Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 194 |
| Acc36I | ACCTGC | 2 cut(s) | 194, 305 |
| AccI | GTMKAC | 1 cut(s) | 701 |
| AciI | CCGC | 1 cut(s) | 747 |
| AclWI | GGATC | 6 cut(s) | 18, 78, 547, 701, 703, 716 |
| AcsI | RAATTY | 1 cut(s) | 418 |
| AcuI | CTGAAG | 1 cut(s) | 463 |
| AfaI | GTAC | 2 cut(s) | 457, 667 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 57 |
| AgsI | TTSAA | 4 cut(s) | 25, 67, 283, 742 |
| AjnI | CCWGG | 2 cut(s) | 378, 410 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 374, 406 |
| AluBI | AGCT | 3 cut(s) | 359, 449, 715 |
| AluI | AGCT | 3 cut(s) | 359, 449, 715 |
| Alw26I | GTCTC | 4 cut(s) | 107, 270, 419, 430 |
| AlwI | GGATC | 6 cut(s) | 18, 78, 547, 701, 703, 716 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 763 |
| ApoI | RAATTY | 1 cut(s) | 418 |
| AspA2I | CCTAGG | 1 cut(s) | 385 |
| AspS9I | GGNCC | 3 cut(s) | 317, 382, 496 |
| AsuC2I | CCSGG | 2 cut(s) | 395, 773 |
| AsuHPI | GGTGA | 2 cut(s) | 418, 646 |
| AsuII | TTCGAA | 1 cut(s) | 594 |
| AsuNHI | GCTAGC | 1 cut(s) | 545 |
| AvaII | GGWCC | 3 cut(s) | 317, 382, 496 |
| AvrII | CCTAGG | 1 cut(s) | 385 |
| AxyI | CCTNAGG | 1 cut(s) | 56 |
| BaeGI | GKGCMC | 1 cut(s) | 653 |
| BamHI | GGATCC | 1 cut(s) | 708 |
| BanII | GRGCYC | 1 cut(s) | 160 |
| BccI | CCATC | 3 cut(s) | 469, 507, 517 |
| BciT130I | CCWGG | 2 cut(s) | 380, 412 |
| BclI | TGATCA | 1 cut(s) | 520 |
| BcnI | CCSGG | 2 cut(s) | 395, 773 |
| BcoDI | GTCTC | 4 cut(s) | 107, 270, 419, 430 |
| BfaI | CTAG | 8 cut(s) | 161, 386, 546, 617, 705, 777, 782, 794 |
| BfmI | CTRYAG | 1 cut(s) | 242 |
| BfuAI | ACCTGC | 2 cut(s) | 194, 305 |
| BlnI | CCTAGG | 1 cut(s) | 385 |
| Bme1390I | CCNGG | 4 cut(s) | 380, 395, 412, 773 |
| Bme18I | GGWCC | 3 cut(s) | 317, 382, 496 |
| BmgT120I | GGNCC | 3 cut(s) | 317, 382, 496 |
| BmiI | GGNNCC | 3 cut(s) | 392, 608, 710 |
| BmrFI | CCNGG | 4 cut(s) | 380, 395, 412, 773 |
| BmsI | GCATC | 3 cut(s) | 37, 330, 750 |
| BmtI | GCTAGC | 1 cut(s) | 549 |
| Bpu10I | CCTNAGC | 1 cut(s) | 489 |
| Bpu14I | TTCGAA | 1 cut(s) | 594 |
| BpuMI | CCSGG | 2 cut(s) | 395, 773 |
| BsaAI | YACGTR | 1 cut(s) | 152 |
| BsaBI | GATNNNNATC | 2 cut(s) | 9, 519 |
