Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 135 |
| AciI | CCGC | 2 cut(s) | 156, 291 |
| AclWI | GGATC | 2 cut(s) | 363, 387 |
| AcsI | RAATTY | 1 cut(s) | 199 |
| AcuI | CTGAAG | 1 cut(s) | 86 |
| AdeI | CACNNNGTG | 1 cut(s) | 558 |
| AfaI | GTAC | 2 cut(s) | 343, 601 |
| AgeI | ACCGGT | 1 cut(s) | 463 |
| AgsI | TTSAA | 3 cut(s) | 170, 178, 427 |
| AjnI | CCWGG | 1 cut(s) | 295 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 87, 119 |
| AluBI | AGCT | 1 cut(s) | 370 |
| AluI | AGCT | 1 cut(s) | 370 |
| Alw21I | GWGCWC | 1 cut(s) | 554 |
| Alw26I | GTCTC | 1 cut(s) | 107 |
| Alw44I | GTGCAC | 1 cut(s) | 550 |
| AlwI | GGATC | 2 cut(s) | 363, 387 |
| ApaLI | GTGCAC | 1 cut(s) | 550 |
| ApeKI | GCWGC | 1 cut(s) | 367 |
| ApoI | RAATTY | 1 cut(s) | 199 |
| AseI | ATTAAT | 1 cut(s) | 144 |
| AsiGI | ACCGGT | 1 cut(s) | 463 |
| AspA2I | CCTAGG | 2 cut(s) | 505, 529 |
| AspLEI | GCGC | 1 cut(s) | 582 |
| AspS9I | GGNCC | 4 cut(s) | 293, 461, 466, 542 |
| AsuC2I | CCSGG | 1 cut(s) | 470 |
| AsuHPI | GGTGA | 1 cut(s) | 431 |
| AvaII | GGWCC | 4 cut(s) | 293, 461, 466, 542 |
| AvrII | CCTAGG | 2 cut(s) | 505, 529 |
| BaeGI | GKGCMC | 1 cut(s) | 554 |
| Bbv12I | GWGCWC | 1 cut(s) | 554 |
| BbvI | GCAGC | 1 cut(s) | 379 |
| BccI | CCATC | 3 cut(s) | 188, 273, 452 |
| BciT130I | CCWGG | 1 cut(s) | 297 |
| BcnI | CCSGG | 1 cut(s) | 470 |
| BcoDI | GTCTC | 1 cut(s) | 107 |
| BfaI | CTAG | 4 cut(s) | 212, 278, 506, 530 |
| BglII | AGATCT | 1 cut(s) | 274 |
| BisI | GCNGC | 1 cut(s) | 368 |
| BlnI | CCTAGG | 2 cut(s) | 505, 529 |
| BlsI | GCNGC | 1 cut(s) | 369 |
| Bme1390I | CCNGG | 2 cut(s) | 297, 470 |
| Bme18I | GGWCC | 4 cut(s) | 293, 461, 466, 542 |
| BmgT120I | GGNCC | 4 cut(s) | 293, 461, 466, 542 |
| BmiI | GGNNCC | 2 cut(s) | 303, 543 |
| BmrFI | CCNGG | 2 cut(s) | 297, 470 |
| BmsI | GCATC | 1 cut(s) | 37 |
| BpuMI | CCSGG | 1 cut(s) | 470 |
| BsaBI | GATNNNNATC | 1 cut(s) | 354 |
| BsaJI | CCNNGG | 5 cut(s) | 159, 296, 404, 505, 529 |
| BsaWI | WCCGGW | 1 cut(s) | 463 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 222, 252 |
| Bse118I | RCCGGY | 1 cut(s) | 463 |
| Bse3DI | GCAATG | 1 cut(s) | 49 |
| Bse8I | GATNNNNATC | 1 cut(s) | 354 |
| BseBI | CCWGG | 1 cut(s) | 297 |
| BseDI | CCNNGG | 5 cut(s) | 159, 296, 404, 505, 529 |
| BseGI | GGATG | 1 cut(s) | 222 |
