ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 5 - 211 | 1e-18 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 237 |
| Acc65I | GGTACC | 1 cut(s) | 258 |
| AccB1I | GGYRCC | 3 cut(s) | 258, 309, 497 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 337 |
| AciI | CCGC | 4 cut(s) | 238, 342, 701, 779 |
| AclWI | GGATC | 2 cut(s) | 372, 904 |
| AcoI | YGGCCR | 4 cut(s) | 73, 328, 339, 1262 |
| AcsI | RAATTY | 1 cut(s) | 859 |
| AcuI | CTGAAG | 3 cut(s) | 166, 356, 689 |
| AcvI | CACGTG | 1 cut(s) | 634 |
| AcyI | GRCGYC | 2 cut(s) | 234, 310 |
| AfaI | GTAC | 3 cut(s) | 260, 823, 1022 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 286, 337, 558, 656 |
| AgsI | TTSAA | 7 cut(s) | 53, 62, 424, 736, 800, 859, 1038 |
| AjiI | CACGTC | 1 cut(s) | 568 |
| AjnI | CCWGG | 5 cut(s) | 501, 551, 605, 690, 1046 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1145, 1169, 1177, 1201 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1018, 1050 |
| AluBI | AGCT | 7 cut(s) | 56, 517, 991, 1109, 1124, 1160, 1294 |
| AluI | AGCT | 7 cut(s) | 56, 517, 991, 1109, 1124, 1160, 1294 |
| Alw21I | GWGCWC | 1 cut(s) | 519 |
| Alw26I | GTCTC | 1 cut(s) | 1133 |
| AlwI | GGATC | 2 cut(s) | 372, 904 |
| AoxI | GGCC | 5 cut(s) | 73, 328, 339, 916, 1262 |
| ApeKI | GCWGC | 3 cut(s) | 45, 142, 925 |
| ApoI | RAATTY | 1 cut(s) | 859 |
| Asp718I | GGTACC | 1 cut(s) | 258 |
| AspA2I | CCTAGG | 1 cut(s) | 526 |
| AspLEI | GCGC | 3 cut(s) | 312, 544, 754 |
| AspS9I | GGNCC | 2 cut(s) | 277, 916 |
| AsuC2I | CCSGG | 1 cut(s) | 914 |
| AsuHPI | GGTGA | 6 cut(s) | 541, 575, 632, 671, 1073, 1261 |
| AvaII | GGWCC | 1 cut(s) | 277 |
| AvrII | CCTAGG | 1 cut(s) | 526 |
| BaeGI | GKGCMC | 1 cut(s) | 502 |
| BanI | GGYRCC | 3 cut(s) | 258, 309, 497 |
| BanII | GRGCYC | 1 cut(s) | 519 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 242, 274 |
| BbrPI | CACGTG | 1 cut(s) | 634 |
| BbsI | GAAGAC | 1 cut(s) | 172 |
| Bbv12I | GWGCWC | 1 cut(s) | 519 |
| BbvI | GCAGC | 3 cut(s) | 32, 129, 937 |
| BccI | CCATC | 5 cut(s) | 94, 218, 360, 844, 1160 |
| BceAI | ACGGC | 3 cut(s) | 343, 529, 765 |
| BciT130I | CCWGG | 5 cut(s) | 503, 553, 607, 692, 1048 |
| BcnI | CCSGG | 1 cut(s) | 914 |
| BcoDI | GTCTC | 1 cut(s) | 1133 |
| BfaI | CTAG | 4 cut(s) | 527, 846, 992, 1241 |
| BfmI | CTRYAG | 1 cut(s) | 22 |
| BfoI | RGCGCY | 1 cut(s) | 313 |
| BglII | AGATCT | 1 cut(s) | 6 |
| BisI | GCNGC | 5 cut(s) | 46, 143, 342, 701, 926 |
| BlnI | CCTAGG | 1 cut(s) | 526 |
| BlpI | GCTNAGC | 1 cut(s) | 1120 |
| BlsI | GCNGC | 5 cut(s) | 47, 144, 343, 702, 927 |
