ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 123 |
| AccB1I | GGYRCC | 1 cut(s) | 123 |
| AccI | GTMKAC | 1 cut(s) | 206 |
| AccIII | TCCGGA | 1 cut(s) | 74 |
| AciI | CCGC | 2 cut(s) | 107, 483 |
| AfaI | GTAC | 3 cut(s) | 67, 125, 277 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 389 |
| AflII | CTTAAG | 1 cut(s) | 369 |
| AgsI | TTSAA | 4 cut(s) | 47, 54, 156, 312 |
| AjiI | CACGTC | 1 cut(s) | 505 |
| AjnI | CCWGG | 1 cut(s) | 363 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 282, 314 |
| AluBI | AGCT | 1 cut(s) | 411 |
| AluI | AGCT | 1 cut(s) | 411 |
| Alw26I | GTCTC | 1 cut(s) | 338 |
| Aor13HI | TCCGGA | 1 cut(s) | 74 |
| Asp718I | GGTACC | 1 cut(s) | 123 |
| AspLEI | GCGC | 1 cut(s) | 307 |
| AspS9I | GGNCC | 1 cut(s) | 380 |
| AvaII | GGWCC | 1 cut(s) | 380 |
| BanI | GGYRCC | 1 cut(s) | 123 |
| BbsI | GAAGAC | 1 cut(s) | 428 |
| BccI | CCATC | 1 cut(s) | 175 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 180, 214 |
| BciT130I | CCWGG | 1 cut(s) | 365 |
| BcoDI | GTCTC | 1 cut(s) | 338 |
| BfaI | CTAG | 1 cut(s) | 4 |
| BfoI | RGCGCY | 1 cut(s) | 308 |
| BfrI | CTTAAG | 1 cut(s) | 369 |
| Bme1390I | CCNGG | 1 cut(s) | 365 |
| Bme18I | GGWCC | 1 cut(s) | 380 |
| BmgBI | CACGTC | 1 cut(s) | 505 |
| BmgT120I | GGNCC | 1 cut(s) | 380 |
| BmiI | GGNNCC | 2 cut(s) | 125, 381 |
| BmrFI | CCNGG | 1 cut(s) | 365 |
| BmsI | GCATC | 4 cut(s) | 80, 332, 443, 470 |
| BoxI | GACNNNNGTC | 1 cut(s) | 32 |
| BpiI | GAAGAC | 1 cut(s) | 428 |
| BsaJI | CCNNGG | 1 cut(s) | 251 |
| BsaWI | WCCGGW | 1 cut(s) | 74 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 389 |
| Bse1I | ACTGG | 1 cut(s) | 125 |
| BseAI | TCCGGA | 1 cut(s) | 74 |
| BseBI | CCWGG | 1 cut(s) | 365 |
| BseDI | CCNNGG | 1 cut(s) | 251 |
| BseGI | GGATG | 3 cut(s) | 71, 485, 491 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 389 |
| BseMII | CTCAG | 1 cut(s) | 259 |
| BseNI | ACTGG | 1 cut(s) | 125 |
| BseRI | GAGGAG | 3 cut(s) | 111, 345, 489 |
| BseYI | CCCAGC | 1 cut(s) | 84 |
| BshNI | GGYRCC | 1 cut(s) | 123 |
| BsiSI | CCGG | 1 cut(s) | 75 |
| BslFI | GGGAC | 1 cut(s) | 393 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 389 |
| BsmAI | GTCTC | 1 cut(s) | 338 |
| BsmFI | GGGAC | 1 cut(s) | 393 |
| Bsp13I | TCCGGA | 1 cut(s) | 74 |
| Bsp143I | GATC | 1 cut(s) | 351 |
| BspACI | CCGC | 2 cut(s) | 107, 483 |
| BspCNI | CTCAG | 1 cut(s) | 260 |
| BspEI | TCCGGA | 1 cut(s) | 74 |
| BspLI | GGNNCC | 2 cut(s) | 125, 381 |
| BspT107I | GGYRCC | 1 cut(s) | 123 |