| BsaJI | CCNNGG | 3 cut(s) | 260, 385, 394 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 57 |
| Bse21I | CCTNAGG | 1 cut(s) | 56 |
| Bse8I | GATNNNNATC | 2 cut(s) | 9, 519 |
| BseBI | CCWGG | 2 cut(s) | 380, 412 |
| BseDI | CCNNGG | 3 cut(s) | 260, 385, 394 |
| BseJI | GATNNNNATC | 2 cut(s) | 9, 519 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 57 |
| BseMII | CTCAG | 3 cut(s) | 31, 107, 425 |
| BseRI | GAGGAG | 1 cut(s) | 703 |
| BseSI | GKGCMC | 1 cut(s) | 653 |
| BseYI | CCCAGC | 1 cut(s) | 763 |
| Bsh1285I | CGRYCG | 1 cut(s) | 572 |
| BsiEI | CGRYCG | 1 cut(s) | 572 |
| BsiSI | CCGG | 2 cut(s) | 394, 772 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 57 |
| BsmAI | GTCTC | 4 cut(s) | 107, 270, 419, 430 |
| Bsp119I | TTCGAA | 1 cut(s) | 594 |
| Bsp1286I | GDGCHC | 2 cut(s) | 160, 653 |
| Bsp143I | GATC | 8 cut(s) | 10, 70, 373, 442, 520, 552, 693, 708 |
| Bsp19I | CCATGG | 1 cut(s) | 260 |
| BspACI | CCGC | 1 cut(s) | 747 |
| BspCNI | CTCAG | 3 cut(s) | 30, 106, 426 |
| BspLI | GGNNCC | 3 cut(s) | 392, 608, 710 |
| BspMI | ACCTGC | 2 cut(s) | 194, 305 |
| BspOI | GCTAGC | 1 cut(s) | 549 |
| BspPI | GGATC | 6 cut(s) | 18, 78, 547, 701, 703, 716 |
| BspT104I | TTCGAA | 1 cut(s) | 594 |
| BssECI | CCNNGG | 3 cut(s) | 260, 385, 394 |
| BssMI | GATC | 8 cut(s) | 10, 70, 373, 442, 520, 552, 693, 708 |
| BssNAI | GTATAC | 1 cut(s) | 702 |
| BssT1I | CCWWGG | 2 cut(s) | 260, 385 |
| Bst1107I | GTATAC | 1 cut(s) | 702 |
| Bst2UI | CCWGG | 2 cut(s) | 380, 412 |
| Bst4CI | ACNGT | 1 cut(s) | 371 |
| BstBAI | YACGTR | 1 cut(s) | 152 |
| BstBI | TTCGAA | 1 cut(s) | 594 |
| BstC8I | GCNNGC | 2 cut(s) | 201, 547 |
| BstDEI | CTNAG | 6 cut(s) | 17, 56, 93, 188, 434, 489 |
| BstDSI | CCRYGG | 1 cut(s) | 260 |
| BstEII | GGTNACC | 1 cut(s) | 406 |
| BstKTI | GATC | 8 cut(s) | 13, 73, 376, 445, 523, 555, 696, 711 |
| BstMAI | GTCTC | 4 cut(s) | 107, 270, 419, 430 |
| BstMBI | GATC | 8 cut(s) | 10, 70, 373, 442, 520, 552, 693, 708 |
| BstMCI | CGRYCG | 1 cut(s) | 572 |
| BstNI | CCWGG | 2 cut(s) | 380, 412 |
| BstNSI | RCATGY | 1 cut(s) | 545 |
| BstPI | GGTNACC | 1 cut(s) | 406 |
| BstSCI | CCNGG | 4 cut(s) | 378, 393, 410, 771 |
| BstSFI | CTRYAG | 1 cut(s) | 242 |