| Bme1390I | CCNGG | 6 cut(s) | 503, 553, 607, 692, 914, 1048 |
| Bme18I | GGWCC | 1 cut(s) | 277 |
| BmgBI | CACGTC | 1 cut(s) | 568 |
| BmgT120I | GGNCC | 2 cut(s) | 277, 916 |
| BmiI | GGNNCC | 4 cut(s) | 260, 311, 499, 917 |
| BmrFI | CCNGG | 6 cut(s) | 503, 553, 607, 692, 914, 1048 |
| BmrI | ACTGGG | 1 cut(s) | 327 |
| BmsI | GCATC | 5 cut(s) | 280, 302, 499, 563, 1227 |
| BmuI | ACTGGG | 1 cut(s) | 327 |
| BpiI | GAAGAC | 1 cut(s) | 172 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1120 |
| BpuMI | CCSGG | 1 cut(s) | 914 |
| BsaAI | YACGTR | 1 cut(s) | 634 |
| BsaHI | GRCGYC | 2 cut(s) | 234, 310 |
| BsaJI | CCNNGG | 5 cut(s) | 401, 501, 526, 913, 1265 |
| BsaWI | WCCGGW | 2 cut(s) | 723, 1209 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 890, 920 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 286, 337, 558, 656 |
| Bse118I | RCCGGY | 2 cut(s) | 576, 918 |
| Bse1I | ACTGG | 3 cut(s) | 322, 1028, 1147 |
| BseBI | CCWGG | 5 cut(s) | 503, 553, 607, 692, 1048 |
| BseDI | CCNNGG | 5 cut(s) | 401, 501, 526, 913, 1265 |
| BseGI | GGATG | 9 cut(s) | 229, 295, 448, 511, 619, 855, 1171, 1231, 1242 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 286, 337, 558, 656 |
| BseMII | CTCAG | 1 cut(s) | 96 |
| BseNI | ACTGG | 3 cut(s) | 322, 1028, 1147 |
| BseRI | GAGGAG | 3 cut(s) | 980, 1022, 1304 |
| BseSI | GKGCMC | 1 cut(s) | 502 |
| BseX3I | CGGCCG | 1 cut(s) | 1262 |
| BseXI | GCAGC | 3 cut(s) | 32, 129, 937 |
| BseYI | CCCAGC | 1 cut(s) | 1124 |
| Bsh1285I | CGRYCG | 2 cut(s) | 43, 1265 |
| BshFI | GGCC | 5 cut(s) | 75, 330, 341, 918, 1264 |
| BshNI | GGYRCC | 3 cut(s) | 258, 309, 497 |
| BsiEI | CGRYCG | 2 cut(s) | 43, 1265 |
| BsiHKAI | GWGCWC | 1 cut(s) | 519 |
| BsiSI | CCGG | 6 cut(s) | 577, 724, 913, 919, 1210, 1234 |
| BslFI | GGGAC | 2 cut(s) | 401, 820 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 286, 337, 558, 656 |
| BsmAI | GTCTC | 1 cut(s) | 1133 |
| BsmFI | GGGAC | 2 cut(s) | 401, 820 |
| BsnI | GGCC | 5 cut(s) | 75, 330, 341, 918, 1264 |
| Bsp1286I | GDGCHC | 2 cut(s) | 502, 519 |
| Bsp143I | GATC | 4 cut(s) | 6, 364, 900, 909 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1120 |
| Bsp19I | CCATGG | 1 cut(s) | 401 |
| BspACI | CCGC | 4 cut(s) | 238, 342, 701, 779 |
| BspANI | GGCC | 5 cut(s) | 75, 330, 341, 918, 1264 |
| BspCNI | CTCAG | 1 cut(s) | 97 |
| BspLI | GGNNCC | 4 cut(s) | 260, 311, 499, 917 |
| BspPI | GGATC | 2 cut(s) | 372, 904 |
| BspQI | GCTCTTC | 2 cut(s) | 63, 690 |
| BspT107I | GGYRCC | 3 cut(s) | 258, 309, 497 |
| BsrFI | RCCGGY | 2 cut(s) | 576, 918 |
| BsrI | ACTGG | 3 cut(s) | 322, 1028, 1147 |
