ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 26 - 190 | 8.8e-48 | TIR domain |
| TIR_2 | PF13676 | 28 - 124 | 5.3e-12 | TIR domain |
| NB-ARC | PF00931 | 217 - 375 | 1e-18 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 444 - 510 | 1.1e-14 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_13 | PF23286 | 703 - 786 | 2.3e-08 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 727 - 784 | 2.4e-06 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 723, 887 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3137 |
| Acc16I | TGCGCA | 1 cut(s) | 420 |
| AccI | GTMKAC | 1 cut(s) | 616 |
| AccII | CGCG | 1 cut(s) | 3064 |
| AciI | CCGC | 6 cut(s) | 587, 648, 1454, 1998, 2157, 2498 |
| AclI | AACGTT | 2 cut(s) | 177, 2706 |
| AclWI | GGATC | 4 cut(s) | 167, 301, 979, 1083 |
| AcoI | YGGCCR | 1 cut(s) | 2616 |
| AcsI | RAATTY | 8 cut(s) | 118, 240, 1966, 1981, 2320, 2460, 2699, 2783 |
| AcuI | CTGAAG | 2 cut(s) | 1084, 2745 |
| AfaI | GTAC | 4 cut(s) | 564, 1167, 1172, 1996 |
| AfeI | AGCGCT | 1 cut(s) | 142 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 381, 910, 1123, 1450 |
| AflIII | ACRYGT | 1 cut(s) | 2921 |
| AjnI | CCWGG | 4 cut(s) | 682, 759, 1176, 2716 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2712, 2744 |
| Alw21I | GWGCWC | 2 cut(s) | 1098, 3087 |
| Alw26I | GTCTC | 3 cut(s) | 615, 2334, 2593 |
| Alw44I | GTGCAC | 1 cut(s) | 3083 |
| AlwI | GGATC | 4 cut(s) | 167, 301, 979, 1083 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2602, 2723 |
| Aor51HI | AGCGCT | 1 cut(s) | 142 |
| AoxI | GGCC | 6 cut(s) | 205, 680, 796, 1180, 1781, 2616 |
| ApaLI | GTGCAC | 1 cut(s) | 3083 |
| ApoI | RAATTY | 8 cut(s) | 118, 240, 1966, 1981, 2320, 2460, 2699, 2783 |
| AseI | ATTAAT | 2 cut(s) | 1031, 1467 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 37 |
| AspLEI | GCGC | 6 cut(s) | 143, 421, 787, 2879, 3064, 3066 |
| AspS9I | GGNCC | 3 cut(s) | 206, 680, 1180 |
| AsuC2I | CCSGG | 1 cut(s) | 209 |
| AsuHPI | GGTGA | 5 cut(s) | 46, 313, 416, 1468, 3116 |
| AsuII | TTCGAA | 2 cut(s) | 744, 1797 |
| BaeGI | GKGCMC | 1 cut(s) | 3087 |
| BalI | TGGCCA | 1 cut(s) | 2618 |
| BanII | GRGCYC | 1 cut(s) | 1098 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2631, 2663 |
| BauI | CACGAG | 1 cut(s) | 800 |
| BbsI | GAAGAC | 1 cut(s) | 1566 |
| Bbv12I | GWGCWC | 2 cut(s) | 1098, 3087 |
| BccI | CCATC | 4 cut(s) | 276, 1250, 2167, 2219 |
| BceAI | ACGGC | 1 cut(s) | 2052 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1716, 1750 |
| BciT130I | CCWGG | 4 cut(s) | 684, 761, 1178, 2718 |
| BciVI | GTATCC | 3 cut(s) | 100, 1448, 1733 |
| BclI | TGATCA | 1 cut(s) | 2568 |
| BcnI | CCSGG | 1 cut(s) | 209 |
| BcoDI | GTCTC | 3 cut(s) | 615, 2334, 2593 |
