ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 171 |
| AccI | GTMKAC | 1 cut(s) | 249 |
| AciI | CCGC | 1 cut(s) | 470 |
| AclWI | GGATC | 1 cut(s) | 831 |
| AcsI | RAATTY | 1 cut(s) | 357 |
| AcuI | CTGAAG | 1 cut(s) | 779 |
| AcyI | GRCGYC | 1 cut(s) | 313 |
| AfaI | GTAC | 1 cut(s) | 762 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 394 |
| AgsI | TTSAA | 4 cut(s) | 67, 245, 287, 925 |
| AjnI | CCWGG | 1 cut(s) | 479 |
| AluBI | AGCT | 5 cut(s) | 129, 518, 697, 733, 899 |
| AluI | AGCT | 5 cut(s) | 129, 518, 697, 733, 899 |
| Alw21I | GWGCWC | 1 cut(s) | 527 |
| Alw26I | GTCTC | 1 cut(s) | 82 |
| Alw44I | GTGCAC | 1 cut(s) | 523 |
| AlwI | GGATC | 1 cut(s) | 831 |
| AoxI | GGCC | 3 cut(s) | 89, 385, 798 |
| ApaLI | GTGCAC | 1 cut(s) | 523 |
| ApeKI | GCWGC | 3 cut(s) | 42, 694, 896 |
| ApoI | RAATTY | 1 cut(s) | 357 |
| AseI | ATTAAT | 1 cut(s) | 738 |
| AspLEI | GCGC | 1 cut(s) | 172 |
| AspS9I | GGNCC | 5 cut(s) | 70, 293, 386, 467, 608 |
| AsuHPI | GGTGA | 3 cut(s) | 257, 875, 1030 |
| AvaII | GGWCC | 4 cut(s) | 70, 293, 467, 608 |
| BaeGI | GKGCMC | 1 cut(s) | 527 |
| Bbv12I | GWGCWC | 1 cut(s) | 527 |
| BbvI | GCAGC | 3 cut(s) | 54, 706, 908 |
| BccI | CCATC | 4 cut(s) | 188, 303, 377, 778 |
| BciT130I | CCWGG | 1 cut(s) | 481 |
| BcoDI | GTCTC | 1 cut(s) | 82 |
| BfaI | CTAG | 3 cut(s) | 297, 306, 393 |
| BfmI | CTRYAG | 2 cut(s) | 40, 698 |
| BisI | GCNGC | 3 cut(s) | 43, 695, 897 |
| BlsI | GCNGC | 3 cut(s) | 44, 696, 898 |
| Bme1390I | CCNGG | 1 cut(s) | 481 |
| Bme18I | GGWCC | 4 cut(s) | 70, 293, 467, 608 |
| BmgT120I | GGNCC | 5 cut(s) | 70, 293, 386, 467, 608 |
| BmrFI | CCNGG | 1 cut(s) | 481 |
| BmrI | ACTGGG | 1 cut(s) | 221 |
| BmuI | ACTGGG | 1 cut(s) | 221 |
| BpmI | CTGGAG | 1 cut(s) | 134 |
| BsaHI | GRCGYC | 1 cut(s) | 313 |
| BsaJI | CCNNGG | 1 cut(s) | 463 |
| BsaWI | WCCGGW | 1 cut(s) | 203 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 244, 274 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 394 |
| Bse1I | ACTGG | 4 cut(s) | 151, 216, 768, 880 |
| BseBI | CCWGG | 1 cut(s) | 481 |
| BseDI | CCNNGG | 1 cut(s) | 463 |
| BseGI | GGATG | 4 cut(s) | 222, 238, 733, 1018 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 394 |
| BseMII | CTCAG | 3 cut(s) | 107, 573, 759 |
| BseNI | ACTGG | 4 cut(s) | 151, 216, 768, 880 |
| BseRI | GAGGAG | 3 cut(s) | 252, 922, 973 |
| BseSI | GKGCMC | 1 cut(s) | 527 |
| BseXI | GCAGC | 3 cut(s) | 54, 706, 908 |
| BshFI | GGCC | 3 cut(s) | 91, 387, 800 |