| BssAI | RCCGGY | 2 cut(s) | 576, 918 |
| BssECI | CCNNGG | 5 cut(s) | 401, 501, 526, 913, 1265 |
| BssMI | GATC | 4 cut(s) | 6, 364, 900, 909 |
| BssNI | GRCGYC | 2 cut(s) | 234, 310 |
| BssT1I | CCWWGG | 2 cut(s) | 401, 526 |
| Bst2UI | CCWGG | 5 cut(s) | 503, 553, 607, 692, 1048 |
| Bst4CI | ACNGT | 4 cut(s) | 23, 41, 489, 659 |
| Bst6I | CTCTTC | 7 cut(s) | 63, 218, 397, 402, 690, 887, 1311 |
| BstACI | GRCGYC | 2 cut(s) | 234, 310 |
| BstBAI | YACGTR | 1 cut(s) | 634 |
| BstC8I | GCNNGC | 4 cut(s) | 332, 578, 972, 989 |
| BstDEI | CTNAG | 4 cut(s) | 105, 1110, 1120, 1255 |
| BstDSI | CCRYGG | 1 cut(s) | 401 |
| BstEII | GGTNACC | 1 cut(s) | 659 |
| BstF5I | GGATG | 9 cut(s) | 229, 295, 448, 511, 619, 855, 1171, 1231, 1242 |
| BstH2I | RGCGCY | 1 cut(s) | 313 |
| BstHHI | GCGC | 3 cut(s) | 312, 544, 754 |
| BstKTI | GATC | 4 cut(s) | 9, 367, 903, 912 |
| BstMAI | GTCTC | 1 cut(s) | 1133 |
| BstMBI | GATC | 4 cut(s) | 6, 364, 900, 909 |
| BstMCI | CGRYCG | 2 cut(s) | 43, 1265 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 290, 709, 749 |
| BstNI | CCWGG | 5 cut(s) | 503, 553, 607, 692, 1048 |
| BstNSI | RCATGY | 2 cut(s) | 974, 1090 |
| BstPI | GGTNACC | 1 cut(s) | 659 |
| BstSCI | CCNGG | 6 cut(s) | 501, 551, 605, 690, 912, 1046 |
| BstSFI | CTRYAG | 1 cut(s) | 22 |
| BstSLI | GKGCMC | 1 cut(s) | 502 |
| BstV1I | GCAGC | 3 cut(s) | 32, 129, 937 |
| BstV2I | GAAGAC | 1 cut(s) | 172 |
| BstX2I | RGATCY | 2 cut(s) | 6, 364 |
| BstYI | RGATCY | 2 cut(s) | 6, 364 |
| BstZI | CGGCCG | 1 cut(s) | 1262 |
| BsuRI | GGCC | 5 cut(s) | 75, 330, 341, 918, 1264 |
| BtgI | CCRYGG | 1 cut(s) | 401 |
| BtrI | CACGTC | 1 cut(s) | 568 |
| BtsCI | GGATG | 9 cut(s) | 229, 295, 448, 511, 619, 855, 1171, 1231, 1242 |
| BtsI | GCAGTG | 2 cut(s) | 597, 719 |
| BtsIMutI | CAGTG | 3 cut(s) | 315, 597, 719 |
| Cac8I | GCNNGC | 4 cut(s) | 332, 578, 972, 989 |
| CfoI | GCGC | 3 cut(s) | 312, 544, 754 |
| Cfr10I | RCCGGY | 2 cut(s) | 576, 918 |
| Cfr13I | GGNCC | 2 cut(s) | 277, 916 |
| Csp6I | GTAC | 3 cut(s) | 259, 822, 1021 |
| CviAII | CATG | 9 cut(s) | 15, 281, 402, 437, 755, 814, 971, 1087, 1204 |
| CviQI | GTAC | 3 cut(s) | 259, 822, 1021 |
| DdeI | CTNAG | 4 cut(s) | 105, 1110, 1120, 1255 |
| DinI | GGCGCC | 1 cut(s) | 311 |
| DpnI | GATC | 4 cut(s) | 8, 366, 902, 911 |
| DpnII | GATC | 4 cut(s) | 6, 364, 900, 909 |
| EaeI | YGGCCR | 4 cut(s) | 73, 328, 339, 1262 |
| EagI | CGGCCG | 1 cut(s) | 1262 |
| Eam1104I | CTCTTC | 7 cut(s) | 63, 218, 397, 402, 690, 887, 1311 |
| EarI | CTCTTC | 7 cut(s) | 63, 218, 397, 402, 690, 887, 1311 |
