ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 4 - 180 | 4.6e-12 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 440 |
| Acc16I | TGCGCA | 1 cut(s) | 165 |
| Acc36I | ACCTGC | 1 cut(s) | 440 |
| AccB1I | GGYRCC | 1 cut(s) | 327 |
| AciI | CCGC | 2 cut(s) | 148, 201 |
| AclWI | GGATC | 1 cut(s) | 421 |
| AcoI | YGGCCR | 1 cut(s) | 454 |
| AcsI | RAATTY | 2 cut(s) | 114, 713 |
| AcuI | CTGAAG | 1 cut(s) | 489 |
| AfaI | GTAC | 1 cut(s) | 187 |
| AflIII | ACRYGT | 1 cut(s) | 175 |
| AgsI | TTSAA | 5 cut(s) | 61, 137, 370, 704, 734 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 225 |
| AjnI | CCWGG | 1 cut(s) | 289 |
| AluBI | AGCT | 3 cut(s) | 473, 631, 754 |
| AluI | AGCT | 3 cut(s) | 473, 631, 754 |
| Alw21I | GWGCWC | 1 cut(s) | 626 |
| AlwI | GGATC | 1 cut(s) | 421 |
| AoxI | GGCC | 2 cut(s) | 83, 454 |
| ApeKI | GCWGC | 1 cut(s) | 643 |
| ApoI | RAATTY | 2 cut(s) | 114, 713 |
| AspLEI | GCGC | 1 cut(s) | 166 |
| AspS9I | GGNCC | 1 cut(s) | 287 |
| AsuC2I | CCSGG | 2 cut(s) | 239, 458 |
| AsuHPI | GGTGA | 3 cut(s) | 305, 452, 574 |
| AvaII | GGWCC | 1 cut(s) | 287 |
| BaeGI | GKGCMC | 1 cut(s) | 330 |
| BanI | GGYRCC | 1 cut(s) | 327 |
| Bbv12I | GWGCWC | 1 cut(s) | 626 |
| BbvI | GCAGC | 1 cut(s) | 630 |
| BceAI | ACGGC | 1 cut(s) | 382 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 13, 47, 470, 504 |
| BciT130I | CCWGG | 1 cut(s) | 291 |
| BclI | TGATCA | 1 cut(s) | 658 |
| BcnI | CCSGG | 2 cut(s) | 239, 458 |
| BfaI | CTAG | 4 cut(s) | 155, 333, 755, 817 |
| BfuAI | ACCTGC | 1 cut(s) | 440 |
| BisI | GCNGC | 1 cut(s) | 644 |
| BlsI | GCNGC | 1 cut(s) | 645 |
| BmcAI | AGTACT | 1 cut(s) | 187 |
| Bme1390I | CCNGG | 3 cut(s) | 239, 291, 458 |
| Bme18I | GGWCC | 1 cut(s) | 287 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 225 |
| BmgT120I | GGNCC | 1 cut(s) | 287 |
| BmiI | GGNNCC | 2 cut(s) | 329, 725 |
| BmrFI | CCNGG | 3 cut(s) | 239, 291, 458 |
| BmrI | ACTGGG | 1 cut(s) | 198 |
| BmsI | GCATC | 2 cut(s) | 468, 754 |
| BmuI | ACTGGG | 1 cut(s) | 198 |
| BoxI | GACNNNNGTC | 1 cut(s) | 569 |
| BpuEI | CTTGAG | 1 cut(s) | 202 |
| BpuMI | CCSGG | 2 cut(s) | 239, 458 |
| Bsa29I | ATCGAT | 1 cut(s) | 267 |
| BsaJI | CCNNGG | 3 cut(s) | 45, 398, 498 |
| BsaWI | WCCGGW | 1 cut(s) | 726 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 26, 779, 809 |
| Bse118I | RCCGGY | 1 cut(s) | 81 |
| Bse1I | ACTGG | 2 cut(s) | 193, 538 |
| BseBI | CCWGG | 1 cut(s) | 291 |
| BseCI | ATCGAT | 1 cut(s) | 267 |
| BseDI | CCNNGG | 3 cut(s) | 45, 398, 498 |
| BseGI | GGATG | 1 cut(s) | 764 |
| BseMII | CTCAG | 1 cut(s) | 488 |
| BseNI | ACTGG | 2 cut(s) | 193, 538 |
| BseSI | GKGCMC | 1 cut(s) | 330 |
| BseXI | GCAGC | 1 cut(s) | 630 |
| BsgI | GTGCAG | 2 cut(s) | 128, 708 |
