ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 260, 347 |
| AccI | GTMKAC | 1 cut(s) | 892 |
| AccII | CGCG | 1 cut(s) | 718 |
| AciI | CCGC | 3 cut(s) | 376, 716, 1214 |
| AclWI | GGATC | 3 cut(s) | 387, 525, 1074 |
| AcsI | RAATTY | 2 cut(s) | 562, 946 |
| AcyI | GRCGYC | 2 cut(s) | 257, 344 |
| AdeI | CACNNNGTG | 1 cut(s) | 761 |
| AfaI | GTAC | 2 cut(s) | 253, 694 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 57, 579 |
| AflII | CTTAAG | 1 cut(s) | 65 |
| AflIII | ACRYGT | 2 cut(s) | 1180, 1205 |
| AgsI | TTSAA | 5 cut(s) | 427, 733, 740, 886, 998 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 292 |
| AjiI | CACGTC | 1 cut(s) | 555 |
| AjnI | CCWGG | 1 cut(s) | 788 |
| AluBI | AGCT | 6 cut(s) | 21, 503, 743, 859, 994, 1080 |
| AluI | AGCT | 6 cut(s) | 21, 503, 743, 859, 994, 1080 |
| Alw26I | GTCTC | 2 cut(s) | 107, 563 |
| AlwI | GGATC | 3 cut(s) | 387, 525, 1074 |
| Ama87I | CYCGRG | 1 cut(s) | 57 |
| AoxI | GGCC | 2 cut(s) | 89, 135 |
| ApeKI | GCWGC | 1 cut(s) | 1243 |
| ApoI | RAATTY | 2 cut(s) | 562, 946 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 839 |
| AspA2I | CCTAGG | 1 cut(s) | 305 |
| AspS9I | GGNCC | 4 cut(s) | 90, 294, 461, 542 |
| AsuHPI | GGTGA | 6 cut(s) | 253, 293, 713, 773, 790, 803 |
| AvaI | CYCGRG | 1 cut(s) | 57 |
| AvaII | GGWCC | 3 cut(s) | 294, 461, 542 |
| AvrII | CCTAGG | 1 cut(s) | 305 |
| BaeGI | GKGCMC | 1 cut(s) | 64 |
| BbsI | GAAGAC | 1 cut(s) | 94 |
| BccI | CCATC | 2 cut(s) | 188, 452 |
| BciT130I | CCWGG | 1 cut(s) | 790 |
| BciVI | GTATCC | 1 cut(s) | 388 |
| BclI | TGATCA | 1 cut(s) | 664 |
| BcoDI | GTCTC | 2 cut(s) | 107, 563 |
| BfaI | CTAG | 4 cut(s) | 306, 417, 849, 1077 |
| BfrI | CTTAAG | 1 cut(s) | 65 |
| BfuI | GTATCC | 1 cut(s) | 388 |
| BisI | GCNGC | 1 cut(s) | 1244 |
| BlnI | CCTAGG | 1 cut(s) | 305 |
| BlsI | GCNGC | 1 cut(s) | 1245 |
| BmcAI | AGTACT | 1 cut(s) | 694 |
| Bme1390I | CCNGG | 1 cut(s) | 790 |
| Bme18I | GGWCC | 3 cut(s) | 294, 461, 542 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 292 |
| BmeT110I | CYCGRG | 1 cut(s) | 57 |
| BmgBI | CACGTC | 1 cut(s) | 555 |
| BmgT120I | GGNCC | 4 cut(s) | 90, 294, 461, 542 |
| BmiI | GGNNCC | 3 cut(s) | 92, 295, 543 |
| BmrFI | CCNGG | 1 cut(s) | 790 |
| BmrI | ACTGGG | 1 cut(s) | 170 |
