ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 358 |
| AciI | CCGC | 5 cut(s) | 196, 234, 356, 494, 517 |
| AcsI | RAATTY | 1 cut(s) | 321 |
| AdeI | CACNNNGTG | 1 cut(s) | 53 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 240 |
| AgsI | TTSAA | 3 cut(s) | 61, 107, 563 |
| AjnI | CCWGG | 2 cut(s) | 226, 417 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 455, 487 |
| Alw26I | GTCTC | 2 cut(s) | 114, 452 |
| AoxI | GGCC | 1 cut(s) | 231 |
| ApoI | RAATTY | 1 cut(s) | 321 |
| AspA2I | CCTAGG | 1 cut(s) | 154 |
| AspLEI | GCGC | 1 cut(s) | 204 |
| AspS9I | GGNCC | 4 cut(s) | 231, 415, 519, 542 |
| AsuC2I | CCSGG | 1 cut(s) | 386 |
| AsuHPI | GGTGA | 1 cut(s) | 514 |
| AvaII | GGWCC | 3 cut(s) | 415, 519, 542 |
| AvrII | CCTAGG | 1 cut(s) | 154 |
| BbsI | GAAGAC | 2 cut(s) | 281, 358 |
| BccI | CCATC | 2 cut(s) | 179, 341 |
| BceAI | ACGGC | 1 cut(s) | 507 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 129, 163 |
| BciT130I | CCWGG | 2 cut(s) | 228, 419 |
| BclI | TGATCA | 1 cut(s) | 163 |
| BcnI | CCSGG | 1 cut(s) | 386 |
| BcoDI | GTCTC | 2 cut(s) | 114, 452 |
| BfaI | CTAG | 1 cut(s) | 155 |
| BfoI | RGCGCY | 1 cut(s) | 205 |
| BglII | AGATCT | 1 cut(s) | 63 |
| BisI | GCNGC | 1 cut(s) | 234 |
| BlnI | CCTAGG | 1 cut(s) | 154 |
| BlsI | GCNGC | 1 cut(s) | 235 |
| Bme1390I | CCNGG | 3 cut(s) | 228, 386, 419 |
| Bme18I | GGWCC | 3 cut(s) | 415, 519, 542 |
| BmgT120I | GGNCC | 4 cut(s) | 231, 415, 519, 542 |
| BmiI | GGNNCC | 3 cut(s) | 232, 383, 543 |
| BmrFI | CCNGG | 3 cut(s) | 228, 386, 419 |
| BmsI | GCATC | 2 cut(s) | 137, 341 |
| BpiI | GAAGAC | 2 cut(s) | 281, 358 |
| BpmI | CTGGAG | 1 cut(s) | 383 |
| BpuEI | CTTGAG | 1 cut(s) | 248 |
| BpuMI | CCSGG | 1 cut(s) | 386 |
| BsaBI | GATNNNNATC | 1 cut(s) | 68 |
| BsaJI | CCNNGG | 4 cut(s) | 154, 227, 293, 418 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 240 |
| Bse1I | ACTGG | 2 cut(s) | 366, 556 |
| Bse8I | GATNNNNATC | 1 cut(s) | 68 |
| BseBI | CCWGG | 2 cut(s) | 228, 419 |
| BseDI | CCNNGG | 4 cut(s) | 154, 227, 293, 418 |
| BseGI | GGATG | 1 cut(s) | 352 |
| BseJI | GATNNNNATC | 1 cut(s) | 68 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 240 |
| BseNI | ACTGG | 2 cut(s) | 366, 556 |
| BseRI | GAGGAG | 1 cut(s) | 188 |
| Bsh1236I | CGCG | 1 cut(s) | 358 |
| BshFI | GGCC | 1 cut(s) | 233 |
| BsiSI | CCGG | 1 cut(s) | 385 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 240 |
| BsmAI | GTCTC | 2 cut(s) | 114, 452 |
| BsmBI | CGTCTC | 2 cut(s) | 114, 452 |
| BsnI | GGCC | 1 cut(s) | 233 |
| Bsp143I | GATC | 3 cut(s) | 63, 69, 163 |
| BspACI | CCGC | 5 cut(s) | 196, 234, 356, 494, 517 |
| BspANI | GGCC | 1 cut(s) | 233 |
| BspFNI | CGCG | 1 cut(s) | 358 |
| BspLI | GGNNCC | 3 cut(s) | 232, 383, 543 |
| BsrI | ACTGG | 2 cut(s) | 366, 556 |
| BssECI | CCNNGG | 4 cut(s) | 154, 227, 293, 418 |