| BseJI | GATNNNNATC | 1 cut(s) | 354 |
| BseMI | GCAATG | 1 cut(s) | 49 |
| BseMII | CTCAG | 1 cut(s) | 31 |
| BseSI | GKGCMC | 1 cut(s) | 554 |
| BseXI | GCAGC | 1 cut(s) | 379 |
| BsgI | GTGCAG | 1 cut(s) | 263 |
| BshTI | ACCGGT | 1 cut(s) | 463 |
| BsiHKAI | GWGCWC | 1 cut(s) | 554 |
| BsiSI | CCGG | 2 cut(s) | 464, 469 |
| BsiWI | CGTACG | 1 cut(s) | 341 |
| BslFI | GGGAC | 2 cut(s) | 75, 555 |
| BsmAI | GTCTC | 1 cut(s) | 107 |
| BsmBI | CGTCTC | 1 cut(s) | 107 |
| BsmFI | GGGAC | 2 cut(s) | 75, 555 |
| Bsp1286I | GDGCHC | 1 cut(s) | 554 |
| Bsp1407I | TGTACA | 1 cut(s) | 599 |
| Bsp143I | GATC | 4 cut(s) | 274, 355, 379, 388 |
| BspACI | CCGC | 2 cut(s) | 156, 291 |
| BspCNI | CTCAG | 1 cut(s) | 30 |
| BspLI | GGNNCC | 2 cut(s) | 303, 543 |
| BspPI | GGATC | 2 cut(s) | 363, 387 |
| BsrDI | GCAATG | 1 cut(s) | 49 |
| BsrFI | RCCGGY | 1 cut(s) | 463 |
| BsrGI | TGTACA | 1 cut(s) | 599 |
| BssAI | RCCGGY | 1 cut(s) | 463 |
| BssECI | CCNNGG | 5 cut(s) | 159, 296, 404, 505, 529 |
| BssMI | GATC | 4 cut(s) | 274, 355, 379, 388 |
| BssT1I | CCWWGG | 4 cut(s) | 159, 404, 505, 529 |
| Bst2UI | CCWGG | 1 cut(s) | 297 |
| BstAUI | TGTACA | 1 cut(s) | 599 |
| BstDEI | CTNAG | 4 cut(s) | 17, 54, 383, 606 |
| BstF5I | GGATG | 1 cut(s) | 222 |
| BstHHI | GCGC | 1 cut(s) | 582 |
| BstKTI | GATC | 4 cut(s) | 277, 358, 382, 391 |
| BstMAI | GTCTC | 1 cut(s) | 107 |
| BstMBI | GATC | 4 cut(s) | 274, 355, 379, 388 |
| BstNI | CCWGG | 1 cut(s) | 297 |
| BstSCI | CCNGG | 2 cut(s) | 295, 468 |
| BstSLI | GKGCMC | 1 cut(s) | 554 |
| BstV1I | GCAGC | 1 cut(s) | 379 |
| BstX2I | RGATCY | 2 cut(s) | 274, 379 |
| BstYI | RGATCY | 2 cut(s) | 274, 379 |
| BtsCI | GGATG | 1 cut(s) | 222 |
| BtsI | GCAGTG | 1 cut(s) | 600 |
| BtsIMutI | CAGTG | 1 cut(s) | 600 |
| CfoI | GCGC | 1 cut(s) | 582 |
| Cfr10I | RCCGGY | 1 cut(s) | 463 |
| Cfr13I | GGNCC | 4 cut(s) | 293, 461, 466, 542 |
| CpoI | CGGWCCG | 1 cut(s) | 466 |
| CseI | GACGC | 1 cut(s) | 467 |
| Csp6I | GTAC | 2 cut(s) | 342, 600 |
| CspAI | ACCGGT | 1 cut(s) | 463 |
| CspI | CGGWCCG | 1 cut(s) | 466 |
| CviAII | CATG | 1 cut(s) | 7 |
| CviJI | RGCY | 6 cut(s) | 62, 165, 333, 370, 492, 503 |
| CviKI_1 | RGCY | 6 cut(s) | 62, 165, 333, 370, 492, 503 |
| CviQI | GTAC | 2 cut(s) | 342, 600 |
| DdeI | CTNAG | 4 cut(s) | 17, 54, 383, 606 |
| DpnI | GATC | 4 cut(s) | 276, 357, 381, 390 |