| BmsI | GCATC | 5 cut(s) | 133, 630, 652, 853, 1225 |
| BmuI | ACTGGG | 1 cut(s) | 170 |
| BpiI | GAAGAC | 1 cut(s) | 94 |
| BpmI | CTGGAG | 1 cut(s) | 225 |
| Bpu10I | CCTNAGC | 1 cut(s) | 177 |
| BpuEI | CTTGAG | 2 cut(s) | 299, 531 |
| Bsa29I | ATCGAT | 2 cut(s) | 273, 1226 |
| BsaBI | GATNNNNATC | 1 cut(s) | 663 |
| BsaHI | GRCGYC | 2 cut(s) | 257, 344 |
| BsaI | GGTCTC | 1 cut(s) | 563 |
| BsaJI | CCNNGG | 2 cut(s) | 305, 404 |
| BsaWI | WCCGGW | 1 cut(s) | 296 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 57, 579 |
| Bse1I | ACTGG | 2 cut(s) | 165, 690 |
| Bse3DI | GCAATG | 4 cut(s) | 49, 451, 724, 775 |
| Bse8I | GATNNNNATC | 1 cut(s) | 663 |
| BseBI | CCWGG | 1 cut(s) | 790 |
| BseCI | ATCGAT | 2 cut(s) | 273, 1226 |
| BseDI | CCNNGG | 2 cut(s) | 305, 404 |
| BseGI | GGATG | 4 cut(s) | 463, 805, 868, 1168 |
| BseJI | GATNNNNATC | 1 cut(s) | 663 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 57, 579 |
| BseMI | GCAATG | 4 cut(s) | 49, 451, 724, 775 |
| BseMII | CTCAG | 2 cut(s) | 185, 353 |
| BseNI | ACTGG | 2 cut(s) | 165, 690 |
| BseSI | GKGCMC | 1 cut(s) | 64 |
| Bsh1236I | CGCG | 1 cut(s) | 718 |
| BshFI | GGCC | 2 cut(s) | 91, 137 |
| BshVI | ATCGAT | 2 cut(s) | 273, 1226 |
| BsiHKCI | CYCGRG | 1 cut(s) | 57 |
| BsiSI | CCGG | 1 cut(s) | 297 |
| BslFI | GGGAC | 2 cut(s) | 555, 994 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 57, 579 |
| BsmAI | GTCTC | 2 cut(s) | 107, 563 |
| BsmFI | GGGAC | 2 cut(s) | 555, 994 |
| BsnI | GGCC | 2 cut(s) | 91, 137 |
| Bso31I | GGTCTC | 1 cut(s) | 563 |
| BsoBI | CYCGRG | 1 cut(s) | 57 |
| Bsp1286I | GDGCHC | 1 cut(s) | 64 |
| Bsp143I | GATC | 7 cut(s) | 75, 274, 379, 517, 664, 1037, 1066 |
| BspACI | CCGC | 3 cut(s) | 376, 716, 1214 |
| BspANI | GGCC | 2 cut(s) | 91, 137 |
| BspCNI | CTCAG | 2 cut(s) | 184, 352 |
| BspDI | ATCGAT | 2 cut(s) | 273, 1226 |
| BspFNI | CGCG | 1 cut(s) | 718 |
| BspLI | GGNNCC | 3 cut(s) | 92, 295, 543 |
| BspPI | GGATC | 3 cut(s) | 387, 525, 1074 |
| BspTI | CTTAAG | 1 cut(s) | 65 |
| BspTNI | GGTCTC | 1 cut(s) | 563 |
| BsrDI | GCAATG | 4 cut(s) | 49, 451, 724, 775 |
| BsrI | ACTGG | 2 cut(s) | 165, 690 |
| BssECI | CCNNGG | 2 cut(s) | 305, 404 |
| BssMI | GATC | 7 cut(s) | 75, 274, 379, 517, 664, 1037, 1066 |