| BfaI | CTAG | 3 cut(s) | 3048, 3089, 3150 |
| BfmI | CTRYAG | 3 cut(s) | 1230, 2443, 2856 |
| BfoI | RGCGCY | 1 cut(s) | 144 |
| BfuI | GTATCC | 3 cut(s) | 100, 1448, 1733 |
| BglII | AGATCT | 2 cut(s) | 1226, 2194 |
| Bme1390I | CCNGG | 5 cut(s) | 209, 684, 761, 1178, 2718 |
| BmgT120I | GGNCC | 3 cut(s) | 206, 680, 1180 |
| BmiI | GGNNCC | 4 cut(s) | 34, 186, 386, 681 |
| BmrFI | CCNGG | 5 cut(s) | 209, 684, 761, 1178, 2718 |
| BmrI | ACTGGG | 1 cut(s) | 1880 |
| BmsI | GCATC | 8 cut(s) | 1150, 1303, 1422, 1479, 1736, 2054, 2246, 2439 |
| BmuI | ACTGGG | 1 cut(s) | 1880 |
| BpiI | GAAGAC | 1 cut(s) | 1566 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 448, 480 |
| BpmI | CTGGAG | 2 cut(s) | 524, 987 |
| Bpu14I | TTCGAA | 2 cut(s) | 744, 1797 |
| BpuEI | CTTGAG | 2 cut(s) | 2165, 2474 |
| BpuMI | CCSGG | 1 cut(s) | 209 |
| BsaAI | YACGTR | 2 cut(s) | 620, 2438 |
| BsaI | GGTCTC | 1 cut(s) | 2334 |
| BsaJI | CCNNGG | 7 cut(s) | 310, 1176, 1177, 1823, 2341, 3052, 3100 |
| BsaWI | WCCGGW | 1 cut(s) | 595 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 497, 527, 786, 816, 2712, 2742 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 381, 910, 1123, 1450 |
| Bse1I | ACTGG | 3 cut(s) | 1155, 1875, 2768 |
| Bse3DI | GCAATG | 2 cut(s) | 874, 2872 |
| BseBI | CCWGG | 4 cut(s) | 684, 761, 1178, 2718 |
| BseDI | CCNNGG | 7 cut(s) | 310, 1176, 1177, 1823, 2341, 3052, 3100 |
| BseGI | GGATG | 8 cut(s) | 320, 658, 831, 1494, 1698, 2069, 2178, 2454 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 381, 910, 1123, 1450 |
| BseMI | GCAATG | 2 cut(s) | 874, 2872 |
| BseMII | CTCAG | 4 cut(s) | 380, 989, 1224, 1855 |
| BseNI | ACTGG | 3 cut(s) | 1155, 1875, 2768 |
| BsePI | GCGCGC | 1 cut(s) | 3062 |
| BseRI | GAGGAG | 1 cut(s) | 1250 |
| BseSI | GKGCMC | 1 cut(s) | 3087 |
| BsgI | GTGCAG | 2 cut(s) | 2400, 2862 |
| Bsh1236I | CGCG | 1 cut(s) | 3064 |
| BshFI | GGCC | 6 cut(s) | 207, 682, 798, 1182, 1783, 2618 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1098, 3087 |
| BsiSI | CCGG | 3 cut(s) | 209, 596, 2202 |
| BslFI | GGGAC | 3 cut(s) | 1522, 2375, 2834 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 381, 910, 1123, 1450 |
| BsmAI | GTCTC | 3 cut(s) | 615, 2334, 2593 |
| BsmFI | GGGAC | 3 cut(s) | 1522, 2375, 2834 |
| BsmI | GAATGC | 2 cut(s) | 2145, 2898 |
| BsnI | GGCC | 6 cut(s) | 207, 682, 798, 1182, 1783, 2618 |
| Bso31I | GGTCTC | 1 cut(s) | 2334 |
| Bsp119I | TTCGAA | 2 cut(s) | 744, 1797 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1098, 3087 |
| BspACI | CCGC | 6 cut(s) | 587, 648, 1454, 1998, 2157, 2498 |
| BspANI | GGCC | 6 cut(s) | 207, 682, 798, 1182, 1783, 2618 |
| BspCNI | CTCAG | 4 cut(s) | 381, 988, 1223, 1854 |