| DpnII | GATC | 4 cut(s) | 274, 355, 379, 388 |
| DraIII | CACNNNGTG | 1 cut(s) | 558 |
| Eco130I | CCWWGG | 4 cut(s) | 159, 404, 505, 529 |
| Eco32I | GATATC | 1 cut(s) | 78 |
| Eco47I | GGWCC | 4 cut(s) | 293, 461, 466, 542 |
| Eco57I | CTGAAG | 1 cut(s) | 86 |
| EcoRII | CCWGG | 1 cut(s) | 295 |
| EcoRV | GATATC | 1 cut(s) | 78 |
| EcoT14I | CCWWGG | 4 cut(s) | 159, 404, 505, 529 |
| ErhI | CCWWGG | 4 cut(s) | 159, 404, 505, 529 |
| Esp3I | CGTCTC | 1 cut(s) | 107 |
| FaeI | CATG | 1 cut(s) | 10 |
| FaiI | YATR | 8 cut(s) | 8, 14, 153, 270, 272, 330, 416, 513 |
| FaqI | GGGAC | 2 cut(s) | 75, 555 |
| FatI | CATG | 1 cut(s) | 6 |
| FblI | GTMKAC | 1 cut(s) | 135 |
| Fnu4HI | GCNGC | 1 cut(s) | 368 |
| FokI | GGATG | 1 cut(s) | 229 |
| Fsp4HI | GCNGC | 1 cut(s) | 368 |
| FspBI | CTAG | 4 cut(s) | 212, 278, 506, 530 |
| GlaI | GCGC | 1 cut(s) | 581 |
| GluI | GCNGC | 1 cut(s) | 368 |
| HapII | CCGG | 2 cut(s) | 464, 469 |
| HgaI | GACGC | 1 cut(s) | 467 |
| HhaI | GCGC | 1 cut(s) | 582 |
| Hin1II | CATG | 1 cut(s) | 10 |
| Hin6I | GCGC | 1 cut(s) | 580 |
| HinP1I | GCGC | 1 cut(s) | 580 |
| HinfI | GANTC | 4 cut(s) | 36, 85, 395, 433 |
| HpaII | CCGG | 2 cut(s) | 464, 469 |
| HphI | GGTGA | 1 cut(s) | 431 |
| Hpy166II | GTNNAC | 4 cut(s) | 136, 552, 600, 602 |
| Hpy188I | TCNGA | 3 cut(s) | 66, 438, 568 |
| Hpy188III | TCNNGA | 2 cut(s) | 223, 392 |
| Hpy8I | GTNNAC | 4 cut(s) | 136, 552, 600, 602 |
| HpyAV | CCTTC | 2 cut(s) | 52, 61 |
| HpyCH4V | TGCA | 4 cut(s) | 42, 50, 244, 552 |
| HpyF3I | CTNAG | 4 cut(s) | 17, 54, 383, 606 |
| Hsp92II | CATG | 1 cut(s) | 10 |
| HspAI | GCGC | 1 cut(s) | 580 |
| Kzo9I | GATC | 4 cut(s) | 274, 355, 379, 388 |
| LpnPI | CCDG | 8 cut(s) | 95, 208, 230, 282, 306, 309, 477, 482 |
| Lsp1109I | GCAGC | 1 cut(s) | 379 |
| LweI | GCATC | 1 cut(s) | 37 |
| MaeI | CTAG | 4 cut(s) | 212, 278, 506, 530 |
| MaeIII | GTNAC | 1 cut(s) | 419 |
| MalI | GATC | 4 cut(s) | 276, 357, 381, 390 |
| MboI | GATC | 4 cut(s) | 274, 355, 379, 388 |
| MboII | GAAGA | 2 cut(s) | 140, 463 |
| MflI | RGATCY | 2 cut(s) | 274, 379 |
| MhlI | GDGCHC | 1 cut(s) | 554 |
| MluCI | AATT | 4 cut(s) | 25, 96, 120, 199 |
| MlyI | GAGTC | 1 cut(s) | 389 |
| MnlI | CCTC | 3 cut(s) | 175, 200, 482 |
| MseI | TTAA | 1 cut(s) | 144 |
| MspI | CCGG | 2 cut(s) | 464, 469 |
| MspR9I | CCNGG | 2 cut(s) | 297, 470 |
