ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 329, 422 |
| AccBSI | CCGCTC | 1 cut(s) | 198 |
| AccII | CGCG | 1 cut(s) | 44 |
| AciI | CCGC | 6 cut(s) | 42, 198, 297, 390, 492, 764 |
| AclWI | GGATC | 1 cut(s) | 64 |
| AcuI | CTGAAG | 1 cut(s) | 166 |
| AfaI | GTAC | 2 cut(s) | 267, 360 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 329, 422, 574, 609, 673 |
| AgsI | TTSAA | 3 cut(s) | 513, 740, 882 |
| AjiI | CACGTC | 1 cut(s) | 50 |
| AjnI | CCWGG | 2 cut(s) | 235, 847 |
| AluBI | AGCT | 5 cut(s) | 263, 356, 590, 803, 815 |
| AluI | AGCT | 5 cut(s) | 263, 356, 590, 803, 815 |
| Alw21I | GWGCWC | 1 cut(s) | 790 |
| AlwI | GGATC | 1 cut(s) | 64 |
| AoxI | GGCC | 1 cut(s) | 851 |
| ApeKI | GCWGC | 6 cut(s) | 214, 299, 392, 560, 800, 815 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 290, 383, 662 |
| AspLEI | GCGC | 1 cut(s) | 58 |
| AspS9I | GGNCC | 2 cut(s) | 233, 851 |
| AsuHPI | GGTGA | 5 cut(s) | 286, 379, 437, 637, 769 |
| AsuII | TTCGAA | 1 cut(s) | 104 |
| AvaII | GGWCC | 1 cut(s) | 233 |
| BbsI | GAAGAC | 2 cut(s) | 113, 172 |
| Bbv12I | GWGCWC | 1 cut(s) | 790 |
| BbvI | GCAGC | 6 cut(s) | 226, 311, 404, 572, 802, 812 |
| BccI | CCATC | 1 cut(s) | 851 |
| BceAI | ACGGC | 2 cut(s) | 9, 327 |
| BciT130I | CCWGG | 2 cut(s) | 237, 849 |
| BciVI | GTATCC | 1 cut(s) | 843 |
| BclI | TGATCA | 1 cut(s) | 718 |
| BfmI | CTRYAG | 2 cut(s) | 149, 798 |
| BfoI | RGCGCY | 1 cut(s) | 59 |
| BfuI | GTATCC | 1 cut(s) | 843 |
| BisI | GCNGC | 6 cut(s) | 215, 300, 393, 561, 801, 816 |
| BlsI | GCNGC | 6 cut(s) | 216, 301, 394, 562, 802, 817 |
| Bme1390I | CCNGG | 2 cut(s) | 237, 849 |
| Bme18I | GGWCC | 1 cut(s) | 233 |
| BmgBI | CACGTC | 1 cut(s) | 50 |
| BmgT120I | GGNCC | 2 cut(s) | 233, 851 |
| BmiI | GGNNCC | 1 cut(s) | 846 |
| BmrFI | CCNGG | 2 cut(s) | 237, 849 |
| BmsI | GCATC | 2 cut(s) | 479, 852 |
| BpiI | GAAGAC | 2 cut(s) | 113, 172 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 71, 103 |
| BpmI | CTGGAG | 2 cut(s) | 306, 399 |
| Bpu14I | TTCGAA | 1 cut(s) | 104 |
| BsaJI | CCNNGG | 4 cut(s) | 25, 303, 396, 848 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 829, 859 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 329, 422, 574, 609, 673 |
| Bse1I | ACTGG | 2 cut(s) | 323, 416 |
| BseBI | CCWGG | 2 cut(s) | 237, 849 |
| BseDI | CCNNGG | 4 cut(s) | 25, 303, 396, 848 |
| BseGI | GGATG | 2 cut(s) | 467, 867 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 329, 422, 574, 609, 673 |
| BseMII | CTCAG | 1 cut(s) | 795 |
| BseNI | ACTGG | 2 cut(s) | 323, 416 |
