ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 114 |
| Acc36I | ACCTGC | 1 cut(s) | 436 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 398 |
| AciI | CCGC | 2 cut(s) | 138, 1058 |
| AclWI | GGATC | 2 cut(s) | 97, 333 |
| AcsI | RAATTY | 1 cut(s) | 1065 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 398, 502, 658, 835 |
| AgsI | TTSAA | 3 cut(s) | 170, 482, 1007 |
| AjiI | CACGTC | 1 cut(s) | 67 |
| AjnI | CCWGG | 2 cut(s) | 347, 590 |
| AluBI | AGCT | 3 cut(s) | 130, 226, 284 |
| AluI | AGCT | 3 cut(s) | 130, 226, 284 |
| Alw21I | GWGCWC | 3 cut(s) | 286, 933, 1048 |
| Alw26I | GTCTC | 6 cut(s) | 60, 100, 396, 574, 726, 878 |
| AlwI | GGATC | 2 cut(s) | 97, 333 |
| Ama87I | CYCGRG | 1 cut(s) | 372 |
| AoxI | GGCC | 1 cut(s) | 852 |
| ApeKI | GCWGC | 1 cut(s) | 226 |
| ApoI | RAATTY | 1 cut(s) | 1065 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 38, 70 |
| AspS9I | GGNCC | 4 cut(s) | 302, 493, 780, 852 |
| AsuC2I | CCSGG | 1 cut(s) | 659 |
| AsuHPI | GGTGA | 2 cut(s) | 224, 818 |
| AvaI | CYCGRG | 1 cut(s) | 372 |
| AvaII | GGWCC | 3 cut(s) | 302, 493, 780 |
| AxyI | CCTNAGG | 1 cut(s) | 501 |
| BaeGI | GKGCMC | 1 cut(s) | 664 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 360, 393, 545, 578 |
| BanII | GRGCYC | 1 cut(s) | 286 |
| Bbv12I | GWGCWC | 3 cut(s) | 286, 933, 1048 |
| BbvI | GCAGC | 1 cut(s) | 213 |
| BccI | CCATC | 3 cut(s) | 14, 156, 734 |
| BceAI | ACGGC | 1 cut(s) | 680 |
| BciT130I | CCWGG | 2 cut(s) | 349, 592 |
| BclI | TGATCA | 1 cut(s) | 880 |
| BcnI | CCSGG | 1 cut(s) | 659 |
| BcoDI | GTCTC | 6 cut(s) | 60, 100, 396, 574, 726, 878 |
| BfaI | CTAG | 3 cut(s) | 26, 1023, 1084 |
| BfmI | CTRYAG | 1 cut(s) | 631 |
| BfuAI | ACCTGC | 1 cut(s) | 436 |
| BisI | GCNGC | 1 cut(s) | 227 |
| BlpI | GCTNAGC | 1 cut(s) | 537 |
| BlsI | GCNGC | 1 cut(s) | 228 |
| Bme1390I | CCNGG | 3 cut(s) | 349, 592, 659 |
| Bme18I | GGWCC | 3 cut(s) | 302, 493, 780 |
| BmeT110I | CYCGRG | 1 cut(s) | 372 |
| BmgBI | CACGTC | 1 cut(s) | 67 |
| BmgT120I | GGNCC | 4 cut(s) | 302, 493, 780, 852 |
| BmiI | GGNNCC | 1 cut(s) | 494 |
| BmrFI | CCNGG | 3 cut(s) | 349, 592, 659 |
| BmsI | GCATC | 1 cut(s) | 449 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 706, 738, 915, 947 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 537 |
| BpuEI | CTTGAG | 2 cut(s) | 556, 716 |
| BpuMI | CCSGG | 1 cut(s) | 659 |
| BsaBI | GATNNNNATC | 2 cut(s) | 46, 975 |
| BsaI | GGTCTC | 2 cut(s) | 396, 574 |