| BstSLI | GKGCMC | 1 cut(s) | 653 |
| BstSNI | TACGTA | 1 cut(s) | 152 |
| BstX2I | RGATCY | 3 cut(s) | 10, 70, 708 |
| BstYI | RGATCY | 3 cut(s) | 10, 70, 708 |
| BstZ17I | GTATAC | 1 cut(s) | 702 |
| Bsu36I | CCTNAGG | 1 cut(s) | 56 |
| BtgI | CCRYGG | 1 cut(s) | 260 |
| BtsIMutI | CAGTG | 1 cut(s) | 651 |
| BveI | ACCTGC | 2 cut(s) | 194, 305 |
| Cac8I | GCNNGC | 2 cut(s) | 201, 547 |
| CaiI | CAGNNNCTG | 1 cut(s) | 763 |
| Cfr13I | GGNCC | 3 cut(s) | 317, 382, 496 |
| CsiI | ACCWGGT | 1 cut(s) | 410 |
| Csp6I | GTAC | 2 cut(s) | 456, 666 |
| CviAII | CATG | 7 cut(s) | 173, 261, 465, 485, 542, 550, 697 |
| CviQI | GTAC | 2 cut(s) | 456, 666 |
| DdeI | CTNAG | 6 cut(s) | 17, 56, 93, 188, 434, 489 |
| DpnI | GATC | 8 cut(s) | 12, 72, 375, 444, 522, 554, 695, 710 |
| DpnII | GATC | 8 cut(s) | 10, 70, 373, 442, 520, 552, 693, 708 |
| Eco105I | TACGTA | 1 cut(s) | 152 |
| Eco130I | CCWWGG | 2 cut(s) | 260, 385 |
| Eco24I | GRGCYC | 1 cut(s) | 160 |
| Eco32I | GATATC | 1 cut(s) | 475 |
| Eco47I | GGWCC | 3 cut(s) | 317, 382, 496 |
| Eco57I | CTGAAG | 1 cut(s) | 463 |
| Eco81I | CCTNAGG | 1 cut(s) | 56 |
| Eco91I | GGTNACC | 1 cut(s) | 406 |
| EcoO109I | RGGNCCY | 1 cut(s) | 317 |
| EcoO65I | GGTNACC | 1 cut(s) | 406 |
| EcoRI | GAATTC | 1 cut(s) | 418 |
| EcoRII | CCWGG | 2 cut(s) | 378, 410 |
| EcoRV | GATATC | 1 cut(s) | 475 |
| EcoT14I | CCWWGG | 2 cut(s) | 260, 385 |
| EcoT22I | ATGCAT | 1 cut(s) | 174 |
| EcoT38I | GRGCYC | 1 cut(s) | 160 |
| ErhI | CCWWGG | 2 cut(s) | 260, 385 |
| FaeI | CATG | 7 cut(s) | 176, 264, 468, 488, 545, 553, 700 |
| FatI | CATG | 7 cut(s) | 172, 260, 464, 484, 541, 549, 696 |
| FbaI | TGATCA | 1 cut(s) | 520 |
| FblI | GTMKAC | 1 cut(s) | 701 |
| FriOI | GRGCYC | 1 cut(s) | 160 |
| FspBI | CTAG | 8 cut(s) | 161, 386, 546, 617, 705, 777, 782, 794 |
| GsaI | CCCAGC | 1 cut(s) | 767 |
| HapII | CCGG | 2 cut(s) | 394, 772 |
| Hin1II | CATG | 7 cut(s) | 176, 264, 468, 488, 545, 553, 700 |
| HindIII | AAGCTT | 1 cut(s) | 357 |
| HinfI | GANTC | 5 cut(s) | 145, 251, 515, 565, 768 |
| HpaII | CCGG | 2 cut(s) | 394, 772 |
| HphI | GGTGA | 2 cut(s) | 418, 646 |
| Hpy166II | GTNNAC | 4 cut(s) | 456, 496, 668, 702 |
| Hpy188I | TCNGA | 5 cut(s) | 96, 424, 435, 514, 520 |