| BseXI | GCAGC | 6 cut(s) | 226, 311, 404, 572, 802, 812 |
| BsgI | GTGCAG | 1 cut(s) | 207 |
| Bsh1236I | CGCG | 1 cut(s) | 44 |
| BshFI | GGCC | 1 cut(s) | 853 |
| BsiHKAI | GWGCWC | 1 cut(s) | 790 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 329, 422, 574, 609, 673 |
| BsmI | GAATGC | 1 cut(s) | 778 |
| BsnI | GGCC | 1 cut(s) | 853 |
| Bsp119I | TTCGAA | 1 cut(s) | 104 |
| Bsp1286I | GDGCHC | 1 cut(s) | 790 |
| Bsp143I | GATC | 6 cut(s) | 69, 90, 139, 256, 349, 718 |
| BspACI | CCGC | 6 cut(s) | 42, 198, 297, 390, 492, 764 |
| BspANI | GGCC | 1 cut(s) | 853 |
| BspCNI | CTCAG | 1 cut(s) | 796 |
| BspFNI | CGCG | 1 cut(s) | 44 |
| BspLI | GGNNCC | 1 cut(s) | 846 |
| BspMAI | CTGCAG | 2 cut(s) | 153, 802 |
| BspPI | GGATC | 1 cut(s) | 64 |
| BspT104I | TTCGAA | 1 cut(s) | 104 |
| BsrBI | CCGCTC | 1 cut(s) | 198 |
| BsrI | ACTGG | 2 cut(s) | 323, 416 |
| BssECI | CCNNGG | 4 cut(s) | 25, 303, 396, 848 |
| BssMI | GATC | 6 cut(s) | 69, 90, 139, 256, 349, 718 |
| BssT1I | CCWWGG | 2 cut(s) | 303, 396 |
| Bst2UI | CCWGG | 2 cut(s) | 237, 849 |
| Bst4CI | ACNGT | 1 cut(s) | 170 |
| BstBI | TTCGAA | 1 cut(s) | 104 |
| BstC8I | GCNNGC | 1 cut(s) | 565 |
| BstDEI | CTNAG | 2 cut(s) | 621, 804 |
| BstDSI | CCRYGG | 1 cut(s) | 25 |
| BstEII | GGTNACC | 1 cut(s) | 425 |
| BstF5I | GGATG | 2 cut(s) | 467, 867 |
| BstFNI | CGCG | 1 cut(s) | 44 |
| BstH2I | RGCGCY | 1 cut(s) | 59 |
| BstHHI | GCGC | 1 cut(s) | 58 |
| BstKTI | GATC | 6 cut(s) | 72, 93, 142, 259, 352, 721 |
| BstMBI | GATC | 6 cut(s) | 69, 90, 139, 256, 349, 718 |
| BstNI | CCWGG | 2 cut(s) | 237, 849 |
| BstPI | GGTNACC | 1 cut(s) | 425 |
| BstSCI | CCNGG | 2 cut(s) | 235, 847 |
| BstSFI | CTRYAG | 2 cut(s) | 149, 798 |
| BstUI | CGCG | 1 cut(s) | 44 |
| BstV1I | GCAGC | 6 cut(s) | 226, 311, 404, 572, 802, 812 |
| BstV2I | GAAGAC | 2 cut(s) | 113, 172 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 225 |
| BsuI | GTATCC | 1 cut(s) | 843 |
| BsuRI | GGCC | 1 cut(s) | 853 |
| BtgI | CCRYGG | 1 cut(s) | 25 |
| BtrI | CACGTC | 1 cut(s) | 50 |
| BtsCI | GGATG | 2 cut(s) | 467, 867 |
| BtsI | GCAGTG | 2 cut(s) | 270, 363 |
| BtsIMutI | CAGTG | 3 cut(s) | 190, 270, 363 |
| Cac8I | GCNNGC | 1 cut(s) | 565 |
| CfoI | GCGC | 1 cut(s) | 58 |
| Cfr13I | GGNCC | 2 cut(s) | 233, 851 |
| CseI | GACGC | 1 cut(s) | 33 |
| Csp6I | GTAC | 2 cut(s) | 266, 359 |
| CviAII | CATG | 5 cut(s) | 225, 279, 329, 372, 422 |
| CviQI | GTAC | 2 cut(s) | 266, 359 |
| DdeI | CTNAG | 2 cut(s) | 621, 804 |
| DpnI | GATC | 6 cut(s) | 71, 92, 141, 258, 351, 720 |