| BssNI | GRCGYC | 2 cut(s) | 257, 344 |
| BssT1I | CCWWGG | 2 cut(s) | 305, 404 |
| Bst2UI | CCWGG | 1 cut(s) | 790 |
| Bst4CI | ACNGT | 1 cut(s) | 697 |
| Bst6I | CTCTTC | 2 cut(s) | 405, 1011 |
| BstACI | GRCGYC | 2 cut(s) | 257, 344 |
| BstAFI | CTTAAG | 1 cut(s) | 65 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 373 |
| BstC8I | GCNNGC | 3 cut(s) | 602, 687, 786 |
| BstDEI | CTNAG | 7 cut(s) | 17, 117, 171, 177, 339, 383, 653 |
| BstEII | GGTNACC | 2 cut(s) | 299, 809 |
| BstF5I | GGATG | 4 cut(s) | 463, 805, 868, 1168 |
| BstFNI | CGCG | 1 cut(s) | 718 |
| BstKTI | GATC | 7 cut(s) | 78, 277, 382, 520, 667, 1040, 1069 |
| BstMAI | GTCTC | 2 cut(s) | 107, 563 |
| BstMBI | GATC | 7 cut(s) | 75, 274, 379, 517, 664, 1037, 1066 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 27, 143, 373, 790, 1077 |
| BstNI | CCWGG | 1 cut(s) | 790 |
| BstNSI | RCATGY | 2 cut(s) | 220, 1209 |
| BstPI | GGTNACC | 2 cut(s) | 299, 809 |
| BstSCI | CCNGG | 1 cut(s) | 788 |
| BstSLI | GKGCMC | 1 cut(s) | 64 |
| BstUI | CGCG | 1 cut(s) | 718 |
| BstV2I | GAAGAC | 1 cut(s) | 94 |
| BstX2I | RGATCY | 2 cut(s) | 379, 517 |
| BstYI | RGATCY | 2 cut(s) | 379, 517 |
| Bsu15I | ATCGAT | 2 cut(s) | 273, 1226 |
| BsuI | GTATCC | 1 cut(s) | 388 |
| BsuRI | GGCC | 2 cut(s) | 91, 137 |
| BsuTUI | ATCGAT | 2 cut(s) | 273, 1226 |
| BtgZI | GCGATG | 1 cut(s) | 207 |
| BtrI | CACGTC | 1 cut(s) | 555 |
| BtsCI | GGATG | 4 cut(s) | 463, 805, 868, 1168 |
| BtsIMutI | CAGTG | 1 cut(s) | 158 |
| Cac8I | GCNNGC | 3 cut(s) | 602, 687, 786 |
| Cfr13I | GGNCC | 4 cut(s) | 90, 294, 461, 542 |
| ClaI | ATCGAT | 2 cut(s) | 273, 1226 |
| CseI | GACGC | 1 cut(s) | 707 |
| Csp6I | GTAC | 2 cut(s) | 252, 693 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 536, 571 |
| CviAII | CATG | 6 cut(s) | 217, 609, 668, 758, 1127, 1206 |
| CviQI | GTAC | 2 cut(s) | 252, 693 |
| DdeI | CTNAG | 7 cut(s) | 17, 117, 171, 177, 339, 383, 653 |
| DpnI | GATC | 7 cut(s) | 77, 276, 381, 519, 666, 1039, 1068 |
| DpnII | GATC | 7 cut(s) | 75, 274, 379, 517, 664, 1037, 1066 |
| DraIII | CACNNNGTG | 1 cut(s) | 761 |
| DriI | GACNNNNNGTC | 1 cut(s) | 292 |
| Eam1104I | CTCTTC | 2 cut(s) | 405, 1011 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 292 |