| BsiHKAI | GWGCWC | 1 cut(s) | 527 |
| BsiSI | CCGG | 1 cut(s) | 204 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 394 |
| BsmAI | GTCTC | 1 cut(s) | 82 |
| BsnI | GGCC | 3 cut(s) | 91, 387, 800 |
| Bsp1286I | GDGCHC | 1 cut(s) | 527 |
| Bsp143I | GATC | 4 cut(s) | 96, 120, 451, 836 |
| BspACI | CCGC | 1 cut(s) | 470 |
| BspANI | GGCC | 3 cut(s) | 91, 387, 800 |
| BspCNI | CTCAG | 3 cut(s) | 106, 574, 760 |
| BspMAI | CTGCAG | 1 cut(s) | 44 |
| BspPI | GGATC | 1 cut(s) | 831 |
| BsrI | ACTGG | 4 cut(s) | 151, 216, 768, 880 |
| BssECI | CCNNGG | 1 cut(s) | 463 |
| BssMI | GATC | 4 cut(s) | 96, 120, 451, 836 |
| BssNI | GRCGYC | 1 cut(s) | 313 |
| BssT1I | CCWWGG | 1 cut(s) | 463 |
| Bst2UI | CCWGG | 1 cut(s) | 481 |
| Bst6I | CTCTTC | 1 cut(s) | 810 |
| BstACI | GRCGYC | 1 cut(s) | 313 |
| BstDEI | CTNAG | 4 cut(s) | 17, 93, 582, 768 |
| BstF5I | GGATG | 4 cut(s) | 222, 238, 733, 1018 |
| BstHHI | GCGC | 1 cut(s) | 172 |
| BstKTI | GATC | 4 cut(s) | 99, 123, 454, 839 |
| BstMAI | GTCTC | 1 cut(s) | 82 |
| BstMBI | GATC | 4 cut(s) | 96, 120, 451, 836 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 330 |
| BstNI | CCWGG | 1 cut(s) | 481 |
| BstSCI | CCNGG | 1 cut(s) | 479 |
| BstSFI | CTRYAG | 2 cut(s) | 40, 698 |
| BstSLI | GKGCMC | 1 cut(s) | 527 |
| BstV1I | GCAGC | 3 cut(s) | 54, 706, 908 |
| BsuRI | GGCC | 3 cut(s) | 91, 387, 800 |
| BtsCI | GGATG | 4 cut(s) | 222, 238, 733, 1018 |
| CfoI | GCGC | 1 cut(s) | 172 |
| Cfr13I | GGNCC | 5 cut(s) | 70, 293, 386, 467, 608 |
| CseI | GACGC | 1 cut(s) | 302 |
| CsiI | ACCWGGT | 1 cut(s) | 479 |
| Csp6I | GTAC | 1 cut(s) | 761 |
| CviAII | CATG | 3 cut(s) | 534, 616, 849 |
| CviQI | GTAC | 1 cut(s) | 761 |
| DdeI | CTNAG | 4 cut(s) | 17, 93, 582, 768 |
| DpnI | GATC | 4 cut(s) | 98, 122, 453, 838 |
| DpnII | GATC | 4 cut(s) | 96, 120, 451, 836 |
| DraI | TTTAAA | 2 cut(s) | 142, 685 |
| Eam1104I | CTCTTC | 1 cut(s) | 810 |
| EarI | CTCTTC | 1 cut(s) | 810 |
| Eco130I | CCWWGG | 1 cut(s) | 463 |
| Eco147I | AGGCCT | 2 cut(s) | 91, 800 |
| Eco47I | GGWCC | 4 cut(s) | 70, 293, 467, 608 |
| Eco57I | CTGAAG | 1 cut(s) | 779 |
| EcoO109I | RGGNCCY | 3 cut(s) | 70, 293, 608 |
| EcoRII | CCWGG | 1 cut(s) | 479 |
| EcoT14I | CCWWGG | 1 cut(s) | 463 |
| ErhI | CCWWGG | 1 cut(s) | 463 |
| FaeI | CATG | 3 cut(s) | 537, 619, 852 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 46, 78 |
| FatI | CATG | 3 cut(s) | 533, 615, 848 |
| FblI | GTMKAC | 1 cut(s) | 249 |
| Fnu4HI | GCNGC | 3 cut(s) | 43, 695, 897 |