| BsaJI | CCNNGG | 3 cut(s) | 197, 696, 783 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 243, 273, 393, 423 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 398, 502, 658, 835 |
| Bse1I | ACTGG | 1 cut(s) | 327 |
| Bse21I | CCTNAGG | 1 cut(s) | 501 |
| Bse8I | GATNNNNATC | 2 cut(s) | 46, 975 |
| BseBI | CCWGG | 2 cut(s) | 349, 592 |
| BseDI | CCNNGG | 3 cut(s) | 197, 696, 783 |
| BseGI | GGATG | 1 cut(s) | 745 |
| BseJI | GATNNNNATC | 2 cut(s) | 46, 975 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 398, 502, 658, 835 |
| BseMII | CTCAG | 3 cut(s) | 252, 515, 883 |
| BseNI | ACTGG | 1 cut(s) | 327 |
| BseRI | GAGGAG | 3 cut(s) | 267, 713, 770 |
| BseSI | GKGCMC | 1 cut(s) | 664 |
| BseXI | GCAGC | 1 cut(s) | 213 |
| Bsh1285I | CGRYCG | 1 cut(s) | 44 |
| BshFI | GGCC | 1 cut(s) | 854 |
| BsiEI | CGRYCG | 1 cut(s) | 44 |
| BsiHKAI | GWGCWC | 3 cut(s) | 286, 933, 1048 |
| BsiHKCI | CYCGRG | 1 cut(s) | 372 |
| BsiSI | CCGG | 1 cut(s) | 658 |
| BslFI | GGGAC | 2 cut(s) | 564, 977 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 398, 502, 658, 835 |
| BsmAI | GTCTC | 6 cut(s) | 60, 100, 396, 574, 726, 878 |
| BsmBI | CGTCTC | 1 cut(s) | 60 |
| BsmFI | GGGAC | 2 cut(s) | 564, 977 |
| BsmI | GAATGC | 1 cut(s) | 1036 |
| BsnI | GGCC | 1 cut(s) | 854 |
| Bso31I | GGTCTC | 2 cut(s) | 396, 574 |
| BsoBI | CYCGRG | 1 cut(s) | 372 |
| Bsp1286I | GDGCHC | 4 cut(s) | 286, 664, 933, 1048 |
| Bsp143I | GATC | 5 cut(s) | 41, 89, 325, 844, 880 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 537 |
| BspACI | CCGC | 2 cut(s) | 138, 1058 |
| BspANI | GGCC | 1 cut(s) | 854 |
| BspCNI | CTCAG | 3 cut(s) | 251, 514, 882 |
| BspLI | GGNNCC | 1 cut(s) | 494 |
| BspMI | ACCTGC | 1 cut(s) | 436 |
| BspPI | GGATC | 2 cut(s) | 97, 333 |
| BspTNI | GGTCTC | 2 cut(s) | 396, 574 |
| BsrI | ACTGG | 1 cut(s) | 327 |
| BssECI | CCNNGG | 3 cut(s) | 197, 696, 783 |
| BssMI | GATC | 5 cut(s) | 41, 89, 325, 844, 880 |
| BssT1I | CCWWGG | 2 cut(s) | 197, 783 |
| Bst2UI | CCWGG | 2 cut(s) | 349, 592 |
| Bst4CI | ACNGT | 3 cut(s) | 780, 833, 994 |
| Bst6I | CTCTTC | 1 cut(s) | 747 |
| BstC8I | GCNNGC | 1 cut(s) | 987 |
| BstDEI | CTNAG | 6 cut(s) | 238, 501, 537, 819, 869, 945 |
| BstEII | GGTNACC | 2 cut(s) | 133, 806 |
| BstF5I | GGATG | 1 cut(s) | 745 |
| BstKTI | GATC | 5 cut(s) | 44, 92, 328, 847, 883 |
| BstMAI | GTCTC | 6 cut(s) | 60, 100, 396, 574, 726, 878 |
| BstMBI | GATC | 5 cut(s) | 41, 89, 325, 844, 880 |