| EarI | CTCTTC | 2 cut(s) | 405, 1011 |
| Eco130I | CCWWGG | 2 cut(s) | 305, 404 |
| Eco31I | GGTCTC | 1 cut(s) | 563 |
| Eco47I | GGWCC | 3 cut(s) | 294, 461, 542 |
| Eco88I | CYCGRG | 1 cut(s) | 57 |
| Eco91I | GGTNACC | 2 cut(s) | 299, 809 |
| EcoO109I | RGGNCCY | 2 cut(s) | 90, 542 |
| EcoO65I | GGTNACC | 2 cut(s) | 299, 809 |
| EcoRI | GAATTC | 1 cut(s) | 562 |
| EcoRII | CCWGG | 1 cut(s) | 788 |
| EcoT14I | CCWWGG | 2 cut(s) | 305, 404 |
| EcoT22I | ATGCAT | 1 cut(s) | 645 |
| ErhI | CCWWGG | 2 cut(s) | 305, 404 |
| FaeI | CATG | 6 cut(s) | 220, 612, 671, 761, 1130, 1209 |
| FaqI | GGGAC | 2 cut(s) | 555, 994 |
| FatI | CATG | 6 cut(s) | 216, 608, 667, 757, 1126, 1205 |
| FauI | CCCGC | 1 cut(s) | 369 |
| FauNDI | CATATG | 1 cut(s) | 483 |
| FbaI | TGATCA | 1 cut(s) | 664 |
| FblI | GTMKAC | 1 cut(s) | 892 |
| Fnu4HI | GCNGC | 1 cut(s) | 1244 |
| FokI | GGATG | 4 cut(s) | 470, 812, 875, 1175 |
| Fsp4HI | GCNGC | 1 cut(s) | 1244 |
| FspBI | CTAG | 4 cut(s) | 306, 417, 849, 1077 |
| GluI | GCNGC | 1 cut(s) | 1244 |
| GsuI | CTGGAG | 1 cut(s) | 225 |
| HaeIII | GGCC | 2 cut(s) | 91, 137 |
| HapII | CCGG | 1 cut(s) | 297 |
| HgaI | GACGC | 1 cut(s) | 707 |
| Hin1I | GRCGYC | 2 cut(s) | 257, 344 |
| Hin1II | CATG | 6 cut(s) | 220, 612, 671, 761, 1130, 1209 |
| HincII | GTYRAC | 1 cut(s) | 893 |
| HindII | GTYRAC | 1 cut(s) | 893 |
| HindIII | AAGCTT | 2 cut(s) | 501, 992 |
| HinfI | GANTC | 3 cut(s) | 659, 956, 1019 |
| HpaII | CCGG | 1 cut(s) | 297 |
| HphI | GGTGA | 6 cut(s) | 253, 293, 713, 773, 790, 803 |
| Hpy166II | GTNNAC | 2 cut(s) | 893, 1211 |
| Hpy188I | TCNGA | 6 cut(s) | 342, 349, 568, 626, 664, 1221 |
| Hpy188III | TCNNGA | 3 cut(s) | 204, 223, 278 |
| Hpy8I | GTNNAC | 2 cut(s) | 893, 1211 |
| Hpy99I | CGWCG | 2 cut(s) | 259, 556 |
| HpyAV | CCTTC | 3 cut(s) | 148, 448, 1055 |
| HpyCH4III | ACNGT | 1 cut(s) | 697 |
| HpyCH4IV | ACGT | 4 cut(s) | 257, 344, 554, 1180 |
| HpyCH4V | TGCA | 6 cut(s) | 30, 42, 600, 643, 685, 768 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 27, 143, 373, 790, 1077 |
| HpyF3I | CTNAG | 7 cut(s) | 17, 117, 171, 177, 339, 383, 653 |
| HpySE526I | ACGT | 4 cut(s) | 257, 344, 554, 1180 |
| Hsp92I | GRCGYC | 2 cut(s) | 257, 344 |
| Hsp92II | CATG | 6 cut(s) | 220, 612, 671, 761, 1130, 1209 |