| FokI | GGATG | 4 cut(s) | 229, 245, 740, 1025 |
| Fsp4HI | GCNGC | 3 cut(s) | 43, 695, 897 |
| FspBI | CTAG | 3 cut(s) | 297, 306, 393 |
| FspI | TGCGCA | 1 cut(s) | 171 |
| GlaI | GCGC | 1 cut(s) | 171 |
| GluI | GCNGC | 3 cut(s) | 43, 695, 897 |
| GsuI | CTGGAG | 1 cut(s) | 134 |
| HaeIII | GGCC | 3 cut(s) | 91, 387, 800 |
| HapII | CCGG | 1 cut(s) | 204 |
| HgaI | GACGC | 1 cut(s) | 302 |
| HhaI | GCGC | 1 cut(s) | 172 |
| Hin1I | GRCGYC | 1 cut(s) | 313 |
| Hin1II | CATG | 3 cut(s) | 537, 619, 852 |
| Hin6I | GCGC | 1 cut(s) | 170 |
| HinP1I | GCGC | 1 cut(s) | 170 |
| HincII | GTYRAC | 2 cut(s) | 250, 477 |
| HindII | GTYRAC | 2 cut(s) | 250, 477 |
| HindIII | AAGCTT | 1 cut(s) | 127 |
| HinfI | GANTC | 3 cut(s) | 36, 530, 818 |
| HpaII | CCGG | 1 cut(s) | 204 |
| HphI | GGTGA | 3 cut(s) | 257, 875, 1030 |
| Hpy166II | GTNNAC | 6 cut(s) | 209, 250, 443, 477, 525, 1062 |
| Hpy188I | TCNGA | 5 cut(s) | 96, 125, 363, 506, 583 |
| Hpy188III | TCNNGA | 2 cut(s) | 339, 606 |
| Hpy8I | GTNNAC | 6 cut(s) | 209, 250, 443, 477, 525, 1062 |
| Hpy99I | CGWCG | 1 cut(s) | 572 |
| HpyAV | CCTTC | 6 cut(s) | 61, 232, 281, 684, 854, 1013 |
| HpyCH4IV | ACGT | 1 cut(s) | 1100 |
| HpyCH4V | TGCA | 4 cut(s) | 42, 525, 629, 1093 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 330 |
| HpyF3I | CTNAG | 4 cut(s) | 17, 93, 582, 768 |
| HpySE526I | ACGT | 1 cut(s) | 1100 |
| Hsp92I | GRCGYC | 1 cut(s) | 313 |
| Hsp92II | CATG | 3 cut(s) | 537, 619, 852 |
| HspAI | GCGC | 1 cut(s) | 170 |
| Kzo9I | GATC | 4 cut(s) | 96, 120, 451, 836 |
| LmnI | GCTCC | 1 cut(s) | 1027 |
| Lsp1109I | GCAGC | 3 cut(s) | 54, 706, 908 |
| MabI | ACCWGGT | 1 cut(s) | 479 |
| MaeI | CTAG | 3 cut(s) | 297, 306, 393 |
| MaeII | ACGT | 1 cut(s) | 1100 |
| MaeIII | GTNAC | 7 cut(s) | 299, 493, 539, 742, 844, 878, 1036 |
| MalI | GATC | 4 cut(s) | 98, 122, 453, 838 |
| MboI | GATC | 4 cut(s) | 96, 120, 451, 836 |
| MboII | GAAGA | 5 cut(s) | 604, 646, 784, 824, 827 |
| MhlI | GDGCHC | 1 cut(s) | 527 |
| MluCI | AATT | 5 cut(s) | 25, 357, 1032, 1051, 1110 |
| MlyI | GAGTC | 1 cut(s) | 827 |
| MmeI | TCCRAC | 3 cut(s) | 529, 639, 1083 |
| MseI | TTAA | 7 cut(s) | 131, 141, 351, 684, 738, 1050, 1114 |
| MslI | CAYNNNNRTG | 1 cut(s) | 650 |
| MspI | CCGG | 1 cut(s) | 204 |
| MspR9I | CCNGG | 1 cut(s) | 481 |
| MvaI | CCWGG | 1 cut(s) | 481 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 330 |
| NdeII | GATC | 4 cut(s) | 96, 120, 451, 836 |
| NlaIII | CATG | 3 cut(s) | 537, 619, 852 |
