ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 3 cut(s) | 106, 114, 254 |
| AciI | CCGC | 3 cut(s) | 106, 112, 254 |
| AclWI | GGATC | 5 cut(s) | 61, 524, 699, 834, 877 |
| AcsI | RAATTY | 3 cut(s) | 316, 494, 877 |
| AcuI | CTGAAG | 1 cut(s) | 963 |
| AfaI | GTAC | 4 cut(s) | 355, 723, 807, 945 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 159, 160, 163 |
| AflIII | ACRYGT | 1 cut(s) | 966 |
| AgeI | ACCGGT | 1 cut(s) | 836 |
| AgsI | TTSAA | 4 cut(s) | 500, 515, 861, 974 |
| AjiI | CACGTC | 1 cut(s) | 309 |
| AluBI | AGCT | 3 cut(s) | 503, 977, 985 |
| AluI | AGCT | 3 cut(s) | 503, 977, 985 |
| Alw21I | GWGCWC | 1 cut(s) | 49 |
| Alw26I | GTCTC | 4 cut(s) | 61, 168, 317, 998 |
| AlwI | GGATC | 5 cut(s) | 61, 524, 699, 834, 877 |
| AoxI | GGCC | 3 cut(s) | 109, 522, 889 |
| ApeKI | GCWGC | 1 cut(s) | 232 |
| ApoI | RAATTY | 3 cut(s) | 316, 494, 877 |
| AsiGI | ACCGGT | 1 cut(s) | 836 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 10 |
| AspS9I | GGNCC | 1 cut(s) | 109 |
| AsuC2I | CCSGG | 2 cut(s) | 51, 521 |
| AsuHPI | GGTGA | 3 cut(s) | 232, 550, 580 |
| Bbv12I | GWGCWC | 1 cut(s) | 49 |
| BbvI | GCAGC | 1 cut(s) | 244 |
| BccI | CCATC | 2 cut(s) | 206, 492 |
| BclI | TGATCA | 1 cut(s) | 418 |
| BcnI | CCSGG | 2 cut(s) | 51, 521 |
| BcoDI | GTCTC | 4 cut(s) | 61, 168, 317, 998 |
| BfaI | CTAG | 2 cut(s) | 609, 986 |
| BisI | GCNGC | 3 cut(s) | 112, 233, 255 |
| BlpI | GCTNAGC | 1 cut(s) | 228 |
| BlsI | GCNGC | 3 cut(s) | 113, 234, 256 |
| BmcAI | AGTACT | 1 cut(s) | 945 |
| Bme1390I | CCNGG | 2 cut(s) | 51, 521 |
| BmgBI | CACGTC | 1 cut(s) | 309 |
| BmgT120I | GGNCC | 1 cut(s) | 109 |
| BmiI | GGNNCC | 2 cut(s) | 110, 573 |
| BmrFI | CCNGG | 2 cut(s) | 51, 521 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 228 |
| BpuEI | CTTGAG | 2 cut(s) | 707, 756 |
| BpuMI | CCSGG | 2 cut(s) | 51, 521 |
| BsaAI | YACGTR | 2 cut(s) | 131, 440 |
| BsaBI | GATNNNNATC | 2 cut(s) | 417, 472 |
| BsaJI | CCNNGG | 3 cut(s) | 158, 534, 886 |
| BsaWI | WCCGGW | 1 cut(s) | 836 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 159, 160, 163 |
| Bse118I | RCCGGY | 1 cut(s) | 836 |
| Bse8I | GATNNNNATC | 2 cut(s) | 417, 472 |
| BseDI | CCNNGG | 3 cut(s) | 158, 534, 886 |
| BseGI | GGATG | 3 cut(s) | 217, 706, 928 |
| BseJI | GATNNNNATC | 2 cut(s) | 417, 472 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 159, 160, 163 |
| BseMII | CTCAG | 3 cut(s) | 153, 219, 312 |
| BseXI | GCAGC | 1 cut(s) | 244 |