| Ksp22I | TGATCA | 1 cut(s) | 664 |
| Kzo9I | GATC | 7 cut(s) | 75, 274, 379, 517, 664, 1037, 1066 |
| LweI | GCATC | 5 cut(s) | 133, 630, 652, 853, 1225 |
| MaeI | CTAG | 4 cut(s) | 306, 417, 849, 1077 |
| MaeII | ACGT | 4 cut(s) | 257, 344, 554, 1180 |
| MaeIII | GTNAC | 9 cut(s) | 156, 258, 299, 412, 614, 719, 809, 1045, 1186 |
| MalI | GATC | 7 cut(s) | 77, 276, 381, 519, 666, 1039, 1068 |
| MboI | GATC | 7 cut(s) | 75, 274, 379, 517, 664, 1037, 1066 |
| MboII | GAAGA | 5 cut(s) | 94, 392, 985, 1028, 1246 |
| MfeI | CAATTG | 2 cut(s) | 575, 824 |
| MflI | RGATCY | 2 cut(s) | 379, 517 |
| MhlI | GDGCHC | 1 cut(s) | 64 |
| MluCI | AATT | 9 cut(s) | 25, 96, 465, 562, 575, 675, 824, 932, 946 |
| MlyI | GAGTC | 1 cut(s) | 1028 |
| MmeI | TCCRAC | 3 cut(s) | 564, 906, 948 |
| Mph1103I | ATGCAT | 1 cut(s) | 645 |
| MroXI | GAANNNNTTC | 1 cut(s) | 839 |
| MseI | TTAA | 3 cut(s) | 66, 950, 983 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1204, 1228 |
| MspCI | CTTAAG | 1 cut(s) | 65 |
| MspI | CCGG | 1 cut(s) | 297 |
| MspR9I | CCNGG | 1 cut(s) | 790 |
| MunI | CAATTG | 2 cut(s) | 575, 824 |
| MvaI | CCWGG | 1 cut(s) | 790 |
| MvnI | CGCG | 1 cut(s) | 718 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 27, 143, 373, 790, 1077 |
| NdeI | CATATG | 1 cut(s) | 483 |
| NdeII | GATC | 7 cut(s) | 75, 274, 379, 517, 664, 1037, 1066 |
| NlaIII | CATG | 6 cut(s) | 220, 612, 671, 761, 1130, 1209 |
| NlaIV | GGNNCC | 3 cut(s) | 92, 295, 543 |
| NmuCI | GTSAC | 8 cut(s) | 156, 258, 299, 412, 614, 719, 809, 1186 |
| NsiI | ATGCAT | 1 cut(s) | 645 |
| NspI | RCATGY | 2 cut(s) | 220, 1209 |
| PciI | ACATGT | 1 cut(s) | 1205 |
| PdmI | GAANNNNTTC | 1 cut(s) | 839 |
| PfeI | GAWTC | 2 cut(s) | 659, 956 |
| PflFI | GACNNNGTC | 1 cut(s) | 717 |
| PkrI | GCNGC | 1 cut(s) | 1245 |
| PleI | GAGTC | 1 cut(s) | 1027 |
| PpsI | GAGTC | 1 cut(s) | 1027 |
| PpuMI | RGGWCCY | 1 cut(s) | 542 |
| PscI | ACATGT | 1 cut(s) | 1205 |
| Psp5II | RGGWCCY | 1 cut(s) | 542 |
| Psp6I | CCWGG | 1 cut(s) | 788 |
| PspEI | GGTNACC | 2 cut(s) | 299, 809 |
| PspGI | CCWGG | 1 cut(s) | 788 |
| PspN4I | GGNNCC | 3 cut(s) | 92, 295, 543 |
| PspPI | GGNCC | 4 cut(s) | 90, 294, 461, 542 |
| PspPPI | RGGWCCY | 1 cut(s) | 542 |
| PsuI | RGATCY | 2 cut(s) | 379, 517 |