| BspFNI | CGCG | 1 cut(s) | 3064 |
| BspHI | TCATGA | 1 cut(s) | 1081 |
| BspLI | GGNNCC | 4 cut(s) | 34, 186, 386, 681 |
| BspMAI | CTGCAG | 1 cut(s) | 2447 |
| BspPI | GGATC | 4 cut(s) | 167, 301, 979, 1083 |
| BspQI | GCTCTTC | 1 cut(s) | 1103 |
| BspT104I | TTCGAA | 2 cut(s) | 744, 1797 |
| BspTNI | GGTCTC | 1 cut(s) | 2334 |
| BsrDI | GCAATG | 2 cut(s) | 874, 2872 |
| BsrI | ACTGG | 3 cut(s) | 1155, 1875, 2768 |
| BssECI | CCNNGG | 7 cut(s) | 310, 1176, 1177, 1823, 2341, 3052, 3100 |
| BssHII | GCGCGC | 1 cut(s) | 3062 |
| BssNAI | GTATAC | 1 cut(s) | 617 |
| BssSI | CACGAG | 1 cut(s) | 800 |
| BssT1I | CCWWGG | 3 cut(s) | 2341, 3052, 3100 |
| Bst1107I | GTATAC | 1 cut(s) | 617 |
| Bst2BI | CACGAG | 1 cut(s) | 800 |
| Bst2UI | CCWGG | 4 cut(s) | 684, 761, 1178, 2718 |
| Bst4CI | ACNGT | 8 cut(s) | 883, 951, 1170, 1395, 1721, 1994, 2586, 2604 |
| Bst6I | CTCTTC | 6 cut(s) | 49, 225, 1103, 2250, 2298, 2625 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 416, 1160 |
| BstBAI | YACGTR | 2 cut(s) | 620, 2438 |
| BstBI | TTCGAA | 2 cut(s) | 744, 1797 |
| BstC8I | GCNNGC | 4 cut(s) | 1681, 1785, 2690, 3064 |
| BstDEI | CTNAG | 9 cut(s) | 89, 389, 975, 1210, 1433, 1841, 2079, 2126, 2191 |
| BstF5I | GGATG | 8 cut(s) | 320, 658, 831, 1494, 1698, 2069, 2178, 2454 |
| BstFNI | CGCG | 1 cut(s) | 3064 |
| BstH2I | RGCGCY | 1 cut(s) | 144 |
| BstHHI | GCGC | 6 cut(s) | 143, 421, 787, 2879, 3064, 3066 |
| BstMAI | GTCTC | 3 cut(s) | 615, 2334, 2593 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 416, 1151, 1160, 1199, 2187, 2840, 2885, 3072 |
| BstNI | CCWGG | 4 cut(s) | 684, 761, 1178, 2718 |
| BstNSI | RCATGY | 3 cut(s) | 584, 1359, 1864 |
| BstSCI | CCNGG | 5 cut(s) | 207, 682, 759, 1176, 2716 |
| BstSFI | CTRYAG | 3 cut(s) | 1230, 2443, 2856 |
| BstSLI | GKGCMC | 1 cut(s) | 3087 |
| BstUI | CGCG | 1 cut(s) | 3064 |
| BstV2I | GAAGAC | 1 cut(s) | 1566 |
| BstX2I | RGATCY | 5 cut(s) | 159, 306, 971, 1226, 2194 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 16, 2626 |
| BstYI | RGATCY | 5 cut(s) | 159, 306, 971, 1226, 2194 |
| BstZ17I | GTATAC | 1 cut(s) | 617 |
| BsuI | GTATCC | 3 cut(s) | 100, 1448, 1733 |
| BsuRI | GGCC | 6 cut(s) | 207, 682, 798, 1182, 1783, 2618 |
| BtgZI | GCGATG | 1 cut(s) | 1336 |
| BtsCI | GGATG | 8 cut(s) | 320, 658, 831, 1494, 1698, 2069, 2178, 2454 |
| BtsI | GCAGTG | 2 cut(s) | 2205, 2850 |
| BtsIMutI | CAGTG | 4 cut(s) | 983, 2205, 2582, 2850 |
| Cac8I | GCNNGC | 4 cut(s) | 1681, 1785, 2690, 3064 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2602, 2723 |
| CciI | TCATGA | 1 cut(s) | 1081 |
| CfoI | GCGC | 6 cut(s) | 143, 421, 787, 2879, 3064, 3066 |
| Cfr13I | GGNCC | 3 cut(s) | 206, 680, 1180 |