| BshFI | GGCC | 3 cut(s) | 111, 524, 891 |
| BshTI | ACCGGT | 1 cut(s) | 836 |
| BsiHKAI | GWGCWC | 1 cut(s) | 49 |
| BsiSI | CCGG | 3 cut(s) | 50, 521, 837 |
| BslFI | GGGAC | 1 cut(s) | 689 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 159, 160, 163 |
| BsmAI | GTCTC | 4 cut(s) | 61, 168, 317, 998 |
| BsmFI | GGGAC | 1 cut(s) | 689 |
| BsnI | GGCC | 3 cut(s) | 111, 524, 891 |
| Bsp1286I | GDGCHC | 1 cut(s) | 49 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 228 |
| BspACI | CCGC | 3 cut(s) | 106, 112, 254 |
| BspANI | GGCC | 3 cut(s) | 111, 524, 891 |
| BspCNI | CTCAG | 3 cut(s) | 152, 220, 313 |
| BspLI | GGNNCC | 2 cut(s) | 110, 573 |
| BspPI | GGATC | 5 cut(s) | 61, 524, 699, 834, 877 |
| BsrBI | CCGCTC | 3 cut(s) | 106, 114, 254 |
| BsrFI | RCCGGY | 1 cut(s) | 836 |
| BssAI | RCCGGY | 1 cut(s) | 836 |
| BssECI | CCNNGG | 3 cut(s) | 158, 534, 886 |
| BssT1I | CCWWGG | 3 cut(s) | 158, 534, 886 |
| Bst4CI | ACNGT | 2 cut(s) | 451, 810 |
| Bst6I | CTCTTC | 1 cut(s) | 863 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 763 |
| BstBAI | YACGTR | 2 cut(s) | 131, 440 |
| BstC8I | GCNNGC | 1 cut(s) | 445 |
| BstDEI | CTNAG | 3 cut(s) | 139, 228, 321 |
| BstF5I | GGATG | 3 cut(s) | 217, 706, 928 |
| BstMAI | GTCTC | 4 cut(s) | 61, 168, 317, 998 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 763 |
| BstNSI | RCATGY | 1 cut(s) | 970 |
| BstSCI | CCNGG | 2 cut(s) | 49, 519 |
| BstV1I | GCAGC | 1 cut(s) | 244 |
| BstX2I | RGATCY | 2 cut(s) | 53, 691 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 100 |
| BstYI | RGATCY | 2 cut(s) | 53, 691 |
| BsuRI | GGCC | 3 cut(s) | 111, 524, 891 |
| BtrI | CACGTC | 1 cut(s) | 309 |
| BtsCI | GGATG | 3 cut(s) | 217, 706, 928 |
| BtsI | GCAGTG | 1 cut(s) | 39 |
| BtsIMutI | CAGTG | 2 cut(s) | 39, 815 |
| Cac8I | GCNNGC | 1 cut(s) | 445 |
| Cfr10I | RCCGGY | 1 cut(s) | 836 |
| Cfr13I | GGNCC | 1 cut(s) | 109 |
| CseI | GACGC | 2 cut(s) | 38, 1021 |
| Csp6I | GTAC | 4 cut(s) | 354, 722, 806, 944 |
| CspAI | ACCGGT | 1 cut(s) | 836 |
| CviAII | CATG | 3 cut(s) | 298, 363, 967 |
| CviQI | GTAC | 4 cut(s) | 354, 722, 806, 944 |
| DdeI | CTNAG | 3 cut(s) | 139, 228, 321 |
| DraI | TTTAAA | 2 cut(s) | 192, 493 |
| Eam1104I | CTCTTC | 1 cut(s) | 863 |
| EarI | CTCTTC | 1 cut(s) | 863 |
| Eco130I | CCWWGG | 3 cut(s) | 158, 534, 886 |
| Eco147I | AGGCCT | 1 cut(s) | 891 |
| Eco57I | CTGAAG | 1 cut(s) | 963 |
| EcoRI | GAATTC | 1 cut(s) | 316 |
| EcoT14I | CCWWGG | 3 cut(s) | 158, 534, 886 |