| NmuCI | GTSAC | 3 cut(s) | 539, 742, 1036 |
| NsbI | TGCGCA | 1 cut(s) | 171 |
| PceI | AGGCCT | 2 cut(s) | 91, 800 |
| PfeI | GAWTC | 2 cut(s) | 36, 530 |
| PflFI | GACNNNGTC | 1 cut(s) | 74 |
| PkrI | GCNGC | 3 cut(s) | 44, 696, 898 |
| PleI | GAGTC | 1 cut(s) | 826 |
| PpsI | GAGTC | 1 cut(s) | 826 |
| PpuMI | RGGWCCY | 3 cut(s) | 70, 293, 608 |
| PshBI | ATTAAT | 1 cut(s) | 738 |
| Psp5II | RGGWCCY | 3 cut(s) | 70, 293, 608 |
| Psp6I | CCWGG | 1 cut(s) | 479 |
| PspGI | CCWGG | 1 cut(s) | 479 |
| PspPI | GGNCC | 5 cut(s) | 70, 293, 386, 467, 608 |
| PspPPI | RGGWCCY | 3 cut(s) | 70, 293, 608 |
| PstI | CTGCAG | 1 cut(s) | 44 |
| PsyI | GACNNNGTC | 1 cut(s) | 74 |
| RsaI | GTAC | 1 cut(s) | 762 |
| RsaNI | GTAC | 1 cut(s) | 761 |
| RseI | CAYNNNNRTG | 1 cut(s) | 650 |
| SalI | GTCGAC | 1 cut(s) | 248 |
| SaqAI | TTAA | 7 cut(s) | 131, 141, 351, 684, 738, 1050, 1114 |
| SatI | GCNGC | 3 cut(s) | 43, 695, 897 |
| Sau3AI | GATC | 4 cut(s) | 96, 120, 451, 836 |
| Sau96I | GGNCC | 5 cut(s) | 70, 293, 386, 467, 608 |
| SchI | GAGTC | 1 cut(s) | 827 |
| ScrFI | CCNGG | 1 cut(s) | 481 |
| SduI | GDGCHC | 1 cut(s) | 527 |
| SexAI | ACCWGGT | 1 cut(s) | 479 |
| SfcI | CTRYAG | 2 cut(s) | 40, 698 |
| SinI | GGWCC | 4 cut(s) | 70, 293, 467, 608 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 650 |
| Sse9I | AATT | 5 cut(s) | 25, 357, 1032, 1051, 1110 |
| SseBI | AGGCCT | 2 cut(s) | 91, 800 |
| SsiI | CCGC | 1 cut(s) | 470 |
| SspI | AATATT | 1 cut(s) | 1075 |
| SspMI | CTAG | 3 cut(s) | 297, 306, 393 |
| StuI | AGGCCT | 2 cut(s) | 91, 800 |
| StyD4I | CCNGG | 1 cut(s) | 479 |
| StyI | CCWWGG | 1 cut(s) | 463 |
| TaiI | ACGT | 1 cut(s) | 1103 |
| TaqI | TCGA | 2 cut(s) | 249, 273 |
| TasI | AATT | 5 cut(s) | 25, 357, 1032, 1051, 1110 |
| TatI | WGTACW | 1 cut(s) | 760 |
| TfiI | GAWTC | 2 cut(s) | 36, 530 |
| Tru1I | TTAA | 7 cut(s) | 131, 141, 351, 684, 738, 1050, 1114 |
| Tru9I | TTAA | 7 cut(s) | 131, 141, 351, 684, 738, 1050, 1114 |
| TseFI | GTSAC | 3 cut(s) | 539, 742, 1036 |
| TseI | GCWGC | 3 cut(s) | 42, 694, 896 |
| Tsp45I | GTSAC | 3 cut(s) | 539, 742, 1036 |
| TspDTI | ATGAA | 6 cut(s) | 369, 387, 825, 875, 926, 1032 |
| TspGWI | ACGGA | 3 cut(s) | 242, 542, 1011 |
| Tth111I | GACNNNGTC | 1 cut(s) | 74 |
| VneI | GTGCAC | 1 cut(s) | 523 |
| VpaK11BI | GGWCC | 4 cut(s) | 70, 293, 467, 608 |
| VspI | ATTAAT | 1 cut(s) | 738 |
| XapI | RAATTY | 1 cut(s) | 357 |
| XmiI | GTMKAC | 1 cut(s) | 249 |
| XspI | CTAG | 3 cut(s) | 297, 306, 393 |