ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 463 |
| AciI | CCGC | 1 cut(s) | 320 |
| AclWI | GGATC | 3 cut(s) | 363, 434, 774 |
| AcoI | YGGCCR | 1 cut(s) | 331 |
| AcsI | RAATTY | 1 cut(s) | 548 |
| AcuI | CTGAAG | 3 cut(s) | 86, 243, 942 |
| AcyI | GRCGYC | 1 cut(s) | 464 |
| AfaI | GTAC | 2 cut(s) | 610, 647 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 405, 828 |
| AgsI | TTSAA | 6 cut(s) | 143, 238, 404, 547, 554, 757 |
| AjiI | CACGTC | 1 cut(s) | 841 |
| AleI | CACNNNNGTG | 1 cut(s) | 281 |
| AluBI | AGCT | 8 cut(s) | 21, 148, 241, 370, 386, 524, 721, 959 |
| AluI | AGCT | 8 cut(s) | 21, 148, 241, 370, 386, 524, 721, 959 |
| Alw26I | GTCTC | 3 cut(s) | 107, 305, 307 |
| AlwI | GGATC | 3 cut(s) | 363, 434, 774 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 64 |
| AoxI | GGCC | 3 cut(s) | 208, 331, 527 |
| ApeKI | GCWGC | 4 cut(s) | 367, 565, 568, 956 |
| ApoI | RAATTY | 1 cut(s) | 548 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 256, 909 |
| AspA2I | CCTAGG | 1 cut(s) | 211 |
| AspLEI | GCGC | 2 cut(s) | 265, 466 |
| AspS9I | GGNCC | 1 cut(s) | 208 |
| AsuC2I | CCSGG | 1 cut(s) | 353 |
| AsuHPI | GGTGA | 3 cut(s) | 302, 359, 604 |
| AsuNHI | GCTAGC | 1 cut(s) | 520 |
| AvrII | CCTAGG | 1 cut(s) | 211 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 600, 633 |
| BalI | TGGCCA | 1 cut(s) | 333 |
| BanI | GGYRCC | 1 cut(s) | 463 |
| BanII | GRGCYC | 1 cut(s) | 219 |
| BbsI | GAAGAC | 1 cut(s) | 141 |
| BbvI | GCAGC | 4 cut(s) | 379, 552, 580, 968 |
| BccI | CCATC | 2 cut(s) | 658, 679 |
| BclI | TGATCA | 1 cut(s) | 478 |
| BcnI | CCSGG | 1 cut(s) | 353 |
| BcoDI | GTCTC | 3 cut(s) | 107, 305, 307 |
| BfaI | CTAG | 6 cut(s) | 51, 212, 383, 447, 521, 525 |
| BfmI | CTRYAG | 1 cut(s) | 566 |
| BfoI | RGCGCY | 1 cut(s) | 467 |
| BisI | GCNGC | 4 cut(s) | 368, 566, 569, 957 |
| BlnI | CCTAGG | 1 cut(s) | 211 |
| BlsI | GCNGC | 4 cut(s) | 369, 567, 570, 958 |
| Bme1390I | CCNGG | 1 cut(s) | 353 |
| BmgBI | CACGTC | 1 cut(s) | 841 |
| BmgT120I | GGNCC | 1 cut(s) | 208 |
| BmiI | GGNNCC | 3 cut(s) | 209, 253, 465 |
| BmrFI | CCNGG | 1 cut(s) | 353 |
| BmsI | GCATC | 5 cut(s) | 37, 274, 399, 856, 925 |
| BmtI | GCTAGC | 1 cut(s) | 524 |
| BoxI | GACNNNNGTC | 1 cut(s) | 297 |
| BpiI | GAAGAC | 1 cut(s) | 141 |
| BpuMI | CCSGG | 1 cut(s) | 353 |
| BsaBI | GATNNNNATC | 2 cut(s) | 431, 477 |
| BsaHI | GRCGYC | 1 cut(s) | 464 |