| BshFI | GGCC | 2 cut(s) | 85, 456 |
| BshNI | GGYRCC | 1 cut(s) | 327 |
| BshVI | ATCGAT | 1 cut(s) | 267 |
| BsiHKAI | GWGCWC | 1 cut(s) | 626 |
| BsiSI | CCGG | 4 cut(s) | 82, 238, 457, 727 |
| BsnI | GGCC | 2 cut(s) | 85, 456 |
| Bsp1286I | GDGCHC | 2 cut(s) | 330, 626 |
| Bsp143I | GATC | 5 cut(s) | 124, 343, 382, 426, 658 |
| BspACI | CCGC | 2 cut(s) | 148, 201 |
| BspANI | GGCC | 2 cut(s) | 85, 456 |
| BspCNI | CTCAG | 1 cut(s) | 487 |
| BspDI | ATCGAT | 1 cut(s) | 267 |
| BspLI | GGNNCC | 2 cut(s) | 329, 725 |
| BspMI | ACCTGC | 1 cut(s) | 440 |
| BspPI | GGATC | 1 cut(s) | 421 |
| BspT107I | GGYRCC | 1 cut(s) | 327 |
| BsrFI | RCCGGY | 1 cut(s) | 81 |
| BsrI | ACTGG | 2 cut(s) | 193, 538 |
| BssAI | RCCGGY | 1 cut(s) | 81 |
| BssECI | CCNNGG | 3 cut(s) | 45, 398, 498 |
| BssMI | GATC | 5 cut(s) | 124, 343, 382, 426, 658 |
| BssT1I | CCWWGG | 1 cut(s) | 498 |
| Bst2UI | CCWGG | 1 cut(s) | 291 |
| Bst4CI | ACNGT | 3 cut(s) | 49, 584, 807 |
| Bst6I | CTCTTC | 1 cut(s) | 334 |
| BstC8I | GCNNGC | 1 cut(s) | 152 |
| BstDEI | CTNAG | 4 cut(s) | 474, 567, 627, 677 |
| BstDSI | CCRYGG | 2 cut(s) | 45, 398 |
| BstEII | GGTNACC | 1 cut(s) | 293 |
| BstF5I | GGATG | 1 cut(s) | 764 |
| BstHHI | GCGC | 1 cut(s) | 166 |
| BstKTI | GATC | 5 cut(s) | 127, 346, 385, 429, 661 |
| BstMBI | GATC | 5 cut(s) | 124, 343, 382, 426, 658 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 151 |
| BstNI | CCWGG | 1 cut(s) | 291 |
| BstNSI | RCATGY | 1 cut(s) | 179 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 569 |
| BstPI | GGTNACC | 1 cut(s) | 293 |
| BstSCI | CCNGG | 3 cut(s) | 237, 289, 456 |
| BstSLI | GKGCMC | 1 cut(s) | 330 |
| BstV1I | GCAGC | 1 cut(s) | 630 |
| BstX2I | RGATCY | 1 cut(s) | 426 |
| BstYI | RGATCY | 1 cut(s) | 426 |
| Bsu15I | ATCGAT | 1 cut(s) | 267 |
| BsuRI | GGCC | 2 cut(s) | 85, 456 |
| BsuTUI | ATCGAT | 1 cut(s) | 267 |
| BtgI | CCRYGG | 2 cut(s) | 45, 398 |
| BtsCI | GGATG | 1 cut(s) | 764 |
| BtsI | GCAGTG | 2 cut(s) | 31, 696 |
| BtsIMutI | CAGTG | 3 cut(s) | 31, 691, 696 |
| BveI | ACCTGC | 1 cut(s) | 440 |
| Cac8I | GCNNGC | 1 cut(s) | 152 |
| CfoI | GCGC | 1 cut(s) | 166 |
| Cfr10I | RCCGGY | 1 cut(s) | 81 |
| Cfr13I | GGNCC | 1 cut(s) | 287 |
| ClaI | ATCGAT | 1 cut(s) | 267 |
| CseI | GACGC | 1 cut(s) | 588 |
| Csp6I | GTAC | 1 cut(s) | 186 |
| CviAII | CATG | 6 cut(s) | 53, 167, 176, 357, 549, 779 |
| CviJI | RGCY | 7 cut(s) | 85, 456, 473, 497, 577, 631, 754 |
| CviKI_1 | RGCY | 7 cut(s) | 85, 456, 473, 497, 577, 631, 754 |
| CviQI | GTAC | 1 cut(s) | 186 |
| DdeI | CTNAG | 4 cut(s) | 474, 567, 627, 677 |
| DpnI | GATC | 5 cut(s) | 126, 345, 384, 428, 660 |
| DpnII | GATC | 5 cut(s) | 124, 343, 382, 426, 658 |
| DriI | GACNNNNNGTC | 1 cut(s) | 225 |