| Ecl136II | GAGCTC | 1 cut(s) | 517 |
| EclXI | CGGCCG | 1 cut(s) | 1262 |
| Eco130I | CCWWGG | 2 cut(s) | 401, 526 |
| Eco24I | GRGCYC | 1 cut(s) | 519 |
| Eco47I | GGWCC | 1 cut(s) | 277 |
| Eco52I | CGGCCG | 1 cut(s) | 1262 |
| Eco53kI | GAGCTC | 1 cut(s) | 517 |
| Eco57I | CTGAAG | 3 cut(s) | 166, 356, 689 |
| Eco72I | CACGTG | 1 cut(s) | 634 |
| Eco91I | GGTNACC | 1 cut(s) | 659 |
| EcoICRI | GAGCTC | 1 cut(s) | 517 |
| EcoO65I | GGTNACC | 1 cut(s) | 659 |
| EcoRI | GAATTC | 1 cut(s) | 859 |
| EcoRII | CCWGG | 5 cut(s) | 501, 551, 605, 690, 1046 |
| EcoT14I | CCWWGG | 2 cut(s) | 401, 526 |
| EcoT22I | ATGCAT | 1 cut(s) | 295 |
| EcoT38I | GRGCYC | 1 cut(s) | 519 |
| EgeI | GGCGCC | 1 cut(s) | 311 |
| EheI | GGCGCC | 1 cut(s) | 311 |
| ErhI | CCWWGG | 2 cut(s) | 401, 526 |
| FaeI | CATG | 9 cut(s) | 18, 284, 405, 440, 758, 817, 974, 1090, 1207 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 687, 719, 1103, 1135, 1169, 1201 |
| FaqI | GGGAC | 2 cut(s) | 401, 820 |
| FatI | CATG | 9 cut(s) | 14, 280, 401, 436, 754, 813, 970, 1086, 1203 |
| Fnu4HI | GCNGC | 5 cut(s) | 46, 143, 342, 701, 926 |
| FokI | GGATG | 9 cut(s) | 236, 302, 455, 518, 626, 862, 1178, 1238, 1249 |
| FriOI | GRGCYC | 1 cut(s) | 519 |
| Fsp4HI | GCNGC | 5 cut(s) | 46, 143, 342, 701, 926 |
| FspBI | CTAG | 4 cut(s) | 527, 846, 992, 1241 |
| GlaI | GCGC | 3 cut(s) | 311, 543, 753 |
| GluI | GCNGC | 5 cut(s) | 46, 143, 342, 701, 926 |
| GsaI | CCCAGC | 1 cut(s) | 1128 |
| HaeII | RGCGCY | 1 cut(s) | 313 |
| HaeIII | GGCC | 5 cut(s) | 75, 330, 341, 918, 1264 |
| HapII | CCGG | 6 cut(s) | 577, 724, 913, 919, 1210, 1234 |
| HhaI | GCGC | 3 cut(s) | 312, 544, 754 |
| Hin1I | GRCGYC | 2 cut(s) | 234, 310 |
| Hin1II | CATG | 9 cut(s) | 18, 284, 405, 440, 758, 817, 974, 1090, 1207 |
| Hin6I | GCGC | 3 cut(s) | 310, 542, 752 |
| HinP1I | GCGC | 3 cut(s) | 310, 542, 752 |
| HinfI | GANTC | 5 cut(s) | 389, 430, 790, 808, 1114 |
| HpaII | CCGG | 6 cut(s) | 577, 724, 913, 919, 1210, 1234 |
| HphI | GGTGA | 6 cut(s) | 541, 575, 632, 671, 1073, 1261 |
| Hpy166II | GTNNAC | 3 cut(s) | 118, 549, 1252 |
| Hpy188I | TCNGA | 8 cut(s) | 106, 165, 708, 1104, 1216, 1225, 1276, 1312 |
| Hpy188III | TCNNGA | 4 cut(s) | 198, 230, 767, 831 |
| Hpy8I | GTNNAC | 3 cut(s) | 118, 549, 1252 |
| HpyAV | CCTTC | 7 cut(s) | 106, 442, 612, 653, 752, 794, 1171 |
| HpyCH4III | ACNGT | 4 cut(s) | 23, 41, 489, 659 |
| HpyCH4IV | ACGT | 6 cut(s) | 152, 234, 264, 567, 633, 666 |
| HpyCH4V | TGCA | 3 cut(s) | 293, 436, 925 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 290, 709, 749 |
| HpyF3I | CTNAG | 4 cut(s) | 105, 1110, 1120, 1255 |