| BspTI | CTTAAG | 1 cut(s) | 369 |
| BsrI | ACTGG | 1 cut(s) | 125 |
| BssECI | CCNNGG | 1 cut(s) | 251 |
| BssMI | GATC | 1 cut(s) | 351 |
| BssT1I | CCWWGG | 1 cut(s) | 251 |
| Bst2UI | CCWGG | 1 cut(s) | 365 |
| BstAFI | CTTAAG | 1 cut(s) | 369 |
| BstDEI | CTNAG | 1 cut(s) | 268 |
| BstF5I | GGATG | 3 cut(s) | 71, 485, 491 |
| BstH2I | RGCGCY | 1 cut(s) | 308 |
| BstHHI | GCGC | 1 cut(s) | 307 |
| BstKTI | GATC | 1 cut(s) | 354 |
| BstMAI | GTCTC | 1 cut(s) | 338 |
| BstMBI | GATC | 1 cut(s) | 351 |
| BstNI | CCWGG | 1 cut(s) | 365 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 32 |
| BstSCI | CCNGG | 1 cut(s) | 363 |
| BstV2I | GAAGAC | 1 cut(s) | 428 |
| BtrI | CACGTC | 1 cut(s) | 505 |
| BtsCI | GGATG | 3 cut(s) | 71, 485, 491 |
| BtsI | GCAGTG | 1 cut(s) | 471 |
| BtsIMutI | CAGTG | 1 cut(s) | 471 |
| CfoI | GCGC | 1 cut(s) | 307 |
| Cfr13I | GGNCC | 1 cut(s) | 380 |
| Csp6I | GTAC | 3 cut(s) | 66, 124, 276 |
| CviAII | CATG | 1 cut(s) | 459 |
| CviJI | RGCY | 4 cut(s) | 3, 102, 368, 411 |
| CviKI_1 | RGCY | 4 cut(s) | 3, 102, 368, 411 |
| CviQI | GTAC | 3 cut(s) | 66, 124, 276 |
| DdeI | CTNAG | 1 cut(s) | 268 |
| DpnI | GATC | 1 cut(s) | 353 |
| DpnII | GATC | 1 cut(s) | 351 |
| EciI | GGCGGA | 1 cut(s) | 122 |
| Eco130I | CCWWGG | 1 cut(s) | 251 |
| Eco47I | GGWCC | 1 cut(s) | 380 |
| EcoRII | CCWGG | 1 cut(s) | 363 |
| EcoT14I | CCWWGG | 1 cut(s) | 251 |
| ErhI | CCWWGG | 1 cut(s) | 251 |
| FaeI | CATG | 1 cut(s) | 462 |
| FaiI | YATR | 7 cut(s) | 40, 59, 228, 403, 449, 451, 460 |
| FaqI | GGGAC | 1 cut(s) | 393 |
| FatI | CATG | 1 cut(s) | 458 |
| FblI | GTMKAC | 1 cut(s) | 206 |
| FokI | GGATG | 3 cut(s) | 58, 492, 498 |
| FspBI | CTAG | 1 cut(s) | 4 |
| GlaI | GCGC | 1 cut(s) | 306 |
| GsaI | CCCAGC | 1 cut(s) | 88 |
| HaeII | RGCGCY | 1 cut(s) | 308 |
| HapII | CCGG | 1 cut(s) | 75 |
| HhaI | GCGC | 1 cut(s) | 307 |
| Hin1II | CATG | 1 cut(s) | 462 |
| Hin6I | GCGC | 1 cut(s) | 305 |
| HinP1I | GCGC | 1 cut(s) | 305 |
| HinfI | GANTC | 2 cut(s) | 166, 233 |
| HpaII | CCGG | 1 cut(s) | 75 |
| Hpy166II | GTNNAC | 1 cut(s) | 207 |
| Hpy188I | TCNGA | 1 cut(s) | 269 |
| Hpy188III | TCNNGA | 3 cut(s) | 25, 75, 327 |
| Hpy8I | GTNNAC | 1 cut(s) | 207 |
| HpyAV | CCTTC | 4 cut(s) | 284, 318, 369, 464 |
| HpyCH4IV | ACGT | 2 cut(s) | 425, 504 |
| HpyCH4V | TGCA | 4 cut(s) | 144, 323, 440, 456 |
| HpyF3I | CTNAG | 1 cut(s) | 268 |
| HpySE526I | ACGT | 2 cut(s) | 425, 504 |
| Hsp92II | CATG | 1 cut(s) | 462 |
| HspAI | GCGC | 1 cut(s) | 305 |
| Kpn2I | TCCGGA | 1 cut(s) | 74 |