| Csp6I | GTAC | 4 cut(s) | 563, 1166, 1171, 1995 |
| CviQI | GTAC | 4 cut(s) | 563, 1166, 1171, 1995 |
| DdeI | CTNAG | 9 cut(s) | 89, 389, 975, 1210, 1433, 1841, 2079, 2126, 2191 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3137 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3137 |
| EaeI | YGGCCR | 1 cut(s) | 2616 |
| Eam1104I | CTCTTC | 6 cut(s) | 49, 225, 1103, 2250, 2298, 2625 |
| EarI | CTCTTC | 6 cut(s) | 49, 225, 1103, 2250, 2298, 2625 |
| EciI | GGCGGA | 1 cut(s) | 602 |
| Ecl136II | GAGCTC | 1 cut(s) | 1096 |
| Eco130I | CCWWGG | 3 cut(s) | 2341, 3052, 3100 |
| Eco147I | AGGCCT | 1 cut(s) | 798 |
| Eco24I | GRGCYC | 1 cut(s) | 1098 |
| Eco31I | GGTCTC | 1 cut(s) | 2334 |
| Eco47III | AGCGCT | 1 cut(s) | 142 |
| Eco53kI | GAGCTC | 1 cut(s) | 1096 |
| Eco57I | CTGAAG | 2 cut(s) | 1084, 2745 |
| EcoICRI | GAGCTC | 1 cut(s) | 1096 |
| EcoO109I | RGGNCCY | 2 cut(s) | 680, 1180 |
| EcoRI | GAATTC | 1 cut(s) | 2699 |
| EcoRII | CCWGG | 4 cut(s) | 682, 759, 1176, 2716 |
| EcoT14I | CCWWGG | 3 cut(s) | 2341, 3052, 3100 |
| EcoT22I | ATGCAT | 2 cut(s) | 1318, 1729 |
| EcoT38I | GRGCYC | 1 cut(s) | 1098 |
| ErhI | CCWWGG | 3 cut(s) | 2341, 3052, 3100 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1329, 1361 |
| FaqI | GGGAC | 3 cut(s) | 1522, 2375, 2834 |
| FauI | CCCGC | 2 cut(s) | 641, 2164 |
| FauNDI | CATATG | 1 cut(s) | 76 |
| FbaI | TGATCA | 1 cut(s) | 2568 |
| FblI | GTMKAC | 1 cut(s) | 616 |
| FokI | GGATG | 8 cut(s) | 327, 665, 818, 1501, 1705, 2076, 2185, 2461 |
| FriOI | GRGCYC | 1 cut(s) | 1098 |
| FspBI | CTAG | 3 cut(s) | 3048, 3089, 3150 |
| FspI | TGCGCA | 1 cut(s) | 420 |
| GlaI | GCGC | 6 cut(s) | 142, 420, 786, 2878, 3063, 3065 |
| GsuI | CTGGAG | 2 cut(s) | 524, 987 |
| HaeII | RGCGCY | 1 cut(s) | 144 |
| HaeIII | GGCC | 6 cut(s) | 207, 682, 798, 1182, 1783, 2618 |
| HapII | CCGG | 3 cut(s) | 209, 596, 2202 |
| HhaI | GCGC | 6 cut(s) | 143, 421, 787, 2879, 3064, 3066 |
| Hin6I | GCGC | 6 cut(s) | 141, 419, 785, 2877, 3062, 3064 |
| HinP1I | GCGC | 6 cut(s) | 141, 419, 785, 2877, 3062, 3064 |
| HincII | GTYRAC | 4 cut(s) | 152, 544, 2262, 2992 |
| HindII | GTYRAC | 4 cut(s) | 152, 544, 2262, 2992 |
| HindIII | AAGCTT | 5 cut(s) | 1086, 1681, 1829, 2039, 2188 |
| HpaI | GTTAAC | 2 cut(s) | 2262, 2992 |
| HpaII | CCGG | 3 cut(s) | 209, 596, 2202 |
| HphI | GGTGA | 5 cut(s) | 46, 313, 416, 1468, 3116 |
| Hpy166II | GTNNAC | 8 cut(s) | 152, 544, 617, 1528, 1588, 2262, 2992, 3085 |
| Hpy8I | GTNNAC | 8 cut(s) | 152, 544, 617, 1528, 1588, 2262, 2992, 3085 |
| HpyAV | CCTTC | 5 cut(s) | 48, 178, 866, 1193, 2235 |
| HpyCH4III | ACNGT | 8 cut(s) | 883, 951, 1170, 1395, 1721, 1994, 2586, 2604 |