| BsaI | GGTCTC | 1 cut(s) | 305 |
| BsaJI | CCNNGG | 1 cut(s) | 211 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 405, 828 |
| Bse1I | ACTGG | 3 cut(s) | 301, 321, 349 |
| Bse3DI | GCAATG | 1 cut(s) | 945 |
| Bse8I | GATNNNNATC | 2 cut(s) | 431, 477 |
| BseDI | CCNNGG | 1 cut(s) | 211 |
| BseGI | GGATG | 3 cut(s) | 414, 619, 949 |
| BseJI | GATNNNNATC | 2 cut(s) | 431, 477 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 405, 828 |
| BseMI | GCAATG | 1 cut(s) | 945 |
| BseMII | CTCAG | 4 cut(s) | 71, 95, 163, 969 |
| BseNI | ACTGG | 3 cut(s) | 301, 321, 349 |
| BseRI | GAGGAG | 1 cut(s) | 644 |
| BseXI | GCAGC | 4 cut(s) | 379, 552, 580, 968 |
| BseYI | CCCAGC | 1 cut(s) | 203 |
| BshFI | GGCC | 3 cut(s) | 210, 333, 529 |
| BshNI | GGYRCC | 1 cut(s) | 463 |
| BsiSI | CCGG | 1 cut(s) | 352 |
| BslFI | GGGAC | 2 cut(s) | 210, 497 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 405, 828 |
| BsmAI | GTCTC | 3 cut(s) | 107, 305, 307 |
| BsmFI | GGGAC | 2 cut(s) | 210, 497 |
| BsmI | GAATGC | 1 cut(s) | 994 |
| BsnI | GGCC | 3 cut(s) | 210, 333, 529 |
| Bso31I | GGTCTC | 1 cut(s) | 305 |
| Bsp1286I | GDGCHC | 1 cut(s) | 219 |
| Bsp143I | GATC | 4 cut(s) | 355, 426, 478, 766 |
| BspACI | CCGC | 1 cut(s) | 320 |
| BspANI | GGCC | 3 cut(s) | 210, 333, 529 |
| BspCNI | CTCAG | 4 cut(s) | 70, 94, 162, 970 |
| BspLI | GGNNCC | 3 cut(s) | 209, 253, 465 |
| BspMAI | CTGCAG | 1 cut(s) | 570 |
| BspOI | GCTAGC | 1 cut(s) | 524 |
| BspPI | GGATC | 3 cut(s) | 363, 434, 774 |
| BspT107I | GGYRCC | 1 cut(s) | 463 |
| BspTNI | GGTCTC | 1 cut(s) | 305 |
| BsrDI | GCAATG | 1 cut(s) | 945 |
| BsrI | ACTGG | 3 cut(s) | 301, 321, 349 |
| BssECI | CCNNGG | 1 cut(s) | 211 |
| BssMI | GATC | 4 cut(s) | 355, 426, 478, 766 |
| BssNI | GRCGYC | 1 cut(s) | 464 |
| BssT1I | CCWWGG | 1 cut(s) | 211 |
| Bst4CI | ACNGT | 1 cut(s) | 280 |
| BstACI | GRCGYC | 1 cut(s) | 464 |
| BstC8I | GCNNGC | 1 cut(s) | 522 |
| BstDEI | CTNAG | 7 cut(s) | 17, 57, 81, 149, 531, 978, 993 |
| BstEII | GGTNACC | 1 cut(s) | 347 |
| BstF5I | GGATG | 3 cut(s) | 414, 619, 949 |
| BstH2I | RGCGCY | 1 cut(s) | 467 |
| BstHHI | GCGC | 2 cut(s) | 265, 466 |
| BstKTI | GATC | 4 cut(s) | 358, 429, 481, 769 |
| BstMAI | GTCTC | 3 cut(s) | 107, 305, 307 |
| BstMBI | GATC | 4 cut(s) | 355, 426, 478, 766 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 27, 526, 989 |
| BstNSI | RCATGY | 1 cut(s) | 176 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 297 |
