ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 127 |
| Acc36I | ACCTGC | 1 cut(s) | 217 |
| AccB1I | GGYRCC | 1 cut(s) | 166 |
| AciI | CCGC | 3 cut(s) | 146, 241, 253 |
| AcoI | YGGCCR | 1 cut(s) | 114 |
| AcyI | GRCGYC | 2 cut(s) | 167, 546 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 72, 78, 112 |
| AflIII | ACRYGT | 1 cut(s) | 18 |
| AgsI | TTSAA | 1 cut(s) | 505 |
| AjiI | CACGTC | 1 cut(s) | 19 |
| AjnI | CCWGG | 3 cut(s) | 71, 125, 288 |
| Alw26I | GTCTC | 1 cut(s) | 388 |
| AoxI | GGCC | 2 cut(s) | 80, 114 |
| ApeKI | GCWGC | 1 cut(s) | 238 |
| AspLEI | GCGC | 1 cut(s) | 169 |
| AspS9I | GGNCC | 2 cut(s) | 80, 103 |
| AsuC2I | CCSGG | 3 cut(s) | 14, 84, 370 |
| AsuHPI | GGTGA | 1 cut(s) | 61 |
| AvaII | GGWCC | 1 cut(s) | 103 |
| BaeGI | GKGCMC | 1 cut(s) | 89 |
| BalI | TGGCCA | 1 cut(s) | 116 |
| BanI | GGYRCC | 1 cut(s) | 166 |
| BauI | CACGAG | 1 cut(s) | 88 |
| BbvI | GCAGC | 1 cut(s) | 250 |
| BceAI | ACGGC | 1 cut(s) | 159 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 227, 261 |
| BciT130I | CCWGG | 3 cut(s) | 73, 127, 290 |
| BclI | TGATCA | 1 cut(s) | 192 |
| BcnI | CCSGG | 3 cut(s) | 14, 84, 370 |
| BcoDI | GTCTC | 1 cut(s) | 388 |
| BfaI | CTAG | 3 cut(s) | 47, 327, 557 |
| BfoI | RGCGCY | 1 cut(s) | 170 |
| BfuAI | ACCTGC | 1 cut(s) | 217 |
| BisI | GCNGC | 1 cut(s) | 239 |
| BlsI | GCNGC | 1 cut(s) | 240 |
| Bme1390I | CCNGG | 6 cut(s) | 14, 73, 84, 127, 290, 370 |
| Bme18I | GGWCC | 1 cut(s) | 103 |
| BmgBI | CACGTC | 1 cut(s) | 19 |
| BmgT120I | GGNCC | 2 cut(s) | 80, 103 |
| BmiI | GGNNCC | 3 cut(s) | 81, 168, 251 |
| BmrFI | CCNGG | 6 cut(s) | 14, 73, 84, 127, 290, 370 |
| BmsI | GCATC | 2 cut(s) | 261, 504 |
| BpuMI | CCSGG | 3 cut(s) | 14, 84, 370 |
| Bsa29I | ATCGAT | 1 cut(s) | 42 |
| BsaBI | GATNNNNATC | 1 cut(s) | 448 |
| BsaHI | GRCGYC | 2 cut(s) | 167, 546 |
| BsaJI | CCNNGG | 1 cut(s) | 221 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 140, 170 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 72, 78, 112 |
| Bse1I | ACTGG | 1 cut(s) | 105 |
| Bse8I | GATNNNNATC | 1 cut(s) | 448 |
| BseBI | CCWGG | 3 cut(s) | 73, 127, 290 |
| BseCI | ATCGAT | 1 cut(s) | 42 |
| BseDI | CCNNGG | 1 cut(s) | 221 |
| BseGI | GGATG | 3 cut(s) | 276, 298, 519 |
| BseJI | GATNNNNATC | 1 cut(s) | 448 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 72, 78, 112 |
| BseMII | CTCAG | 1 cut(s) | 476 |
| BseNI | ACTGG | 1 cut(s) | 105 |
| BseRI | GAGGAG | 1 cut(s) | 106 |
| BseSI | GKGCMC | 1 cut(s) | 89 |