| DpnII | GATC | 6 cut(s) | 69, 90, 139, 256, 349, 718 |
| Eco130I | CCWWGG | 2 cut(s) | 303, 396 |
| Eco32I | GATATC | 1 cut(s) | 161 |
| Eco47I | GGWCC | 1 cut(s) | 233 |
| Eco57I | CTGAAG | 1 cut(s) | 166 |
| Eco91I | GGTNACC | 1 cut(s) | 425 |
| EcoO65I | GGTNACC | 1 cut(s) | 425 |
| EcoRII | CCWGG | 2 cut(s) | 235, 847 |
| EcoRV | GATATC | 1 cut(s) | 161 |
| EcoT14I | CCWWGG | 2 cut(s) | 303, 396 |
| ErhI | CCWWGG | 2 cut(s) | 303, 396 |
| FaeI | CATG | 5 cut(s) | 228, 282, 332, 375, 425 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 804, 836 |
| FatI | CATG | 5 cut(s) | 224, 278, 328, 371, 421 |
| FbaI | TGATCA | 1 cut(s) | 718 |
| Fnu4HI | GCNGC | 6 cut(s) | 215, 300, 393, 561, 801, 816 |
| FokI | GGATG | 2 cut(s) | 474, 874 |
| Fsp4HI | GCNGC | 6 cut(s) | 215, 300, 393, 561, 801, 816 |
| GlaI | GCGC | 1 cut(s) | 57 |
| GluI | GCNGC | 6 cut(s) | 215, 300, 393, 561, 801, 816 |
| GsuI | CTGGAG | 2 cut(s) | 306, 399 |
| HaeII | RGCGCY | 1 cut(s) | 59 |
| HaeIII | GGCC | 1 cut(s) | 853 |
| HgaI | GACGC | 1 cut(s) | 33 |
| HhaI | GCGC | 1 cut(s) | 58 |
| Hin1II | CATG | 5 cut(s) | 228, 282, 332, 375, 425 |
| Hin6I | GCGC | 1 cut(s) | 56 |
| HinP1I | GCGC | 1 cut(s) | 56 |
| HinfI | GANTC | 1 cut(s) | 536 |
| HphI | GGTGA | 5 cut(s) | 286, 379, 437, 637, 769 |
| Hpy188I | TCNGA | 2 cut(s) | 135, 828 |
| Hpy188III | TCNNGA | 1 cut(s) | 518 |
| HpyAV | CCTTC | 4 cut(s) | 106, 572, 635, 835 |
| HpyCH4III | ACNGT | 1 cut(s) | 170 |
| HpyCH4IV | ACGT | 1 cut(s) | 49 |
| HpyCH4V | TGCA | 8 cut(s) | 151, 188, 275, 313, 368, 406, 470, 800 |
| HpyF3I | CTNAG | 2 cut(s) | 621, 804 |
| HpySE526I | ACGT | 1 cut(s) | 49 |
| Hsp92II | CATG | 5 cut(s) | 228, 282, 332, 375, 425 |
| HspAI | GCGC | 1 cut(s) | 56 |
| Ksp22I | TGATCA | 1 cut(s) | 718 |
| Kzo9I | GATC | 6 cut(s) | 69, 90, 139, 256, 349, 718 |
| LmnI | GCTCC | 1 cut(s) | 850 |
| LpnPI | CCDG | 9 cut(s) | 38, 174, 222, 249, 336, 429, 834, 861, 867 |
| Lsp1109I | GCAGC | 6 cut(s) | 226, 311, 404, 572, 802, 812 |
| LweI | GCATC | 2 cut(s) | 479, 852 |
| MaeII | ACGT | 1 cut(s) | 49 |
| MaeIII | GTNAC | 3 cut(s) | 45, 425, 757 |
| MalI | GATC | 6 cut(s) | 71, 92, 141, 258, 351, 720 |
| MbiI | CCGCTC | 1 cut(s) | 198 |
| MboI | GATC | 6 cut(s) | 69, 90, 139, 256, 349, 718 |
| MboII | GAAGA | 4 cut(s) | 118, 172, 533, 536 |
| MfeI | CAATTG | 1 cut(s) | 604 |
| MhlI | GDGCHC | 1 cut(s) | 790 |
| MluCI | AATT | 4 cut(s) | 62, 438, 604, 740 |
| MmeI | TCCRAC | 1 cut(s) | 97 |
| MnlI | CCTC | 5 cut(s) | 97, 194, 330, 423, 603 |
| MroXI | GAANNNNTTC | 3 cut(s) | 290, 383, 662 |