| BstPI | GGTNACC | 1 cut(s) | 347 |
| BstSCI | CCNGG | 1 cut(s) | 351 |
| BstSFI | CTRYAG | 1 cut(s) | 566 |
| BstV1I | GCAGC | 4 cut(s) | 379, 552, 580, 968 |
| BstV2I | GAAGAC | 1 cut(s) | 141 |
| BsuRI | GGCC | 3 cut(s) | 210, 333, 529 |
| BtgZI | GCGATG | 1 cut(s) | 524 |
| BtrI | CACGTC | 1 cut(s) | 841 |
| BtsCI | GGATG | 3 cut(s) | 414, 619, 949 |
| BtsIMutI | CAGTG | 2 cut(s) | 62, 294 |
| Cac8I | GCNNGC | 1 cut(s) | 522 |
| CaiI | CAGNNNCTG | 1 cut(s) | 64 |
| CfoI | GCGC | 2 cut(s) | 265, 466 |
| Cfr13I | GGNCC | 1 cut(s) | 208 |
| Csp6I | GTAC | 2 cut(s) | 609, 646 |
| CviAII | CATG | 7 cut(s) | 173, 335, 443, 482, 572, 750, 845 |
| CviQI | GTAC | 2 cut(s) | 609, 646 |
| DdeI | CTNAG | 7 cut(s) | 17, 57, 81, 149, 531, 978, 993 |
| DinI | GGCGCC | 1 cut(s) | 465 |
| DpnI | GATC | 4 cut(s) | 357, 428, 480, 768 |
| DpnII | GATC | 4 cut(s) | 355, 426, 478, 766 |
| EaeI | YGGCCR | 1 cut(s) | 331 |
| Eco130I | CCWWGG | 1 cut(s) | 211 |
| Eco147I | AGGCCT | 1 cut(s) | 529 |
| Eco24I | GRGCYC | 1 cut(s) | 219 |
| Eco31I | GGTCTC | 1 cut(s) | 305 |
| Eco57I | CTGAAG | 3 cut(s) | 86, 243, 942 |
| Eco91I | GGTNACC | 1 cut(s) | 347 |
| EcoO109I | RGGNCCY | 1 cut(s) | 208 |
| EcoO65I | GGTNACC | 1 cut(s) | 347 |
| EcoT14I | CCWWGG | 1 cut(s) | 211 |
| EcoT38I | GRGCYC | 1 cut(s) | 219 |
| EgeI | GGCGCC | 1 cut(s) | 465 |
| EheI | GGCGCC | 1 cut(s) | 465 |
| ErhI | CCWWGG | 1 cut(s) | 211 |
| FaeI | CATG | 7 cut(s) | 176, 338, 446, 485, 575, 753, 848 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 806, 838 |
| FaqI | GGGAC | 2 cut(s) | 210, 497 |
| FatI | CATG | 7 cut(s) | 172, 334, 442, 481, 571, 749, 844 |
| FauI | CCCGC | 1 cut(s) | 313 |
| FbaI | TGATCA | 1 cut(s) | 478 |
| Fnu4HI | GCNGC | 4 cut(s) | 368, 566, 569, 957 |
| FokI | GGATG | 3 cut(s) | 421, 626, 956 |
| FriOI | GRGCYC | 1 cut(s) | 219 |
| Fsp4HI | GCNGC | 4 cut(s) | 368, 566, 569, 957 |
| FspBI | CTAG | 6 cut(s) | 51, 212, 383, 447, 521, 525 |
| GlaI | GCGC | 2 cut(s) | 264, 465 |
| GluI | GCNGC | 4 cut(s) | 368, 566, 569, 957 |
| GsaI | CCCAGC | 1 cut(s) | 207 |
| HaeII | RGCGCY | 1 cut(s) | 467 |
| HaeIII | GGCC | 3 cut(s) | 210, 333, 529 |
| HapII | CCGG | 1 cut(s) | 352 |
| HhaI | GCGC | 2 cut(s) | 265, 466 |
| Hin1I | GRCGYC | 1 cut(s) | 464 |
| Hin1II | CATG | 7 cut(s) | 176, 338, 446, 485, 575, 753, 848 |
| Hin6I | GCGC | 2 cut(s) | 263, 464 |