| HpySE526I | ACGT | 6 cut(s) | 152, 234, 264, 567, 633, 666 |
| Hsp92I | GRCGYC | 2 cut(s) | 234, 310 |
| Hsp92II | CATG | 9 cut(s) | 18, 284, 405, 440, 758, 817, 974, 1090, 1207 |
| HspAI | GCGC | 3 cut(s) | 310, 542, 752 |
| KasI | GGCGCC | 1 cut(s) | 309 |
| KpnI | GGTACC | 1 cut(s) | 262 |
| KroI | GCCGGC | 1 cut(s) | 576 |
| KroNI | GCCGGC | 1 cut(s) | 578 |
| Kzo9I | GATC | 4 cut(s) | 6, 364, 900, 909 |
| LguI | GCTCTTC | 2 cut(s) | 63, 690 |
| LmnI | GCTCC | 3 cut(s) | 967, 1291, 1306 |
| Lsp1109I | GCAGC | 3 cut(s) | 32, 129, 937 |
| LweI | GCATC | 5 cut(s) | 280, 302, 499, 563, 1227 |
| MaeI | CTAG | 4 cut(s) | 527, 846, 992, 1241 |
| MaeII | ACGT | 6 cut(s) | 152, 234, 264, 567, 633, 666 |
| MaeIII | GTNAC | 5 cut(s) | 467, 563, 659, 936, 1042 |
| MalI | GATC | 4 cut(s) | 8, 366, 902, 911 |
| MboI | GATC | 4 cut(s) | 6, 364, 900, 909 |
| MflI | RGATCY | 2 cut(s) | 6, 364 |
| MhlI | GDGCHC | 2 cut(s) | 502, 519 |
| MluCI | AATT | 4 cut(s) | 166, 651, 834, 859 |
| Mly113I | GGCGCC | 1 cut(s) | 310 |
| MlyI | GAGTC | 3 cut(s) | 383, 799, 802 |
| Mph1103I | ATGCAT | 1 cut(s) | 295 |
| MroNI | GCCGGC | 1 cut(s) | 576 |
| MseI | TTAA | 1 cut(s) | 33 |
| MslI | CAYNNNNRTG | 4 cut(s) | 267, 441, 848, 1224 |
| MspI | CCGG | 6 cut(s) | 577, 724, 913, 919, 1210, 1234 |
| MspR9I | CCNGG | 6 cut(s) | 503, 553, 607, 692, 914, 1048 |
| MvaI | CCWGG | 5 cut(s) | 503, 553, 607, 692, 1048 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 290, 709, 749 |
| NaeI | GCCGGC | 1 cut(s) | 578 |
| NarI | GGCGCC | 1 cut(s) | 310 |
| NciI | CCSGG | 1 cut(s) | 914 |
| NcoI | CCATGG | 1 cut(s) | 401 |
| NdeII | GATC | 4 cut(s) | 6, 364, 900, 909 |
| NgoMIV | GCCGGC | 1 cut(s) | 576 |
| NlaIII | CATG | 9 cut(s) | 18, 284, 405, 440, 758, 817, 974, 1090, 1207 |
| NlaIV | GGNNCC | 4 cut(s) | 260, 311, 499, 917 |
| NmeAIII | GCCGAG | 3 cut(s) | 538, 719, 1290 |
| NmuCI | GTSAC | 4 cut(s) | 563, 659, 936, 1042 |
| NsiI | ATGCAT | 1 cut(s) | 295 |
| NspI | RCATGY | 2 cut(s) | 974, 1090 |
| PaeI | GCATGC | 1 cut(s) | 974 |
| PciSI | GCTCTTC | 2 cut(s) | 63, 690 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 45, 663 |
| PdiI | GCCGGC | 1 cut(s) | 578 |
| PfeI | GAWTC | 2 cut(s) | 430, 1114 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 337 |
| PfoI | TCCNGGA | 1 cut(s) | 690 |
| PkrI | GCNGC | 5 cut(s) | 47, 144, 343, 702, 927 |
| PleI | GAGTC | 3 cut(s) | 383, 798, 802 |
| PluTI | GGCGCC | 1 cut(s) | 313 |
| PmaCI | CACGTG | 1 cut(s) | 634 |
| PmlI | CACGTG | 1 cut(s) | 634 |
| PpsI | GAGTC | 3 cut(s) | 383, 798, 802 |