| MvaI | CCWGG | 1 cut(s) | 297 |
| NciI | CCSGG | 1 cut(s) | 470 |
| NdeII | GATC | 4 cut(s) | 274, 355, 379, 388 |
| NlaIII | CATG | 1 cut(s) | 10 |
| NlaIV | GGNNCC | 2 cut(s) | 303, 543 |
| NmuCI | GTSAC | 1 cut(s) | 419 |
| PfeI | GAWTC | 3 cut(s) | 36, 85, 433 |
| Pfl23II | CGTACG | 1 cut(s) | 341 |
| PinAI | ACCGGT | 1 cut(s) | 463 |
| PkrI | GCNGC | 1 cut(s) | 369 |
| PleI | GAGTC | 1 cut(s) | 389 |
| PpsI | GAGTC | 1 cut(s) | 389 |
| PshBI | ATTAAT | 1 cut(s) | 144 |
| Psp6I | CCWGG | 1 cut(s) | 295 |
| PspGI | CCWGG | 1 cut(s) | 295 |
| PspLI | CGTACG | 1 cut(s) | 341 |
| PspN4I | GGNNCC | 2 cut(s) | 303, 543 |
| PspPI | GGNCC | 4 cut(s) | 293, 461, 466, 542 |
| PsuI | RGATCY | 2 cut(s) | 274, 379 |
| RsaI | GTAC | 2 cut(s) | 343, 601 |
| RsaNI | GTAC | 2 cut(s) | 342, 600 |
| Rsr2I | CGGWCCG | 1 cut(s) | 466 |
| RsrII | CGGWCCG | 1 cut(s) | 466 |
| SaqAI | TTAA | 1 cut(s) | 144 |
| SatI | GCNGC | 1 cut(s) | 368 |
| Sau3AI | GATC | 4 cut(s) | 274, 355, 379, 388 |
| Sau96I | GGNCC | 4 cut(s) | 293, 461, 466, 542 |
| SchI | GAGTC | 1 cut(s) | 389 |
| ScrFI | CCNGG | 2 cut(s) | 297, 470 |
| SduI | GDGCHC | 1 cut(s) | 554 |
| SetI | ASST | 9 cut(s) | 186, 307, 325, 372, 406, 421, 511, 531, 607 |
| SfaNI | GCATC | 1 cut(s) | 37 |
| SinI | GGWCC | 4 cut(s) | 293, 461, 466, 542 |
| Sse9I | AATT | 4 cut(s) | 25, 96, 120, 199 |
| SsiI | CCGC | 2 cut(s) | 156, 291 |
| SspMI | CTAG | 4 cut(s) | 212, 278, 506, 530 |
| StyD4I | CCNGG | 2 cut(s) | 295, 468 |
| StyI | CCWWGG | 4 cut(s) | 159, 404, 505, 529 |
| TaqI | TCGA | 2 cut(s) | 127, 474 |
| TasI | AATT | 4 cut(s) | 25, 96, 120, 199 |
| TatI | WGTACW | 1 cut(s) | 599 |
| TfiI | GAWTC | 3 cut(s) | 36, 85, 433 |
| Tru1I | TTAA | 1 cut(s) | 144 |
| Tru9I | TTAA | 1 cut(s) | 144 |
| TscAI | CASTG | 1 cut(s) | 600 |
| TseFI | GTSAC | 1 cut(s) | 419 |
| TseI | GCWGC | 1 cut(s) | 367 |
| Tsp45I | GTSAC | 1 cut(s) | 419 |
| TspDTI | ATGAA | 3 cut(s) | 17, 130, 140 |
| TspRI | CASTG | 1 cut(s) | 600 |
| VneI | GTGCAC | 1 cut(s) | 550 |
| VpaK11BI | GGWCC | 4 cut(s) | 293, 461, 466, 542 |
| VspI | ATTAAT | 1 cut(s) | 144 |
| XapI | RAATTY | 1 cut(s) | 199 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 552 |
| XmaJI | CCTAGG | 2 cut(s) | 505, 529 |
| XmiI | GTMKAC | 1 cut(s) | 135 |
| XspI | CTAG | 4 cut(s) | 212, 278, 506, 530 |