| HinP1I | GCGC | 2 cut(s) | 263, 464 |
| HindIII | AAGCTT | 1 cut(s) | 239 |
| HinfI | GANTC | 5 cut(s) | 4, 85, 395, 473, 949 |
| HpaII | CCGG | 1 cut(s) | 352 |
| HphI | GGTGA | 3 cut(s) | 302, 359, 604 |
| Hpy166II | GTNNAC | 2 cut(s) | 92, 646 |
| Hpy188I | TCNGA | 6 cut(s) | 84, 472, 478, 655, 771, 922 |
| Hpy188III | TCNNGA | 3 cut(s) | 8, 195, 621 |
| Hpy8I | GTNNAC | 2 cut(s) | 92, 646 |
| HpyAV | CCTTC | 6 cut(s) | 61, 410, 477, 589, 670, 755 |
| HpyCH4III | ACNGT | 1 cut(s) | 280 |
| HpyCH4IV | ACGT | 1 cut(s) | 840 |
| HpyCH4V | TGCA | 8 cut(s) | 30, 42, 170, 338, 568, 664, 844, 938 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 27, 526, 989 |
| HpyF3I | CTNAG | 7 cut(s) | 17, 57, 81, 149, 531, 978, 993 |
| HpySE526I | ACGT | 1 cut(s) | 840 |
| Hsp92I | GRCGYC | 1 cut(s) | 464 |
| Hsp92II | CATG | 7 cut(s) | 176, 338, 446, 485, 575, 753, 848 |
| HspAI | GCGC | 2 cut(s) | 263, 464 |
| KasI | GGCGCC | 1 cut(s) | 463 |
| Ksp22I | TGATCA | 1 cut(s) | 478 |
| Kzo9I | GATC | 4 cut(s) | 355, 426, 478, 766 |
| Lsp1109I | GCAGC | 4 cut(s) | 379, 552, 580, 968 |
| LweI | GCATC | 5 cut(s) | 37, 274, 399, 856, 925 |
| MaeI | CTAG | 6 cut(s) | 51, 212, 383, 447, 521, 525 |
| MaeII | ACGT | 1 cut(s) | 840 |
| MaeIII | GTNAC | 7 cut(s) | 290, 347, 377, 745, 886, 946, 973 |
| MalI | GATC | 4 cut(s) | 357, 428, 480, 768 |
| MboI | GATC | 4 cut(s) | 355, 426, 478, 766 |
| MboII | GAAGA | 1 cut(s) | 146 |
| MhlI | GDGCHC | 1 cut(s) | 219 |
| MlsI | TGGCCA | 1 cut(s) | 333 |
| MluCI | AATT | 5 cut(s) | 25, 95, 388, 548, 700 |
| MluNI | TGGCCA | 1 cut(s) | 333 |
| Mly113I | GGCGCC | 1 cut(s) | 464 |
| MlyI | GAGTC | 1 cut(s) | 943 |
| Mox20I | TGGCCA | 1 cut(s) | 333 |
| MroXI | GAANNNNTTC | 2 cut(s) | 256, 909 |
| MscI | TGGCCA | 1 cut(s) | 333 |
| MseI | TTAA | 1 cut(s) | 497 |
| MslI | CAYNNNNRTG | 3 cut(s) | 177, 281, 861 |
| Msp20I | TGGCCA | 1 cut(s) | 333 |
| MspI | CCGG | 1 cut(s) | 352 |
| MspR9I | CCNGG | 1 cut(s) | 353 |
| Mva1269I | GAATGC | 1 cut(s) | 994 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 27, 526, 989 |
| NarI | GGCGCC | 1 cut(s) | 464 |
| NciI | CCSGG | 1 cut(s) | 353 |
| NdeII | GATC | 4 cut(s) | 355, 426, 478, 766 |
| NheI | GCTAGC | 1 cut(s) | 520 |
| NlaIII | CATG | 7 cut(s) | 176, 338, 446, 485, 575, 753, 848 |
| NlaIV | GGNNCC | 3 cut(s) | 209, 253, 465 |
| NmuCI | GTSAC | 5 cut(s) | 290, 347, 377, 745, 946 |
| NspI | RCATGY | 1 cut(s) | 176 |