| PsyI | GACNNNGTC | 1 cut(s) | 717 |
| RsaI | GTAC | 2 cut(s) | 253, 694 |
| RsaNI | GTAC | 2 cut(s) | 252, 693 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1204, 1228 |
| SalI | GTCGAC | 1 cut(s) | 891 |
| SaqAI | TTAA | 3 cut(s) | 66, 950, 983 |
| SatI | GCNGC | 1 cut(s) | 1244 |
| Sau3AI | GATC | 7 cut(s) | 75, 274, 379, 517, 664, 1037, 1066 |
| Sau96I | GGNCC | 4 cut(s) | 90, 294, 461, 542 |
| ScaI | AGTACT | 1 cut(s) | 694 |
| SchI | GAGTC | 1 cut(s) | 1028 |
| ScrFI | CCNGG | 1 cut(s) | 790 |
| SduI | GDGCHC | 1 cut(s) | 64 |
| SfaNI | GCATC | 5 cut(s) | 133, 630, 652, 853, 1225 |
| SinI | GGWCC | 3 cut(s) | 294, 461, 542 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1204, 1228 |
| SmlI | CTYRAG | 3 cut(s) | 65, 278, 546 |
| SmoI | CTYRAG | 3 cut(s) | 65, 278, 546 |
| Sse9I | AATT | 9 cut(s) | 25, 96, 465, 562, 575, 675, 824, 932, 946 |
| SsiI | CCGC | 3 cut(s) | 376, 716, 1214 |
| SspI | AATATT | 1 cut(s) | 1120 |
| SspMI | CTAG | 4 cut(s) | 306, 417, 849, 1077 |
| StyD4I | CCNGG | 1 cut(s) | 788 |
| StyI | CCWWGG | 2 cut(s) | 305, 404 |
| TaaI | ACNGT | 1 cut(s) | 697 |
| TaiI | ACGT | 4 cut(s) | 260, 347, 557, 1183 |
| TaqI | TCGA | 5 cut(s) | 141, 273, 892, 1040, 1226 |
| TasI | AATT | 9 cut(s) | 25, 96, 465, 562, 575, 675, 824, 932, 946 |
| TatI | WGTACW | 1 cut(s) | 692 |
| TfiI | GAWTC | 2 cut(s) | 659, 956 |
| Tru1I | TTAA | 3 cut(s) | 66, 950, 983 |
| Tru9I | TTAA | 3 cut(s) | 66, 950, 983 |
| TscAI | CASTG | 1 cut(s) | 165 |
| TseFI | GTSAC | 8 cut(s) | 156, 258, 299, 412, 614, 719, 809, 1186 |
| TseI | GCWGC | 1 cut(s) | 1243 |
| Tsp45I | GTSAC | 8 cut(s) | 156, 258, 299, 412, 614, 719, 809, 1186 |
| TspDTI | ATGAA | 3 cut(s) | 444, 462, 869 |
| TspGWI | ACGGA | 2 cut(s) | 303, 812 |
| TspRI | CASTG | 1 cut(s) | 165 |
| Tth111I | GACNNNGTC | 1 cut(s) | 717 |
| Vha464I | CTTAAG | 1 cut(s) | 65 |
| VpaK11BI | GGWCC | 3 cut(s) | 294, 461, 542 |
| XapI | RAATTY | 2 cut(s) | 562, 946 |
| XceI | RCATGY | 2 cut(s) | 220, 1209 |
| XmaJI | CCTAGG | 1 cut(s) | 305 |
| XmiI | GTMKAC | 1 cut(s) | 892 |
| XmnI | GAANNNNTTC | 1 cut(s) | 839 |
| XspI | CTAG | 4 cut(s) | 306, 417, 849, 1077 |
| ZraI | GACGTC | 2 cut(s) | 258, 345 |
| ZrmI | AGTACT | 1 cut(s) | 694 |
| Zsp2I | ATGCAT | 1 cut(s) | 645 |