| Ppu21I | YACGTR | 1 cut(s) | 634 |
| Psp124BI | GAGCTC | 1 cut(s) | 519 |
| Psp6I | CCWGG | 5 cut(s) | 501, 551, 605, 690, 1046 |
| PspCI | CACGTG | 1 cut(s) | 634 |
| PspEI | GGTNACC | 1 cut(s) | 659 |
| PspFI | CCCAGC | 1 cut(s) | 1124 |
| PspGI | CCWGG | 5 cut(s) | 501, 551, 605, 690, 1046 |
| PspN4I | GGNNCC | 4 cut(s) | 260, 311, 499, 917 |
| PspPI | GGNCC | 2 cut(s) | 277, 916 |
| PsuI | RGATCY | 2 cut(s) | 6, 364 |
| RsaI | GTAC | 3 cut(s) | 260, 823, 1022 |
| RsaNI | GTAC | 3 cut(s) | 259, 822, 1021 |
| RseI | CAYNNNNRTG | 4 cut(s) | 267, 441, 848, 1224 |
| SacI | GAGCTC | 1 cut(s) | 519 |
| SapI | GCTCTTC | 2 cut(s) | 63, 690 |
| SaqAI | TTAA | 1 cut(s) | 33 |
| SatI | GCNGC | 5 cut(s) | 46, 143, 342, 701, 926 |
| Sau3AI | GATC | 4 cut(s) | 6, 364, 900, 909 |
| Sau96I | GGNCC | 2 cut(s) | 277, 916 |
| SchI | GAGTC | 3 cut(s) | 383, 799, 802 |
| ScrFI | CCNGG | 6 cut(s) | 503, 553, 607, 692, 914, 1048 |
| SduI | GDGCHC | 2 cut(s) | 502, 519 |
| SfaNI | GCATC | 5 cut(s) | 280, 302, 499, 563, 1227 |
| SfcI | CTRYAG | 1 cut(s) | 22 |
| SfoI | GGCGCC | 1 cut(s) | 311 |
| SinI | GGWCC | 1 cut(s) | 277 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 267, 441, 848, 1224 |
| SphI | GCATGC | 1 cut(s) | 974 |
| Sse9I | AATT | 4 cut(s) | 166, 651, 834, 859 |
| SsiI | CCGC | 4 cut(s) | 238, 342, 701, 779 |
| SspDI | GGCGCC | 1 cut(s) | 309 |
| SspMI | CTAG | 4 cut(s) | 527, 846, 992, 1241 |
| SstI | GAGCTC | 1 cut(s) | 519 |
| StyD4I | CCNGG | 6 cut(s) | 501, 551, 605, 690, 912, 1046 |
| StyI | CCWWGG | 2 cut(s) | 401, 526 |
| TaaI | ACNGT | 4 cut(s) | 23, 41, 489, 659 |
| TaiI | ACGT | 6 cut(s) | 155, 237, 267, 570, 636, 669 |
| TaqI | TCGA | 4 cut(s) | 248, 254, 766, 903 |
| TasI | AATT | 4 cut(s) | 166, 651, 834, 859 |
| TatI | WGTACW | 1 cut(s) | 1020 |
| TauI | GCSGC | 2 cut(s) | 344, 703 |
| TfiI | GAWTC | 2 cut(s) | 430, 1114 |
| Tru1I | TTAA | 1 cut(s) | 33 |
| Tru9I | TTAA | 1 cut(s) | 33 |
| TscAI | CASTG | 3 cut(s) | 322, 597, 719 |
| TseFI | GTSAC | 4 cut(s) | 563, 659, 936, 1042 |
| TseI | GCWGC | 3 cut(s) | 45, 142, 925 |
| Tsp45I | GTSAC | 4 cut(s) | 563, 659, 936, 1042 |
| TspDTI | ATGAA | 4 cut(s) | 125, 771, 1192, 1298 |
| TspGWI | ACGGA | 2 cut(s) | 302, 1070 |
| TspRI | CASTG | 3 cut(s) | 322, 597, 719 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 337 |
| VpaK11BI | GGWCC | 1 cut(s) | 277 |
| XapI | RAATTY | 1 cut(s) | 859 |
| XceI | RCATGY | 2 cut(s) | 974, 1090 |
| XmaJI | CCTAGG | 1 cut(s) | 526 |
| XspI | CTAG | 4 cut(s) | 527, 846, 992, 1241 |
| ZraI | GACGTC | 1 cut(s) | 235 |
| Zsp2I | ATGCAT | 1 cut(s) | 295 |