| OliI | CACNNNNGTG | 1 cut(s) | 281 |
| PceI | AGGCCT | 1 cut(s) | 529 |
| PctI | GAATGC | 1 cut(s) | 994 |
| PdmI | GAANNNNTTC | 2 cut(s) | 256, 909 |
| PfeI | GAWTC | 4 cut(s) | 4, 85, 395, 473 |
| PkrI | GCNGC | 4 cut(s) | 369, 567, 570, 958 |
| PleI | GAGTC | 1 cut(s) | 943 |
| PluTI | GGCGCC | 1 cut(s) | 467 |
| PpsI | GAGTC | 1 cut(s) | 943 |
| PshAI | GACNNNNGTC | 1 cut(s) | 297 |
| PspEI | GGTNACC | 1 cut(s) | 347 |
| PspFI | CCCAGC | 1 cut(s) | 203 |
| PspN4I | GGNNCC | 3 cut(s) | 209, 253, 465 |
| PspPI | GGNCC | 1 cut(s) | 208 |
| PstI | CTGCAG | 1 cut(s) | 570 |
| PstNI | CAGNNNCTG | 1 cut(s) | 64 |
| RsaI | GTAC | 2 cut(s) | 610, 647 |
| RsaNI | GTAC | 2 cut(s) | 609, 646 |
| RseI | CAYNNNNRTG | 3 cut(s) | 177, 281, 861 |
| SaqAI | TTAA | 1 cut(s) | 497 |
| SatI | GCNGC | 4 cut(s) | 368, 566, 569, 957 |
| Sau3AI | GATC | 4 cut(s) | 355, 426, 478, 766 |
| Sau96I | GGNCC | 1 cut(s) | 208 |
| SchI | GAGTC | 1 cut(s) | 943 |
| ScrFI | CCNGG | 1 cut(s) | 353 |
| SduI | GDGCHC | 1 cut(s) | 219 |
| SfaNI | GCATC | 5 cut(s) | 37, 274, 399, 856, 925 |
| SfcI | CTRYAG | 1 cut(s) | 566 |
| SfoI | GGCGCC | 1 cut(s) | 465 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 177, 281, 861 |
| Sse9I | AATT | 5 cut(s) | 25, 95, 388, 548, 700 |
| SseBI | AGGCCT | 1 cut(s) | 529 |
| SsiI | CCGC | 1 cut(s) | 320 |
| SspDI | GGCGCC | 1 cut(s) | 463 |
| SspMI | CTAG | 6 cut(s) | 51, 212, 383, 447, 521, 525 |
| StuI | AGGCCT | 1 cut(s) | 529 |
| StyD4I | CCNGG | 1 cut(s) | 351 |
| StyI | CCWWGG | 1 cut(s) | 211 |
| TaaI | ACNGT | 1 cut(s) | 280 |
| TaiI | ACGT | 1 cut(s) | 843 |
| TaqI | TCGA | 3 cut(s) | 429, 790, 913 |
| TasI | AATT | 5 cut(s) | 25, 95, 388, 548, 700 |
| TfiI | GAWTC | 4 cut(s) | 4, 85, 395, 473 |
| Tru1I | TTAA | 1 cut(s) | 497 |
| Tru9I | TTAA | 1 cut(s) | 497 |
| TscAI | CASTG | 2 cut(s) | 69, 301 |
| TseFI | GTSAC | 5 cut(s) | 290, 347, 377, 745, 946 |
| TseI | GCWGC | 4 cut(s) | 367, 565, 568, 956 |
| Tsp45I | GTSAC | 5 cut(s) | 290, 347, 377, 745, 946 |
| TspDTI | ATGAA | 6 cut(s) | 17, 233, 428, 446, 686, 776 |
| TspGWI | ACGGA | 2 cut(s) | 365, 626 |
| TspRI | CASTG | 2 cut(s) | 69, 301 |
| XapI | RAATTY | 1 cut(s) | 548 |
| XceI | RCATGY | 1 cut(s) | 176 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 341 |
| XmaJI | CCTAGG | 1 cut(s) | 211 |
| XmnI | GAANNNNTTC | 2 cut(s) | 256, 909 |
| XspI | CTAG | 6 cut(s) | 51, 212, 383, 447, 521, 525 |