| KpnI | GGTACC | 1 cut(s) | 127 |
| Kzo9I | GATC | 1 cut(s) | 351 |
| LmnI | GCTCC | 1 cut(s) | 302 |
| LpnPI | CCDG | 7 cut(s) | 3, 38, 70, 88, 106, 350, 377 |
| LweI | GCATC | 4 cut(s) | 80, 332, 443, 470 |
| MaeI | CTAG | 1 cut(s) | 4 |
| MaeII | ACGT | 2 cut(s) | 425, 504 |
| MaeIII | GTNAC | 2 cut(s) | 359, 500 |
| MalI | GATC | 1 cut(s) | 353 |
| MboI | GATC | 1 cut(s) | 351 |
| MboII | GAAGA | 2 cut(s) | 299, 433 |
| MluCI | AATT | 2 cut(s) | 151, 496 |
| MlyI | GAGTC | 1 cut(s) | 227 |
| MmeI | TCCRAC | 1 cut(s) | 280 |
| MnlI | CCTC | 9 cut(s) | 25, 89, 92, 236, 263, 323, 467, 470, 485 |
| MroI | TCCGGA | 1 cut(s) | 74 |
| MseI | TTAA | 1 cut(s) | 370 |
| MspCI | CTTAAG | 1 cut(s) | 369 |
| MspI | CCGG | 1 cut(s) | 75 |
| MspR9I | CCNGG | 1 cut(s) | 365 |
| MvaI | CCWGG | 1 cut(s) | 365 |
| NdeII | GATC | 1 cut(s) | 351 |
| NlaIII | CATG | 1 cut(s) | 462 |
| NlaIV | GGNNCC | 2 cut(s) | 125, 381 |
| NmuCI | GTSAC | 1 cut(s) | 500 |
| PfeI | GAWTC | 1 cut(s) | 166 |
| PleI | GAGTC | 1 cut(s) | 227 |
| PpsI | GAGTC | 1 cut(s) | 227 |
| PshAI | GACNNNNGTC | 1 cut(s) | 32 |
| Psp6I | CCWGG | 1 cut(s) | 363 |
| PspFI | CCCAGC | 1 cut(s) | 84 |
| PspGI | CCWGG | 1 cut(s) | 363 |
| PspN4I | GGNNCC | 2 cut(s) | 125, 381 |
| PspPI | GGNCC | 1 cut(s) | 380 |
| RsaI | GTAC | 3 cut(s) | 67, 125, 277 |
| RsaNI | GTAC | 3 cut(s) | 66, 124, 276 |
| SaqAI | TTAA | 1 cut(s) | 370 |
| Sau3AI | GATC | 1 cut(s) | 351 |
| Sau96I | GGNCC | 1 cut(s) | 380 |
| SchI | GAGTC | 1 cut(s) | 227 |
| ScrFI | CCNGG | 1 cut(s) | 365 |
| SetI | ASST | 7 cut(s) | 45, 274, 366, 413, 428, 438, 507 |
| SfaNI | GCATC | 4 cut(s) | 80, 332, 443, 470 |
| SinI | GGWCC | 1 cut(s) | 380 |
| SmlI | CTYRAG | 1 cut(s) | 369 |
| SmoI | CTYRAG | 1 cut(s) | 369 |
| Sse9I | AATT | 2 cut(s) | 151, 496 |
| SsiI | CCGC | 2 cut(s) | 107, 483 |
| SspMI | CTAG | 1 cut(s) | 4 |
| StyD4I | CCNGG | 1 cut(s) | 363 |
| StyI | CCWWGG | 1 cut(s) | 251 |
| TaiI | ACGT | 2 cut(s) | 428, 507 |
| TaqI | TCGA | 1 cut(s) | 236 |
| TaqII | GACCGA | 1 cut(s) | 397 |
| TasI | AATT | 2 cut(s) | 151, 496 |
| TfiI | GAWTC | 1 cut(s) | 166 |
| Tru1I | TTAA | 1 cut(s) | 370 |
| Tru9I | TTAA | 1 cut(s) | 370 |
| TscAI | CASTG | 1 cut(s) | 471 |
| TseFI | GTSAC | 1 cut(s) | 500 |
| Tsp45I | GTSAC | 1 cut(s) | 500 |
| TspDTI | ATGAA | 1 cut(s) | 390 |
| TspGWI | ACGGA | 1 cut(s) | 159 |
| TspRI | CASTG | 1 cut(s) | 471 |
| Vha464I | CTTAAG | 1 cut(s) | 369 |
| VpaK11BI | GGWCC | 1 cut(s) | 380 |
| XmiI | GTMKAC | 1 cut(s) | 206 |
| XspI | CTAG | 1 cut(s) | 4 |