| HpyCH4IV | ACGT | 6 cut(s) | 177, 619, 2363, 2437, 2706, 2923 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 416, 1151, 1160, 1199, 2187, 2840, 2885, 3072 |
| HpyF3I | CTNAG | 9 cut(s) | 89, 389, 975, 1210, 1433, 1841, 2079, 2126, 2191 |
| HpySE526I | ACGT | 6 cut(s) | 177, 619, 2363, 2437, 2706, 2923 |
| HspAI | GCGC | 6 cut(s) | 141, 419, 785, 2877, 3062, 3064 |
| Ksp22I | TGATCA | 1 cut(s) | 2568 |
| KspAI | GTTAAC | 2 cut(s) | 2262, 2992 |
| LguI | GCTCTTC | 1 cut(s) | 1103 |
| LmnI | GCTCC | 1 cut(s) | 2720 |
| LweI | GCATC | 8 cut(s) | 1150, 1303, 1422, 1479, 1736, 2054, 2246, 2439 |
| MaeI | CTAG | 3 cut(s) | 3048, 3089, 3150 |
| MaeII | ACGT | 6 cut(s) | 177, 619, 2363, 2437, 2706, 2923 |
| MaeIII | GTNAC | 8 cut(s) | 19, 1103, 1395, 1863, 2276, 2359, 2659, 3031 |
| MfeI | CAATTG | 4 cut(s) | 705, 1108, 1155, 2160 |
| MflI | RGATCY | 5 cut(s) | 159, 306, 971, 1226, 2194 |
| MhlI | GDGCHC | 2 cut(s) | 1098, 3087 |
| MlsI | TGGCCA | 1 cut(s) | 2618 |
| MluNI | TGGCCA | 1 cut(s) | 2618 |
| MlyI | GAGTC | 8 cut(s) | 157, 242, 527, 617, 1148, 1544, 2156, 2567 |
| MmeI | TCCRAC | 1 cut(s) | 2496 |
| Mox20I | TGGCCA | 1 cut(s) | 2618 |
| Mph1103I | ATGCAT | 2 cut(s) | 1318, 1729 |
| MroXI | GAANNNNTTC | 1 cut(s) | 37 |
| MscI | TGGCCA | 1 cut(s) | 2618 |
| MslI | CAYNNNNRTG | 1 cut(s) | 267 |
| Msp20I | TGGCCA | 1 cut(s) | 2618 |
| MspA1I | CMGCKG | 1 cut(s) | 1857 |
| MspI | CCGG | 3 cut(s) | 209, 596, 2202 |
| MspR9I | CCNGG | 5 cut(s) | 209, 684, 761, 1178, 2718 |
| MunI | CAATTG | 4 cut(s) | 705, 1108, 1155, 2160 |
| Mva1269I | GAATGC | 2 cut(s) | 2145, 2898 |
| MvaI | CCWGG | 4 cut(s) | 684, 761, 1178, 2718 |
| MvnI | CGCG | 1 cut(s) | 3064 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 416, 1151, 1160, 1199, 2187, 2840, 2885, 3072 |
| NciI | CCSGG | 1 cut(s) | 209 |
| NdeI | CATATG | 1 cut(s) | 76 |
| NlaIV | GGNNCC | 4 cut(s) | 34, 186, 386, 681 |
| NmuCI | GTSAC | 4 cut(s) | 19, 1863, 2276, 2659 |
| NsbI | TGCGCA | 1 cut(s) | 420 |
| NsiI | ATGCAT | 2 cut(s) | 1318, 1729 |
| NspI | RCATGY | 3 cut(s) | 584, 1359, 1864 |
| NspV | TTCGAA | 2 cut(s) | 744, 1797 |
| PagI | TCATGA | 1 cut(s) | 1081 |
| PasI | CCCWGGG | 1 cut(s) | 1177 |
| PauI | GCGCGC | 1 cut(s) | 3062 |
| PceI | AGGCCT | 1 cut(s) | 798 |
| PciSI | GCTCTTC | 1 cut(s) | 1103 |
| PctI | GAATGC | 2 cut(s) | 2145, 2898 |
| PdmI | GAANNNNTTC | 1 cut(s) | 37 |
| PfeI | GAWTC | 6 cut(s) | 1799, 1881, 2018, 2028, 2094, 2384 |
| PfoI | TCCNGGA | 2 cut(s) | 759, 2716 |
| PleI | GAGTC | 8 cut(s) | 156, 241, 526, 616, 1147, 1543, 2155, 2566 |
| PpsI | GAGTC | 8 cut(s) | 156, 241, 526, 616, 1147, 1543, 2155, 2566 |
| Ppu21I | YACGTR | 2 cut(s) | 620, 2438 |
| PshBI | ATTAAT | 2 cut(s) | 1031, 1467 |
| PsiI | TTATAA | 2 cut(s) | 723, 887 |