| BstMCI | CGRYCG | 1 cut(s) | 44 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 592 |
| BstNI | CCWGG | 2 cut(s) | 349, 592 |
| BstNSI | RCATGY | 2 cut(s) | 236, 989 |
| BstPI | GGTNACC | 2 cut(s) | 133, 806 |
| BstSCI | CCNGG | 3 cut(s) | 347, 590, 657 |
| BstSFI | CTRYAG | 1 cut(s) | 631 |
| BstSLI | GKGCMC | 1 cut(s) | 664 |
| BstV1I | GCAGC | 1 cut(s) | 213 |
| BstX2I | RGATCY | 1 cut(s) | 89 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 294 |
| BstYI | RGATCY | 1 cut(s) | 89 |
| Bsu36I | CCTNAGG | 1 cut(s) | 501 |
| BsuRI | GGCC | 1 cut(s) | 854 |
| BtgZI | GCGATG | 1 cut(s) | 426 |
| BtrI | CACGTC | 1 cut(s) | 67 |
| BtsCI | GGATG | 1 cut(s) | 745 |
| BtsIMutI | CAGTG | 1 cut(s) | 963 |
| BveI | ACCTGC | 1 cut(s) | 436 |
| Cac8I | GCNNGC | 1 cut(s) | 987 |
| Cfr13I | GGNCC | 4 cut(s) | 302, 493, 780, 852 |
| CseI | GACGC | 1 cut(s) | 251 |
| CviAII | CATG | 6 cut(s) | 59, 102, 233, 398, 407, 986 |
| DdeI | CTNAG | 6 cut(s) | 238, 501, 537, 819, 869, 945 |
| DpnI | GATC | 5 cut(s) | 43, 91, 327, 846, 882 |
| DpnII | GATC | 5 cut(s) | 41, 89, 325, 844, 880 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 114 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 114 |
| Eam1104I | CTCTTC | 1 cut(s) | 747 |
| EarI | CTCTTC | 1 cut(s) | 747 |
| Ecl136II | GAGCTC | 1 cut(s) | 284 |
| Eco130I | CCWWGG | 2 cut(s) | 197, 783 |
| Eco24I | GRGCYC | 1 cut(s) | 286 |
| Eco31I | GGTCTC | 2 cut(s) | 396, 574 |
| Eco32I | GATATC | 1 cut(s) | 522 |
| Eco47I | GGWCC | 3 cut(s) | 302, 493, 780 |
| Eco53kI | GAGCTC | 1 cut(s) | 284 |
| Eco81I | CCTNAGG | 1 cut(s) | 501 |
| Eco88I | CYCGRG | 1 cut(s) | 372 |
| Eco91I | GGTNACC | 2 cut(s) | 133, 806 |
| EcoICRI | GAGCTC | 1 cut(s) | 284 |
| EcoO65I | GGTNACC | 2 cut(s) | 133, 806 |
| EcoRII | CCWGG | 2 cut(s) | 347, 590 |
| EcoRV | GATATC | 1 cut(s) | 522 |
| EcoT14I | CCWWGG | 2 cut(s) | 197, 783 |
| EcoT22I | ATGCAT | 2 cut(s) | 588, 987 |
| EcoT38I | GRGCYC | 1 cut(s) | 286 |
| ErhI | CCWWGG | 2 cut(s) | 197, 783 |
| Esp3I | CGTCTC | 1 cut(s) | 60 |
| FaeI | CATG | 6 cut(s) | 62, 105, 236, 401, 410, 989 |
| FaqI | GGGAC | 2 cut(s) | 564, 977 |
| FatI | CATG | 6 cut(s) | 58, 101, 232, 397, 406, 985 |
| FauNDI | CATATG | 1 cut(s) | 981 |
| FbaI | TGATCA | 1 cut(s) | 880 |
| Fnu4HI | GCNGC | 1 cut(s) | 227 |
| FokI | GGATG | 1 cut(s) | 752 |
| FriOI | GRGCYC | 1 cut(s) | 286 |
| Fsp4HI | GCNGC | 1 cut(s) | 227 |
| FspBI | CTAG | 3 cut(s) | 26, 1023, 1084 |
