |
| MvaI | CCWGG | 1 cut(s) | 259 |
| NdeII | GATC | 4 cut(s) | 132, 244, 262, 534 |
| NlaIII | CATG | 2 cut(s) | 254, 371 |
| NmuCI | GTSAC | 1 cut(s) | 72 |
| PagI | TCATGA | 1 cut(s) | 250 |
| PfeI | GAWTC | 1 cut(s) | 458 |
| PkrI | GCNGC | 3 cut(s) | 147, 241, 546 |
| PleI | GAGTC | 1 cut(s) | 262 |
| PpsI | GAGTC | 1 cut(s) | 262 |
| Psp6I | CCWGG | 1 cut(s) | 257 |
| PspFI | CCCAGC | 3 cut(s) | 95, 310, 400 |
| PspGI | CCWGG | 1 cut(s) | 257 |
| PspPI | GGNCC | 1 cut(s) | 421 |
| PsuI | RGATCY | 1 cut(s) | 262 |
| SaqAI | TTAA | 3 cut(s) | 68, 129, 321 |
| SatI | GCNGC | 3 cut(s) | 146, 240, 545 |
| Sau3AI | GATC | 4 cut(s) | 132, 244, 262, 534 |
| Sau96I | GGNCC | 1 cut(s) | 421 |
| SchI | GAGTC | 1 cut(s) | 263 |
| ScrFI | CCNGG | 1 cut(s) | 259 |
| SduI | GDGCHC | 1 cut(s) | 58 |
| SfaNI | GCATC | 2 cut(s) | 160, 428 |
| SinI | GGWCC | 1 cut(s) | 421 |
| Sse9I | AATT | 3 cut(s) | 19, 89, 229 |
| SsiI | CCGC | 1 cut(s) | 545 |
| SspMI | CTAG | 4 cut(s) | 48, 104, 216, 549 |
| StyD4I | CCNGG | 1 cut(s) | 257 |
| StyI | CCWWGG | 2 cut(s) | 339, 424 |
| TaaI | ACNGT | 2 cut(s) | 293, 300 |
| TaiI | ACGT | 2 cut(s) | 9, 569 |
| TasI | AATT | 3 cut(s) | 19, 89, 229 |
| TauI | GCSGC | 1 cut(s) | 547 |
| TfiI | GAWTC | 1 cut(s) | 458 |
| Tru1I | TTAA | 3 cut(s) | 68, 129, 321 |
| Tru9I | TTAA | 3 cut(s) | 68, 129, 321 |
| TscAI | CASTG | 1 cut(s) | 180 |
| TseFI | GTSAC | 1 cut(s) | 72 |
| TseI | GCWGC | 2 cut(s) | 145, 239 |
| Tsp45I | GTSAC | 1 cut(s) | 72 |
| TspDTI | ATGAA | 5 cut(s) | 17, 198, 339, 384, 482 |
| TspGWI | ACGGA | 2 cut(s) | 450, 515 |
| TspRI | CASTG | 1 cut(s) | 180 |
| VpaK11BI | GGWCC | 1 cut(s) | 421 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 46 |
| XspI | CTAG | 4 cut(s) | 48, 104, 216, 549 |