| Hpy188III | TCNNGA | 4 cut(s) | 40, 142, 292, 617 |
| Hpy8I | GTNNAC | 4 cut(s) | 456, 496, 668, 702 |
| HpyAV | CCTTC | 5 cut(s) | 61, 188, 339, 610, 631 |
| HpyCH4III | ACNGT | 1 cut(s) | 371 |
| HpyCH4IV | ACGT | 2 cut(s) | 151, 737 |
| HpyCH4V | TGCA | 3 cut(s) | 172, 314, 757 |
| HpyF3I | CTNAG | 6 cut(s) | 17, 56, 93, 188, 434, 489 |
| HpySE526I | ACGT | 2 cut(s) | 151, 737 |
| Hsp92II | CATG | 7 cut(s) | 176, 264, 468, 488, 545, 553, 700 |
| Ksp22I | TGATCA | 1 cut(s) | 520 |
| Kzo9I | GATC | 8 cut(s) | 10, 70, 373, 442, 520, 552, 693, 708 |
| LmnI | GCTCC | 1 cut(s) | 612 |
| LweI | GCATC | 3 cut(s) | 37, 330, 750 |
| MabI | ACCWGGT | 1 cut(s) | 410 |
| MaeI | CTAG | 8 cut(s) | 161, 386, 546, 617, 705, 777, 782, 794 |
| MaeII | ACGT | 2 cut(s) | 151, 737 |
| MaeIII | GTNAC | 1 cut(s) | 406 |
| MalI | GATC | 8 cut(s) | 12, 72, 375, 444, 522, 554, 695, 710 |
| MboI | GATC | 8 cut(s) | 10, 70, 373, 442, 520, 552, 693, 708 |
| MboII | GAAGA | 3 cut(s) | 469, 742, 797 |
| MflI | RGATCY | 3 cut(s) | 10, 70, 708 |
| MhlI | GDGCHC | 2 cut(s) | 160, 653 |
| MluCI | AATT | 3 cut(s) | 25, 418, 788 |
| MlyI | GAGTC | 2 cut(s) | 245, 559 |
| MmeI | TCCRAC | 2 cut(s) | 634, 640 |
| MnlI | CCTC | 7 cut(s) | 102, 124, 172, 567, 656, 681, 684 |
| Mph1103I | ATGCAT | 1 cut(s) | 174 |
| MseI | TTAA | 1 cut(s) | 588 |
| MslI | CAYNNNNRTG | 1 cut(s) | 259 |
| MspA1I | CMGCKG | 1 cut(s) | 715 |
| MspI | CCGG | 2 cut(s) | 394, 772 |
| MspR9I | CCNGG | 4 cut(s) | 380, 395, 412, 773 |
| MvaI | CCWGG | 2 cut(s) | 380, 412 |
| NciI | CCSGG | 2 cut(s) | 395, 773 |
| NcoI | CCATGG | 1 cut(s) | 260 |
| NdeII | GATC | 8 cut(s) | 10, 70, 373, 442, 520, 552, 693, 708 |
| NheI | GCTAGC | 1 cut(s) | 545 |
| NlaIII | CATG | 7 cut(s) | 176, 264, 468, 488, 545, 553, 700 |
| NlaIV | GGNNCC | 3 cut(s) | 392, 608, 710 |
| NmuCI | GTSAC | 1 cut(s) | 406 |
| NsiI | ATGCAT | 1 cut(s) | 174 |
| NspI | RCATGY | 1 cut(s) | 545 |
| NspV | TTCGAA | 1 cut(s) | 594 |
| PaqCI | CACCTGC | 1 cut(s) | 194 |
| PfeI | GAWTC | 3 cut(s) | 145, 515, 768 |
| PfoI | TCCNGGA | 1 cut(s) | 378 |
| PleI | GAGTC | 2 cut(s) | 245, 559 |
| PpsI | GAGTC | 2 cut(s) | 245, 559 |
| Ppu21I | YACGTR | 1 cut(s) | 152 |