| EaeI | YGGCCR | 1 cut(s) | 454 |
| Eam1104I | CTCTTC | 1 cut(s) | 334 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 225 |
| EarI | CTCTTC | 1 cut(s) | 334 |
| EciI | GGCGGA | 1 cut(s) | 216 |
| Eco130I | CCWWGG | 1 cut(s) | 498 |
| Eco47I | GGWCC | 1 cut(s) | 287 |
| Eco57I | CTGAAG | 1 cut(s) | 489 |
| Eco91I | GGTNACC | 1 cut(s) | 293 |
| EcoO65I | GGTNACC | 1 cut(s) | 293 |
| EcoRII | CCWGG | 1 cut(s) | 289 |
| EcoT14I | CCWWGG | 1 cut(s) | 498 |
| ErhI | CCWWGG | 1 cut(s) | 498 |
| FaeI | CATG | 6 cut(s) | 56, 170, 179, 360, 552, 782 |
| FatI | CATG | 6 cut(s) | 52, 166, 175, 356, 548, 778 |
| FbaI | TGATCA | 1 cut(s) | 658 |
| Fnu4HI | GCNGC | 1 cut(s) | 644 |
| FokI | GGATG | 1 cut(s) | 771 |
| Fsp4HI | GCNGC | 1 cut(s) | 644 |
| FspBI | CTAG | 4 cut(s) | 155, 333, 755, 817 |
| FspI | TGCGCA | 1 cut(s) | 165 |
| GlaI | GCGC | 1 cut(s) | 165 |
| GluI | GCNGC | 1 cut(s) | 644 |
| HaeIII | GGCC | 2 cut(s) | 85, 456 |
| HapII | CCGG | 4 cut(s) | 82, 238, 457, 727 |
| HgaI | GACGC | 1 cut(s) | 588 |
| HhaI | GCGC | 1 cut(s) | 166 |
| Hin1II | CATG | 6 cut(s) | 56, 170, 179, 360, 552, 782 |
| Hin6I | GCGC | 1 cut(s) | 164 |
| HinP1I | GCGC | 1 cut(s) | 164 |
| HindIII | AAGCTT | 1 cut(s) | 629 |
| HinfI | GANTC | 3 cut(s) | 248, 389, 557 |
| HpaII | CCGG | 4 cut(s) | 82, 238, 457, 727 |
| HphI | GGTGA | 3 cut(s) | 305, 452, 574 |
| Hpy166II | GTNNAC | 1 cut(s) | 531 |
| Hpy188I | TCNGA | 4 cut(s) | 231, 477, 610, 658 |
| Hpy188III | TCNNGA | 8 cut(s) | 128, 181, 217, 386, 467, 491, 718, 801 |
| Hpy8I | GTNNAC | 1 cut(s) | 531 |
| HpyAV | CCTTC | 4 cut(s) | 51, 96, 364, 440 |
| HpyCH4III | ACNGT | 3 cut(s) | 49, 584, 807 |
| HpyCH4IV | ACGT | 1 cut(s) | 234 |
| HpyCH4V | TGCA | 6 cut(s) | 24, 145, 481, 509, 689, 748 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 151 |
| HpyF3I | CTNAG | 4 cut(s) | 474, 567, 627, 677 |
| HpySE526I | ACGT | 1 cut(s) | 234 |
| Hsp92II | CATG | 6 cut(s) | 56, 170, 179, 360, 552, 782 |
| HspAI | GCGC | 1 cut(s) | 164 |
| Ksp22I | TGATCA | 1 cut(s) | 658 |
| Kzo9I | GATC | 5 cut(s) | 124, 343, 382, 426, 658 |
| LmnI | GCTCC | 2 cut(s) | 552, 751 |
| Lsp1109I | GCAGC | 1 cut(s) | 630 |
| LweI | GCATC | 2 cut(s) | 468, 754 |
| MaeI | CTAG | 4 cut(s) | 155, 333, 755, 817 |
| MaeII | ACGT | 1 cut(s) | 234 |
| MaeIII | GTNAC | 3 cut(s) | 293, 403, 562 |
| MalI | GATC | 5 cut(s) | 126, 345, 384, 428, 660 |
| MboI | GATC | 5 cut(s) | 124, 343, 382, 426, 658 |
| MboII | GAAGA | 6 cut(s) | 182, 243, 348, 351, 626, 665 |
| MflI | RGATCY | 1 cut(s) | 426 |
| MhlI | GDGCHC | 2 cut(s) | 330, 626 |
| MluCI | AATT | 4 cut(s) | 19, 114, 276, 713 |
| MlyI | GAGTC | 2 cut(s) | 383, 551 |
| MmeI | TCCRAC | 1 cut(s) | 799 |
| MnlI | CCTC | 2 cut(s) | 217, 714 |