| BseXI | GCAGC | 1 cut(s) | 250 |
| BsgI | GTGCAG | 1 cut(s) | 320 |
| BshFI | GGCC | 2 cut(s) | 82, 116 |
| BshNI | GGYRCC | 1 cut(s) | 166 |
| BshVI | ATCGAT | 1 cut(s) | 42 |
| BsiSI | CCGG | 3 cut(s) | 13, 83, 370 |
| BslFI | GGGAC | 2 cut(s) | 29, 308 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 72, 78, 112 |
| BsmAI | GTCTC | 1 cut(s) | 388 |
| BsmBI | CGTCTC | 1 cut(s) | 388 |
| BsmFI | GGGAC | 2 cut(s) | 29, 308 |
| BsmI | GAATGC | 1 cut(s) | 540 |
| BsnI | GGCC | 2 cut(s) | 82, 116 |
| Bsp1286I | GDGCHC | 1 cut(s) | 89 |
| Bsp143I | GATC | 4 cut(s) | 34, 39, 43, 192 |
| BspACI | CCGC | 3 cut(s) | 146, 241, 253 |
| BspANI | GGCC | 2 cut(s) | 82, 116 |
| BspCNI | CTCAG | 1 cut(s) | 475 |
| BspDI | ATCGAT | 1 cut(s) | 42 |
| BspLI | GGNNCC | 3 cut(s) | 81, 168, 251 |
| BspMI | ACCTGC | 1 cut(s) | 217 |
| BspT107I | GGYRCC | 1 cut(s) | 166 |
| BsrI | ACTGG | 1 cut(s) | 105 |
| BssECI | CCNNGG | 1 cut(s) | 221 |
| BssMI | GATC | 4 cut(s) | 34, 39, 43, 192 |
| BssNI | GRCGYC | 2 cut(s) | 167, 546 |
| BssSI | CACGAG | 1 cut(s) | 88 |
| Bst2BI | CACGAG | 1 cut(s) | 88 |
| Bst2UI | CCWGG | 3 cut(s) | 73, 127, 290 |
| Bst4CI | ACNGT | 1 cut(s) | 107 |
| Bst6I | CTCTTC | 1 cut(s) | 524 |
| BstACI | GRCGYC | 2 cut(s) | 167, 546 |
| BstDEI | CTNAG | 1 cut(s) | 462 |
| BstF5I | GGATG | 3 cut(s) | 276, 298, 519 |
| BstH2I | RGCGCY | 1 cut(s) | 170 |
| BstHHI | GCGC | 1 cut(s) | 169 |
| BstKTI | GATC | 4 cut(s) | 37, 42, 46, 195 |
| BstMAI | GTCTC | 1 cut(s) | 388 |
| BstMBI | GATC | 4 cut(s) | 34, 39, 43, 192 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 93, 247 |
| BstNI | CCWGG | 3 cut(s) | 73, 127, 290 |
| BstSCI | CCNGG | 6 cut(s) | 12, 71, 82, 125, 288, 368 |
| BstSLI | GKGCMC | 1 cut(s) | 89 |
| BstV1I | GCAGC | 1 cut(s) | 250 |
| Bsu15I | ATCGAT | 1 cut(s) | 42 |
| BsuRI | GGCC | 2 cut(s) | 82, 116 |
| BsuTUI | ATCGAT | 1 cut(s) | 42 |
| BtrI | CACGTC | 1 cut(s) | 19 |
| BtsCI | GGATG | 3 cut(s) | 276, 298, 519 |
| BveI | ACCTGC | 1 cut(s) | 217 |
| CfoI | GCGC | 1 cut(s) | 169 |
| Cfr13I | GGNCC | 2 cut(s) | 80, 103 |
| ClaI | ATCGAT | 1 cut(s) | 42 |
| CseI | GACGC | 1 cut(s) | 535 |
| CsiI | ACCWGGT | 1 cut(s) | 125 |
| CviAII | CATG | 3 cut(s) | 176, 185, 196 |
| CviJI | RGCY | 7 cut(s) | 26, 60, 82, 116, 250, 430, 466 |
| CviKI_1 | RGCY | 7 cut(s) | 26, 60, 82, 116, 250, 430, 466 |
| DdeI | CTNAG | 1 cut(s) | 462 |
| DinI | GGCGCC | 1 cut(s) | 168 |
| DpnI | GATC | 4 cut(s) | 36, 41, 45, 194 |