| PpuMI | RGGWCCY | 1 cut(s) | 317 |
| Psp5II | RGGWCCY | 1 cut(s) | 317 |
| Psp6I | CCWGG | 2 cut(s) | 378, 410 |
| PspEI | GGTNACC | 1 cut(s) | 406 |
| PspFI | CCCAGC | 1 cut(s) | 763 |
| PspGI | CCWGG | 2 cut(s) | 378, 410 |
| PspN4I | GGNNCC | 3 cut(s) | 392, 608, 710 |
| PspPI | GGNCC | 3 cut(s) | 317, 382, 496 |
| PspPPI | RGGWCCY | 1 cut(s) | 317 |
| PstNI | CAGNNNCTG | 1 cut(s) | 763 |
| PsuI | RGATCY | 3 cut(s) | 10, 70, 708 |
| PvuII | CAGCTG | 1 cut(s) | 715 |
| RsaI | GTAC | 2 cut(s) | 457, 667 |
| RsaNI | GTAC | 2 cut(s) | 456, 666 |
| RseI | CAYNNNNRTG | 1 cut(s) | 259 |
| SaqAI | TTAA | 1 cut(s) | 588 |
| Sau3AI | GATC | 8 cut(s) | 10, 70, 373, 442, 520, 552, 693, 708 |
| Sau96I | GGNCC | 3 cut(s) | 317, 382, 496 |
| SchI | GAGTC | 2 cut(s) | 245, 559 |
| ScrFI | CCNGG | 4 cut(s) | 380, 395, 412, 773 |
| SduI | GDGCHC | 2 cut(s) | 160, 653 |
| SexAI | ACCWGGT | 1 cut(s) | 410 |
| SfaNI | GCATC | 3 cut(s) | 37, 330, 750 |
| SfcI | CTRYAG | 1 cut(s) | 242 |
| SfuI | TTCGAA | 1 cut(s) | 594 |
| SinI | GGWCC | 3 cut(s) | 317, 382, 496 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 259 |
| SnaBI | TACGTA | 1 cut(s) | 152 |
| Sse9I | AATT | 3 cut(s) | 25, 418, 788 |
| SsiI | CCGC | 1 cut(s) | 747 |
| SspMI | CTAG | 8 cut(s) | 161, 386, 546, 617, 705, 777, 782, 794 |
| StyD4I | CCNGG | 4 cut(s) | 378, 393, 410, 771 |
| StyI | CCWWGG | 2 cut(s) | 260, 385 |
| TaaI | ACNGT | 1 cut(s) | 371 |
| TaiI | ACGT | 2 cut(s) | 154, 740 |
| TaqI | TCGA | 5 cut(s) | 141, 445, 568, 594, 686 |
| TaqII | GACCGA | 1 cut(s) | 586 |
| TasI | AATT | 3 cut(s) | 25, 418, 788 |
| TfiI | GAWTC | 3 cut(s) | 145, 515, 768 |
| Tru1I | TTAA | 1 cut(s) | 588 |
| Tru9I | TTAA | 1 cut(s) | 588 |
| TscAI | CASTG | 1 cut(s) | 658 |
| TseFI | GTSAC | 1 cut(s) | 406 |
| Tsp45I | GTSAC | 1 cut(s) | 406 |
| TspDTI | ATGAA | 1 cut(s) | 642 |
| TspRI | CASTG | 1 cut(s) | 658 |
| VpaK11BI | GGWCC | 3 cut(s) | 317, 382, 496 |
| XapI | RAATTY | 1 cut(s) | 418 |
| XbaI | TCTAGA | 1 cut(s) | 616 |
| XceI | RCATGY | 1 cut(s) | 545 |
| XmaJI | CCTAGG | 1 cut(s) | 385 |
| XmiI | GTMKAC | 1 cut(s) | 701 |
| XspI | CTAG | 8 cut(s) | 161, 386, 546, 617, 705, 777, 782, 794 |
| Zsp2I | ATGCAT | 1 cut(s) | 174 |