| MseI | TTAA | 1 cut(s) | 420 |
| MslI | CAYNNNNRTG | 1 cut(s) | 438 |
| MspI | CCGG | 4 cut(s) | 82, 238, 457, 727 |
| MspR9I | CCNGG | 3 cut(s) | 239, 291, 458 |
| MvaI | CCWGG | 1 cut(s) | 291 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 151 |
| NciI | CCSGG | 2 cut(s) | 239, 458 |
| NdeII | GATC | 5 cut(s) | 124, 343, 382, 426, 658 |
| NlaIII | CATG | 6 cut(s) | 56, 170, 179, 360, 552, 782 |
| NlaIV | GGNNCC | 2 cut(s) | 329, 725 |
| NmuCI | GTSAC | 3 cut(s) | 293, 403, 562 |
| NsbI | TGCGCA | 1 cut(s) | 165 |
| NspI | RCATGY | 1 cut(s) | 179 |
| PaqCI | CACCTGC | 1 cut(s) | 440 |
| PciI | ACATGT | 1 cut(s) | 175 |
| PfeI | GAWTC | 1 cut(s) | 248 |
| PkrI | GCNGC | 1 cut(s) | 645 |
| PleI | GAGTC | 2 cut(s) | 383, 551 |
| PpsI | GAGTC | 2 cut(s) | 383, 551 |
| PscI | ACATGT | 1 cut(s) | 175 |
| PshAI | GACNNNNGTC | 1 cut(s) | 569 |
| Psp6I | CCWGG | 1 cut(s) | 289 |
| PspEI | GGTNACC | 1 cut(s) | 293 |
| PspGI | CCWGG | 1 cut(s) | 289 |
| PspN4I | GGNNCC | 2 cut(s) | 329, 725 |
| PspPI | GGNCC | 1 cut(s) | 287 |
| PsuI | RGATCY | 1 cut(s) | 426 |
| RsaI | GTAC | 1 cut(s) | 187 |
| RsaNI | GTAC | 1 cut(s) | 186 |
| RseI | CAYNNNNRTG | 1 cut(s) | 438 |
| SaqAI | TTAA | 1 cut(s) | 420 |
| SatI | GCNGC | 1 cut(s) | 644 |
| Sau3AI | GATC | 5 cut(s) | 124, 343, 382, 426, 658 |
| Sau96I | GGNCC | 1 cut(s) | 287 |
| ScaI | AGTACT | 1 cut(s) | 187 |
| SchI | GAGTC | 2 cut(s) | 383, 551 |
| ScrFI | CCNGG | 3 cut(s) | 239, 291, 458 |
| SduI | GDGCHC | 2 cut(s) | 330, 626 |
| SfaNI | GCATC | 2 cut(s) | 468, 754 |
| SinI | GGWCC | 1 cut(s) | 287 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 438 |
| SmlI | CTYRAG | 1 cut(s) | 181 |
| SmoI | CTYRAG | 1 cut(s) | 181 |
| Sse9I | AATT | 4 cut(s) | 19, 114, 276, 713 |
| SsiI | CCGC | 2 cut(s) | 148, 201 |
| SspMI | CTAG | 4 cut(s) | 155, 333, 755, 817 |
| StyD4I | CCNGG | 3 cut(s) | 237, 289, 456 |
| StyI | CCWWGG | 1 cut(s) | 498 |
| TaaI | ACNGT | 3 cut(s) | 49, 584, 807 |
| TaiI | ACGT | 1 cut(s) | 237 |
| TaqI | TCGA | 3 cut(s) | 127, 267, 346 |
| TasI | AATT | 4 cut(s) | 19, 114, 276, 713 |
| TatI | WGTACW | 1 cut(s) | 185 |
| TfiI | GAWTC | 1 cut(s) | 248 |
| Tru1I | TTAA | 1 cut(s) | 420 |
| Tru9I | TTAA | 1 cut(s) | 420 |
| TscAI | CASTG | 3 cut(s) | 31, 691, 696 |
| TseFI | GTSAC | 3 cut(s) | 293, 403, 562 |
| TseI | GCWGC | 1 cut(s) | 643 |
| Tsp45I | GTSAC | 3 cut(s) | 293, 403, 562 |
| TspDTI | ATGAA | 5 cut(s) | 41, 183, 345, 422, 795 |
| TspGWI | ACGGA | 1 cut(s) | 236 |
| TspRI | CASTG | 3 cut(s) | 31, 691, 696 |
| VpaK11BI | GGWCC | 1 cut(s) | 287 |
| XapI | RAATTY | 2 cut(s) | 114, 713 |
| XceI | RCATGY | 1 cut(s) | 179 |
| XspI | CTAG | 4 cut(s) | 155, 333, 755, 817 |
| ZrmI | AGTACT | 1 cut(s) | 187 |