| DpnII | GATC | 4 cut(s) | 34, 39, 43, 192 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 127 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 127 |
| EaeI | YGGCCR | 1 cut(s) | 114 |
| Eam1104I | CTCTTC | 1 cut(s) | 524 |
| EarI | CTCTTC | 1 cut(s) | 524 |
| EciI | GGCGGA | 1 cut(s) | 161 |
| Eco32I | GATATC | 1 cut(s) | 136 |
| Eco47I | GGWCC | 1 cut(s) | 103 |
| EcoRII | CCWGG | 3 cut(s) | 71, 125, 288 |
| EcoRV | GATATC | 1 cut(s) | 136 |
| EgeI | GGCGCC | 1 cut(s) | 168 |
| EheI | GGCGCC | 1 cut(s) | 168 |
| Esp3I | CGTCTC | 1 cut(s) | 388 |
| FaeI | CATG | 3 cut(s) | 179, 188, 199 |
| FaiI | YATR | 4 cut(s) | 177, 186, 197, 338 |
| FaqI | GGGAC | 2 cut(s) | 29, 308 |
| FatI | CATG | 3 cut(s) | 175, 184, 195 |
| FbaI | TGATCA | 1 cut(s) | 192 |
| Fnu4HI | GCNGC | 1 cut(s) | 239 |
| FokI | GGATG | 3 cut(s) | 283, 305, 526 |
| Fsp4HI | GCNGC | 1 cut(s) | 239 |
| FspBI | CTAG | 3 cut(s) | 47, 327, 557 |
| GlaI | GCGC | 1 cut(s) | 168 |
| GluI | GCNGC | 1 cut(s) | 239 |
| HaeII | RGCGCY | 1 cut(s) | 170 |
| HaeIII | GGCC | 2 cut(s) | 82, 116 |
| HapII | CCGG | 3 cut(s) | 13, 83, 370 |
| HgaI | GACGC | 1 cut(s) | 535 |
| HhaI | GCGC | 1 cut(s) | 169 |
| Hin1I | GRCGYC | 2 cut(s) | 167, 546 |
| Hin1II | CATG | 3 cut(s) | 179, 188, 199 |
| Hin6I | GCGC | 1 cut(s) | 167 |
| HinP1I | GCGC | 1 cut(s) | 167 |
| HincII | GTYRAC | 1 cut(s) | 550 |
| HindII | GTYRAC | 1 cut(s) | 550 |
| HinfI | GANTC | 1 cut(s) | 476 |
| HpaII | CCGG | 3 cut(s) | 13, 83, 370 |
| HphI | GGTGA | 1 cut(s) | 61 |
| Hpy166II | GTNNAC | 1 cut(s) | 550 |
| Hpy188I | TCNGA | 6 cut(s) | 39, 133, 192, 381, 393, 475 |
| Hpy188III | TCNNGA | 1 cut(s) | 281 |
| Hpy8I | GTNNAC | 1 cut(s) | 550 |
| HpyAV | CCTTC | 2 cut(s) | 70, 76 |
| HpyCH4III | ACNGT | 1 cut(s) | 107 |
| HpyCH4IV | ACGT | 2 cut(s) | 18, 277 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 274, 301, 448 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 93, 247 |
| HpyF3I | CTNAG | 1 cut(s) | 462 |
| HpySE526I | ACGT | 2 cut(s) | 18, 277 |
| Hsp92I | GRCGYC | 2 cut(s) | 167, 546 |
| Hsp92II | CATG | 3 cut(s) | 179, 188, 199 |
| HspAI | GCGC | 1 cut(s) | 167 |
| KasI | GGCGCC | 1 cut(s) | 166 |
| Ksp22I | TGATCA | 1 cut(s) | 192 |
| Kzo9I | GATC | 4 cut(s) | 34, 39, 43, 192 |
| LmnI | GCTCC | 3 cut(s) | 93, 148, 255 |
| Lsp1109I | GCAGC | 1 cut(s) | 250 |
| LweI | GCATC | 2 cut(s) | 261, 504 |
| MabI | ACCWGGT | 1 cut(s) | 125 |
| MaeI | CTAG | 3 cut(s) | 47, 327, 557 |
| MaeII | ACGT | 2 cut(s) | 18, 277 |
| MalI | GATC | 4 cut(s) | 36, 41, 45, 194 |