| GluI | GCNGC | 1 cut(s) | 227 |
| HaeIII | GGCC | 1 cut(s) | 854 |
| HapII | CCGG | 1 cut(s) | 658 |
| HgaI | GACGC | 1 cut(s) | 251 |
| Hin1II | CATG | 6 cut(s) | 62, 105, 236, 401, 410, 989 |
| HinfI | GANTC | 6 cut(s) | 160, 185, 683, 859, 902, 1003 |
| HpaII | CCGG | 1 cut(s) | 658 |
| HphI | GGTGA | 2 cut(s) | 224, 818 |
| Hpy166II | GTNNAC | 1 cut(s) | 64 |
| Hpy188I | TCNGA | 9 cut(s) | 41, 241, 306, 355, 476, 513, 526, 682, 844 |
| Hpy188III | TCNNGA | 5 cut(s) | 170, 266, 422, 451, 503 |
| Hpy8I | GTNNAC | 1 cut(s) | 64 |
| Hpy99I | CGWCG | 1 cut(s) | 55 |
| HpyAV | CCTTC | 5 cut(s) | 238, 242, 354, 428, 451 |
| HpyCH4III | ACNGT | 3 cut(s) | 780, 833, 994 |
| HpyCH4IV | ACGT | 2 cut(s) | 66, 966 |
| HpyCH4V | TGCA | 5 cut(s) | 101, 368, 440, 586, 985 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 592 |
| HpyF3I | CTNAG | 6 cut(s) | 238, 501, 537, 819, 869, 945 |
| HpySE526I | ACGT | 2 cut(s) | 66, 966 |
| Hsp92II | CATG | 6 cut(s) | 62, 105, 236, 401, 410, 989 |
| Ksp22I | TGATCA | 1 cut(s) | 880 |
| Kzo9I | GATC | 5 cut(s) | 41, 89, 325, 844, 880 |
| LmnI | GCTCC | 4 cut(s) | 281, 289, 936, 1051 |
| Lsp1109I | GCAGC | 1 cut(s) | 213 |
| LweI | GCATC | 1 cut(s) | 449 |
| MaeI | CTAG | 3 cut(s) | 26, 1023, 1084 |
| MaeII | ACGT | 2 cut(s) | 66, 966 |
| MaeIII | GTNAC | 2 cut(s) | 133, 806 |
| MalI | GATC | 5 cut(s) | 43, 91, 327, 846, 882 |
| MboI | GATC | 5 cut(s) | 41, 89, 325, 844, 880 |
| MboII | GAAGA | 2 cut(s) | 466, 764 |
| MflI | RGATCY | 1 cut(s) | 89 |
| MhlI | GDGCHC | 4 cut(s) | 286, 664, 933, 1048 |
| MluCI | AATT | 5 cut(s) | 393, 579, 607, 645, 1065 |
| MlyI | GAGTC | 2 cut(s) | 154, 896 |
| MmeI | TCCRAC | 1 cut(s) | 717 |
| Mph1103I | ATGCAT | 2 cut(s) | 588, 987 |
| MslI | CAYNNNNRTG | 1 cut(s) | 984 |
| MspA1I | CMGCKG | 1 cut(s) | 130 |
| MspI | CCGG | 1 cut(s) | 658 |
| MspR9I | CCNGG | 3 cut(s) | 349, 592, 659 |
| Mva1269I | GAATGC | 1 cut(s) | 1036 |
| MvaI | CCWGG | 2 cut(s) | 349, 592 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 592 |
| NciI | CCSGG | 1 cut(s) | 659 |
| NdeI | CATATG | 1 cut(s) | 981 |
| NdeII | GATC | 5 cut(s) | 41, 89, 325, 844, 880 |
| NlaIII | CATG | 6 cut(s) | 62, 105, 236, 401, 410, 989 |
| NlaIV | GGNNCC | 1 cut(s) | 494 |
| NmuCI | GTSAC | 1 cut(s) | 806 |
| NsiI | ATGCAT | 2 cut(s) | 588, 987 |
| NspI | RCATGY | 2 cut(s) | 236, 989 |
| PaeI | GCATGC | 1 cut(s) | 989 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 50 |
| PctI | GAATGC | 1 cut(s) | 1036 |