| Psp124BI | GAGCTC | 1 cut(s) | 1098 |
| Psp1406I | AACGTT | 2 cut(s) | 177, 2706 |
| Psp6I | CCWGG | 4 cut(s) | 682, 759, 1176, 2716 |
| PspGI | CCWGG | 4 cut(s) | 682, 759, 1176, 2716 |
| PspN4I | GGNNCC | 4 cut(s) | 34, 186, 386, 681 |
| PspPI | GGNCC | 3 cut(s) | 206, 680, 1180 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2908, 2940 |
| PstI | CTGCAG | 1 cut(s) | 2447 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2602, 2723 |
| PsuI | RGATCY | 5 cut(s) | 159, 306, 971, 1226, 2194 |
| PteI | GCGCGC | 1 cut(s) | 3062 |
| PvuII | CAGCTG | 1 cut(s) | 1857 |
| RsaI | GTAC | 4 cut(s) | 564, 1167, 1172, 1996 |
| RsaNI | GTAC | 4 cut(s) | 563, 1166, 1171, 1995 |
| RseI | CAYNNNNRTG | 1 cut(s) | 267 |
| SacI | GAGCTC | 1 cut(s) | 1098 |
| SapI | GCTCTTC | 1 cut(s) | 1103 |
| Sau96I | GGNCC | 3 cut(s) | 206, 680, 1180 |
| SchI | GAGTC | 8 cut(s) | 157, 242, 527, 617, 1148, 1544, 2156, 2567 |
| ScrFI | CCNGG | 5 cut(s) | 209, 684, 761, 1178, 2718 |
| SduI | GDGCHC | 2 cut(s) | 1098, 3087 |
| SfaNI | GCATC | 8 cut(s) | 1150, 1303, 1422, 1479, 1736, 2054, 2246, 2439 |
| SfcI | CTRYAG | 3 cut(s) | 1230, 2443, 2856 |
| SfuI | TTCGAA | 2 cut(s) | 744, 1797 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 267 |
| SmlI | CTYRAG | 2 cut(s) | 2144, 2453 |
| SmoI | CTYRAG | 2 cut(s) | 2144, 2453 |
| SseBI | AGGCCT | 1 cut(s) | 798 |
| SsiI | CCGC | 6 cut(s) | 587, 648, 1454, 1998, 2157, 2498 |
| SspI | AATATT | 4 cut(s) | 769, 960, 2074, 3172 |
| SspMI | CTAG | 3 cut(s) | 3048, 3089, 3150 |
| SstI | GAGCTC | 1 cut(s) | 1098 |
| StuI | AGGCCT | 1 cut(s) | 798 |
| StyD4I | CCNGG | 5 cut(s) | 207, 682, 759, 1176, 2716 |
| StyI | CCWWGG | 3 cut(s) | 2341, 3052, 3100 |
| TaaI | ACNGT | 8 cut(s) | 883, 951, 1170, 1395, 1721, 1994, 2586, 2604 |
| TaiI | ACGT | 6 cut(s) | 180, 622, 2366, 2440, 2709, 2926 |
| TaqI | TCGA | 6 cut(s) | 171, 228, 521, 744, 1797, 3028 |
| TatI | WGTACW | 2 cut(s) | 562, 1165 |
| TauI | GCSGC | 1 cut(s) | 2501 |
| TfiI | GAWTC | 6 cut(s) | 1799, 1881, 2018, 2028, 2094, 2384 |
| TscAI | CASTG | 4 cut(s) | 983, 2212, 2589, 2850 |
| TseFI | GTSAC | 4 cut(s) | 19, 1863, 2276, 2659 |
| Tsp45I | GTSAC | 4 cut(s) | 19, 1863, 2276, 2659 |
| TspGWI | ACGGA | 2 cut(s) | 1705, 3127 |
| TspRI | CASTG | 4 cut(s) | 983, 2212, 2589, 2850 |
| VneI | GTGCAC | 1 cut(s) | 3083 |
| VspI | ATTAAT | 2 cut(s) | 1031, 1467 |
| XapI | RAATTY | 8 cut(s) | 118, 240, 1966, 1981, 2320, 2460, 2699, 2783 |
| XceI | RCATGY | 3 cut(s) | 584, 1359, 1864 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2484 |
| XmiI | GTMKAC | 1 cut(s) | 616 |
| XmnI | GAANNNNTTC | 1 cut(s) | 37 |
| XspI | CTAG | 3 cut(s) | 3048, 3089, 3150 |
| Zsp2I | ATGCAT | 2 cut(s) | 1318, 1729 |