| ErhI | CCWWGG | 3 cut(s) | 158, 534, 886 |
| FaeI | CATG | 3 cut(s) | 301, 366, 970 |
| FaqI | GGGAC | 1 cut(s) | 689 |
| FatI | CATG | 3 cut(s) | 297, 362, 966 |
| FauI | CCCGC | 1 cut(s) | 99 |
| FauNDI | CATATG | 1 cut(s) | 24 |
| FbaI | TGATCA | 1 cut(s) | 418 |
| Fnu4HI | GCNGC | 3 cut(s) | 112, 233, 255 |
| FokI | GGATG | 3 cut(s) | 224, 713, 935 |
| Fsp4HI | GCNGC | 3 cut(s) | 112, 233, 255 |
| FspBI | CTAG | 2 cut(s) | 609, 986 |
| GluI | GCNGC | 3 cut(s) | 112, 233, 255 |
| HaeIII | GGCC | 3 cut(s) | 111, 524, 891 |
| HapII | CCGG | 3 cut(s) | 50, 521, 837 |
| HgaI | GACGC | 2 cut(s) | 38, 1021 |
| Hin1II | CATG | 3 cut(s) | 301, 366, 970 |
| HindIII | AAGCTT | 2 cut(s) | 501, 975 |
| HinfI | GANTC | 4 cut(s) | 149, 413, 480, 737 |
| HpaII | CCGG | 3 cut(s) | 50, 521, 837 |
| HphI | GGTGA | 3 cut(s) | 232, 550, 580 |
| Hpy166II | GTNNAC | 3 cut(s) | 354, 370, 724 |
| Hpy188I | TCNGA | 5 cut(s) | 142, 322, 418, 982, 1021 |
| Hpy188III | TCNNGA | 6 cut(s) | 173, 338, 471, 477, 773, 787 |
| Hpy8I | GTNNAC | 3 cut(s) | 354, 370, 724 |
| Hpy99I | CGWCG | 1 cut(s) | 310 |
| HpyAV | CCTTC | 1 cut(s) | 773 |
| HpyCH4III | ACNGT | 2 cut(s) | 451, 810 |
| HpyCH4IV | ACGT | 4 cut(s) | 130, 308, 334, 439 |
| HpyCH4V | TGCA | 3 cut(s) | 443, 602, 757 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 763 |
| HpyF3I | CTNAG | 3 cut(s) | 139, 228, 321 |
| HpySE526I | ACGT | 4 cut(s) | 130, 308, 334, 439 |
| Hsp92II | CATG | 3 cut(s) | 301, 366, 970 |
| Ksp22I | TGATCA | 1 cut(s) | 418 |
| LmnI | GCTCC | 2 cut(s) | 52, 103 |
| LpnPI | CCDG | 9 cut(s) | 60, 63, 106, 278, 534, 538, 772, 850, 850 |
| Lsp1109I | GCAGC | 1 cut(s) | 244 |
| MaeI | CTAG | 2 cut(s) | 609, 986 |
| MaeII | ACGT | 4 cut(s) | 130, 308, 334, 439 |
| MaeIII | GTNAC | 1 cut(s) | 586 |
| MbiI | CCGCTC | 3 cut(s) | 106, 114, 254 |
| MboII | GAAGA | 6 cut(s) | 392, 607, 646, 788, 880, 886 |
| MflI | RGATCY | 2 cut(s) | 53, 691 |
| MhlI | GDGCHC | 1 cut(s) | 49 |
| MluCI | AATT | 5 cut(s) | 206, 316, 494, 877, 910 |
| MlyI | GAGTC | 1 cut(s) | 731 |
| MmeI | TCCRAC | 1 cut(s) | 999 |
| MroXI | GAANNNNTTC | 1 cut(s) | 10 |
| MseI | TTAA | 5 cut(s) | 180, 191, 492, 743, 816 |
| MspI | CCGG | 3 cut(s) | 50, 521, 837 |
| MspR9I | CCNGG | 2 cut(s) | 51, 521 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 763 |
| NciI | CCSGG | 2 cut(s) | 51, 521 |
| NdeI | CATATG | 1 cut(s) | 24 |
| NlaIII | CATG | 3 cut(s) | 301, 366, 970 |
| NlaIV | GGNNCC | 2 cut(s) | 110, 573 |