| PfeI | GAWTC | 4 cut(s) | 185, 683, 859, 1003 |
| PflFI | GACNNNGTC | 1 cut(s) | 407 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 398 |
| PkrI | GCNGC | 1 cut(s) | 228 |
| Ple19I | CGATCG | 1 cut(s) | 44 |
| PleI | GAGTC | 2 cut(s) | 154, 896 |
| PpsI | GAGTC | 2 cut(s) | 154, 896 |
| Psp124BI | GAGCTC | 1 cut(s) | 286 |
| Psp6I | CCWGG | 2 cut(s) | 347, 590 |
| PspEI | GGTNACC | 2 cut(s) | 133, 806 |
| PspGI | CCWGG | 2 cut(s) | 347, 590 |
| PspN4I | GGNNCC | 1 cut(s) | 494 |
| PspPI | GGNCC | 4 cut(s) | 302, 493, 780, 852 |
| PsuI | RGATCY | 1 cut(s) | 89 |
| PsyI | GACNNNGTC | 1 cut(s) | 407 |
| PvuI | CGATCG | 1 cut(s) | 44 |
| PvuII | CAGCTG | 1 cut(s) | 130 |
| RseI | CAYNNNNRTG | 1 cut(s) | 984 |
| SacI | GAGCTC | 1 cut(s) | 286 |
| SatI | GCNGC | 1 cut(s) | 227 |
| Sau3AI | GATC | 5 cut(s) | 41, 89, 325, 844, 880 |
| Sau96I | GGNCC | 4 cut(s) | 302, 493, 780, 852 |
| SchI | GAGTC | 2 cut(s) | 154, 896 |
| ScrFI | CCNGG | 3 cut(s) | 349, 592, 659 |
| SduI | GDGCHC | 4 cut(s) | 286, 664, 933, 1048 |
| SfaNI | GCATC | 1 cut(s) | 449 |
| SfcI | CTRYAG | 1 cut(s) | 631 |
| SinI | GGWCC | 3 cut(s) | 302, 493, 780 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 984 |
| SmlI | CTYRAG | 2 cut(s) | 571, 731 |
| SmoI | CTYRAG | 2 cut(s) | 571, 731 |
| SphI | GCATGC | 1 cut(s) | 989 |
| Sse9I | AATT | 5 cut(s) | 393, 579, 607, 645, 1065 |
| SsiI | CCGC | 2 cut(s) | 138, 1058 |
| SspI | AATATT | 1 cut(s) | 938 |
| SspMI | CTAG | 3 cut(s) | 26, 1023, 1084 |
| SstI | GAGCTC | 1 cut(s) | 286 |
| StyD4I | CCNGG | 3 cut(s) | 347, 590, 657 |
| StyI | CCWWGG | 2 cut(s) | 197, 783 |
| TaaI | ACNGT | 3 cut(s) | 780, 833, 994 |
| TaiI | ACGT | 2 cut(s) | 69, 969 |
| TaqI | TCGA | 2 cut(s) | 44, 328 |
| TaqII | GACCGA | 2 cut(s) | 710, 825 |
| TasI | AATT | 5 cut(s) | 393, 579, 607, 645, 1065 |
| TfiI | GAWTC | 4 cut(s) | 185, 683, 859, 1003 |
| TscAI | CASTG | 1 cut(s) | 963 |
| TseFI | GTSAC | 1 cut(s) | 806 |
| TseI | GCWGC | 1 cut(s) | 226 |
| Tsp45I | GTSAC | 1 cut(s) | 806 |
| TspDTI | ATGAA | 4 cut(s) | 233, 386, 455, 1043 |
| TspGWI | ACGGA | 1 cut(s) | 1038 |
| TspRI | CASTG | 1 cut(s) | 963 |
| Tth111I | GACNNNGTC | 1 cut(s) | 407 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 398 |
| VpaK11BI | GGWCC | 3 cut(s) | 302, 493, 780 |
| XapI | RAATTY | 1 cut(s) | 1065 |
| XceI | RCATGY | 2 cut(s) | 236, 989 |
| XspI | CTAG | 3 cut(s) | 26, 1023, 1084 |
| Zsp2I | ATGCAT | 2 cut(s) | 588, 987 |