| MboI | GATC | 4 cut(s) | 34, 39, 43, 192 |
| MboII | GAAGA | 4 cut(s) | 130, 367, 538, 541 |
| MhlI | GDGCHC | 1 cut(s) | 89 |
| MlsI | TGGCCA | 1 cut(s) | 116 |
| MluCI | AATT | 1 cut(s) | 505 |
| MluNI | TGGCCA | 1 cut(s) | 116 |
| Mly113I | GGCGCC | 1 cut(s) | 167 |
| MlyI | GAGTC | 1 cut(s) | 485 |
| MmeI | TCCRAC | 2 cut(s) | 248, 491 |
| MnlI | CCTC | 6 cut(s) | 84, 216, 228, 298, 307, 477 |
| Mox20I | TGGCCA | 1 cut(s) | 116 |
| MscI | TGGCCA | 1 cut(s) | 116 |
| MseI | TTAA | 1 cut(s) | 434 |
| Msp20I | TGGCCA | 1 cut(s) | 116 |
| MspA1I | CMGCKG | 1 cut(s) | 241 |
| MspI | CCGG | 3 cut(s) | 13, 83, 370 |
| MspR9I | CCNGG | 6 cut(s) | 14, 73, 84, 127, 290, 370 |
| Mva1269I | GAATGC | 1 cut(s) | 540 |
| MvaI | CCWGG | 3 cut(s) | 73, 127, 290 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 93, 247 |
| NarI | GGCGCC | 1 cut(s) | 167 |
| NciI | CCSGG | 3 cut(s) | 14, 84, 370 |
| NdeII | GATC | 4 cut(s) | 34, 39, 43, 192 |
| NlaIII | CATG | 3 cut(s) | 179, 188, 199 |
| NlaIV | GGNNCC | 3 cut(s) | 81, 168, 251 |
| PctI | GAATGC | 1 cut(s) | 540 |
| PfoI | TCCNGGA | 1 cut(s) | 12 |
| PkrI | GCNGC | 1 cut(s) | 240 |
| PleI | GAGTC | 1 cut(s) | 484 |
| PluTI | GGCGCC | 1 cut(s) | 170 |
| PpsI | GAGTC | 1 cut(s) | 484 |
| Psp6I | CCWGG | 3 cut(s) | 71, 125, 288 |
| PspGI | CCWGG | 3 cut(s) | 71, 125, 288 |
| PspN4I | GGNNCC | 3 cut(s) | 81, 168, 251 |
| PspPI | GGNCC | 2 cut(s) | 80, 103 |
| SaqAI | TTAA | 1 cut(s) | 434 |
| SatI | GCNGC | 1 cut(s) | 239 |
| Sau3AI | GATC | 4 cut(s) | 34, 39, 43, 192 |
| Sau96I | GGNCC | 2 cut(s) | 80, 103 |
| SchI | GAGTC | 1 cut(s) | 485 |
| ScrFI | CCNGG | 6 cut(s) | 14, 73, 84, 127, 290, 370 |
| SduI | GDGCHC | 1 cut(s) | 89 |
| SetI | ASST | 7 cut(s) | 10, 21, 74, 128, 231, 280, 318 |
| SexAI | ACCWGGT | 1 cut(s) | 125 |
| SfaNI | GCATC | 2 cut(s) | 261, 504 |
| SfoI | GGCGCC | 1 cut(s) | 168 |
| SinI | GGWCC | 1 cut(s) | 103 |
| Sse9I | AATT | 1 cut(s) | 505 |
| SsiI | CCGC | 3 cut(s) | 146, 241, 253 |
| SspDI | GGCGCC | 1 cut(s) | 166 |
| SspMI | CTAG | 3 cut(s) | 47, 327, 557 |
| StyD4I | CCNGG | 6 cut(s) | 12, 71, 82, 125, 288, 368 |
| TaaI | ACNGT | 1 cut(s) | 107 |
| TaiI | ACGT | 2 cut(s) | 21, 280 |
| TaqI | TCGA | 2 cut(s) | 42, 524 |
| TasI | AATT | 1 cut(s) | 505 |
| Tru1I | TTAA | 1 cut(s) | 434 |
| Tru9I | TTAA | 1 cut(s) | 434 |
| TseI | GCWGC | 1 cut(s) | 238 |
| TspDTI | ATGAA | 1 cut(s) | 43 |
| VpaK11BI | GGWCC | 1 cut(s) | 103 |
| XspI | CTAG | 3 cut(s) | 47, 327, 557 |