| NmuCI | GTSAC | 1 cut(s) | 586 |
| NspI | RCATGY | 1 cut(s) | 970 |
| PceI | AGGCCT | 1 cut(s) | 891 |
| PciI | ACATGT | 1 cut(s) | 966 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 340 |
| PdmI | GAANNNNTTC | 1 cut(s) | 10 |
| PfeI | GAWTC | 3 cut(s) | 149, 413, 480 |
| PflFI | GACNNNGTC | 1 cut(s) | 1015 |
| PfoI | TCCNGGA | 1 cut(s) | 49 |
| PinAI | ACCGGT | 1 cut(s) | 836 |
| PkrI | GCNGC | 3 cut(s) | 113, 234, 256 |
| PleI | GAGTC | 1 cut(s) | 731 |
| PpsI | GAGTC | 1 cut(s) | 731 |
| Ppu21I | YACGTR | 2 cut(s) | 131, 440 |
| PscI | ACATGT | 1 cut(s) | 966 |
| PspN4I | GGNNCC | 2 cut(s) | 110, 573 |
| PspPI | GGNCC | 1 cut(s) | 109 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 555, 587 |
| PsuI | RGATCY | 2 cut(s) | 53, 691 |
| PsyI | GACNNNGTC | 1 cut(s) | 1015 |
| RsaI | GTAC | 4 cut(s) | 355, 723, 807, 945 |
| RsaNI | GTAC | 4 cut(s) | 354, 722, 806, 944 |
| SaqAI | TTAA | 5 cut(s) | 180, 191, 492, 743, 816 |
| SatI | GCNGC | 3 cut(s) | 112, 233, 255 |
| Sau96I | GGNCC | 1 cut(s) | 109 |
| ScaI | AGTACT | 1 cut(s) | 945 |
| SchI | GAGTC | 1 cut(s) | 731 |
| ScrFI | CCNGG | 2 cut(s) | 51, 521 |
| SduI | GDGCHC | 1 cut(s) | 49 |
| SmlI | CTYRAG | 2 cut(s) | 686, 771 |
| SmoI | CTYRAG | 2 cut(s) | 686, 771 |
| Sse9I | AATT | 5 cut(s) | 206, 316, 494, 877, 910 |
| SseBI | AGGCCT | 1 cut(s) | 891 |
| SsiI | CCGC | 3 cut(s) | 106, 112, 254 |
| SspMI | CTAG | 2 cut(s) | 609, 986 |
| StuI | AGGCCT | 1 cut(s) | 891 |
| StyD4I | CCNGG | 2 cut(s) | 49, 519 |
| StyI | CCWWGG | 3 cut(s) | 158, 534, 886 |
| TaaI | ACNGT | 2 cut(s) | 451, 810 |
| TaiI | ACGT | 4 cut(s) | 133, 311, 337, 442 |
| TaqI | TCGA | 3 cut(s) | 172, 250, 305 |
| TaqII | GACCGA | 1 cut(s) | 572 |
| TasI | AATT | 5 cut(s) | 206, 316, 494, 877, 910 |
| TatI | WGTACW | 3 cut(s) | 353, 721, 943 |
| TauI | GCSGC | 2 cut(s) | 114, 257 |
| TfiI | GAWTC | 3 cut(s) | 149, 413, 480 |
| Tru1I | TTAA | 5 cut(s) | 180, 191, 492, 743, 816 |
| Tru9I | TTAA | 5 cut(s) | 180, 191, 492, 743, 816 |
| TscAI | CASTG | 2 cut(s) | 39, 815 |
| TseFI | GTSAC | 1 cut(s) | 586 |
| TseI | GCWGC | 1 cut(s) | 232 |
| Tsp45I | GTSAC | 1 cut(s) | 586 |
| TspDTI | ATGAA | 3 cut(s) | 314, 386, 836 |
| TspRI | CASTG | 2 cut(s) | 39, 815 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1015 |
| XapI | RAATTY | 3 cut(s) | 316, 494, 877 |
| XceI | RCATGY | 1 cut(s) | 970 |
| XmnI | GAANNNNTTC | 1 cut(s) | 10 |
| XspI | CTAG | 2 cut(s) | 609, 986 |
| ZrmI | AGTACT | 1 cut(s) | 945 |