| MseI | TTAA | 1 cut(s) | 33 |
| MslI | CAYNNNNRTG | 1 cut(s) | 223 |
| MspA1I | CMGCKG | 2 cut(s) | 492, 803 |
| MspR9I | CCNGG | 2 cut(s) | 237, 849 |
| MunI | CAATTG | 1 cut(s) | 604 |
| Mva1269I | GAATGC | 1 cut(s) | 778 |
| MvaI | CCWGG | 2 cut(s) | 237, 849 |
| MvnI | CGCG | 1 cut(s) | 44 |
| NdeII | GATC | 6 cut(s) | 69, 90, 139, 256, 349, 718 |
| NlaIII | CATG | 5 cut(s) | 228, 282, 332, 375, 425 |
| NlaIV | GGNNCC | 1 cut(s) | 846 |
| NmuCI | GTSAC | 3 cut(s) | 45, 425, 757 |
| NspV | TTCGAA | 1 cut(s) | 104 |
| PctI | GAATGC | 1 cut(s) | 778 |
| PdmI | GAANNNNTTC | 3 cut(s) | 290, 383, 662 |
| PfeI | GAWTC | 1 cut(s) | 536 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 329, 422 |
| PkrI | GCNGC | 6 cut(s) | 216, 301, 394, 562, 802, 817 |
| Psp6I | CCWGG | 2 cut(s) | 235, 847 |
| PspEI | GGTNACC | 1 cut(s) | 425 |
| PspGI | CCWGG | 2 cut(s) | 235, 847 |
| PspN4I | GGNNCC | 1 cut(s) | 846 |
| PspPI | GGNCC | 2 cut(s) | 233, 851 |
| PstI | CTGCAG | 2 cut(s) | 153, 802 |
| PvuII | CAGCTG | 1 cut(s) | 803 |
| RsaI | GTAC | 2 cut(s) | 267, 360 |
| RsaNI | GTAC | 2 cut(s) | 266, 359 |
| RseI | CAYNNNNRTG | 1 cut(s) | 223 |
| SaqAI | TTAA | 1 cut(s) | 33 |
| SatI | GCNGC | 6 cut(s) | 215, 300, 393, 561, 801, 816 |
| Sau3AI | GATC | 6 cut(s) | 69, 90, 139, 256, 349, 718 |
| Sau96I | GGNCC | 2 cut(s) | 233, 851 |
| ScrFI | CCNGG | 2 cut(s) | 237, 849 |
| SduI | GDGCHC | 1 cut(s) | 790 |
| SfaNI | GCATC | 2 cut(s) | 479, 852 |
| SfcI | CTRYAG | 2 cut(s) | 149, 798 |
| SfuI | TTCGAA | 1 cut(s) | 104 |
| SinI | GGWCC | 1 cut(s) | 233 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 223 |
| Sse9I | AATT | 4 cut(s) | 62, 438, 604, 740 |
| SsiI | CCGC | 6 cut(s) | 42, 198, 297, 390, 492, 764 |
| SspI | AATATT | 1 cut(s) | 888 |
| StyD4I | CCNGG | 2 cut(s) | 235, 847 |
| StyI | CCWWGG | 2 cut(s) | 303, 396 |
| TaaI | ACNGT | 1 cut(s) | 170 |
| TaiI | ACGT | 1 cut(s) | 52 |
| TaqI | TCGA | 4 cut(s) | 89, 104, 259, 352 |
| TasI | AATT | 4 cut(s) | 62, 438, 604, 740 |
| TfiI | GAWTC | 1 cut(s) | 536 |
| Tru1I | TTAA | 1 cut(s) | 33 |
| Tru9I | TTAA | 1 cut(s) | 33 |
| TscAI | CASTG | 3 cut(s) | 190, 277, 370 |
| TseFI | GTSAC | 3 cut(s) | 45, 425, 757 |
| TseI | GCWGC | 6 cut(s) | 214, 299, 392, 560, 800, 815 |
| Tsp45I | GTSAC | 3 cut(s) | 45, 425, 757 |
| TspDTI | ATGAA | 4 cut(s) | 317, 410, 443, 785 |
| TspRI | CASTG | 3 cut(s) | 190, 277, 370 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 329, 422 |
| VpaK11BI | GGWCC | 1 cut(s) | 233 |
| XmnI | GAANNNNTTC | 3 cut(s) | 290, 383, 662 |