| BssMI | GATC | 3 cut(s) | 63, 69, 163 |
| BssT1I | CCWWGG | 1 cut(s) | 154 |
| Bst2UI | CCWGG | 2 cut(s) | 228, 419 |
| Bst4CI | ACNGT | 2 cut(s) | 221, 287 |
| BstC8I | GCNNGC | 1 cut(s) | 54 |
| BstDSI | CCRYGG | 1 cut(s) | 293 |
| BstF5I | GGATG | 1 cut(s) | 352 |
| BstFNI | CGCG | 1 cut(s) | 358 |
| BstH2I | RGCGCY | 1 cut(s) | 205 |
| BstHHI | GCGC | 1 cut(s) | 204 |
| BstKTI | GATC | 3 cut(s) | 66, 72, 166 |
| BstMAI | GTCTC | 2 cut(s) | 114, 452 |
| BstMBI | GATC | 3 cut(s) | 63, 69, 163 |
| BstNI | CCWGG | 2 cut(s) | 228, 419 |
| BstSCI | CCNGG | 3 cut(s) | 226, 384, 417 |
| BstUI | CGCG | 1 cut(s) | 358 |
| BstV2I | GAAGAC | 2 cut(s) | 281, 358 |
| BstX2I | RGATCY | 1 cut(s) | 63 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 377, 444 |
| BstYI | RGATCY | 1 cut(s) | 63 |
| BsuRI | GGCC | 1 cut(s) | 233 |
| BtgI | CCRYGG | 1 cut(s) | 293 |
| BtgZI | GCGATG | 1 cut(s) | 160 |
| BtsCI | GGATG | 1 cut(s) | 352 |
| BtsI | GCAGTG | 1 cut(s) | 518 |
| BtsIMutI | CAGTG | 1 cut(s) | 518 |
| Cac8I | GCNNGC | 1 cut(s) | 54 |
| CfoI | GCGC | 1 cut(s) | 204 |
| Cfr13I | GGNCC | 4 cut(s) | 231, 415, 519, 542 |
| CseI | GACGC | 1 cut(s) | 131 |
| CviAII | CATG | 2 cut(s) | 167, 377 |
| CviJI | RGCY | 4 cut(s) | 233, 269, 369, 392 |
| CviKI_1 | RGCY | 4 cut(s) | 233, 269, 369, 392 |
| DpnI | GATC | 3 cut(s) | 65, 71, 165 |
| DpnII | GATC | 3 cut(s) | 63, 69, 163 |
| DraIII | CACNNNGTG | 1 cut(s) | 53 |
| EciI | GGCGGA | 2 cut(s) | 509, 532 |
| Eco130I | CCWWGG | 1 cut(s) | 154 |
| Eco32I | GATATC | 1 cut(s) | 259 |
| Eco47I | GGWCC | 3 cut(s) | 415, 519, 542 |
| EcoRII | CCWGG | 2 cut(s) | 226, 417 |
| EcoRV | GATATC | 1 cut(s) | 259 |
| EcoT14I | CCWWGG | 1 cut(s) | 154 |
| EcoT22I | ATGCAT | 1 cut(s) | 378 |
| ErhI | CCWWGG | 1 cut(s) | 154 |
| Esp3I | CGTCTC | 2 cut(s) | 114, 452 |
| FaeI | CATG | 2 cut(s) | 170, 380 |
| FaiI | YATR | 7 cut(s) | 168, 194, 378, 402, 429, 439, 441 |
| FatI | CATG | 2 cut(s) | 166, 376 |
| FbaI | TGATCA | 1 cut(s) | 163 |
| Fnu4HI | GCNGC | 1 cut(s) | 234 |
| FokI | GGATG | 1 cut(s) | 359 |
| Fsp4HI | GCNGC | 1 cut(s) | 234 |
| FspBI | CTAG | 1 cut(s) | 155 |
| GlaI | GCGC | 1 cut(s) | 203 |
| GluI | GCNGC | 1 cut(s) | 234 |
| GsuI | CTGGAG | 1 cut(s) | 383 |
| HaeII | RGCGCY | 1 cut(s) | 205 |
| HaeIII | GGCC | 1 cut(s) | 233 |
| HapII | CCGG | 1 cut(s) | 385 |
| HgaI | GACGC | 1 cut(s) | 131 |
| HhaI | GCGC | 1 cut(s) | 204 |
| Hin1II | CATG | 2 cut(s) | 170, 380 |
| Hin6I | GCGC | 1 cut(s) | 202 |
| HinP1I | GCGC | 1 cut(s) | 202 |
| HinfI | GANTC | 2 cut(s) | 248, 452 |
| HpaII | CCGG | 1 cut(s) | 385 |
| HphI | GGTGA | 1 cut(s) | 514 |
| Hpy166II | GTNNAC | 1 cut(s) | 415 |
| Hpy188I | TCNGA | 3 cut(s) | 119, 337, 457 |
| Hpy188III | TCNNGA | 4 cut(s) | 16, 67, 100, 545 |
| Hpy8I | GTNNAC | 1 cut(s) | 415 |
| HpyAV | CCTTC | 3 cut(s) | 51, 173, 457 |
| HpyCH4III | ACNGT | 2 cut(s) | 221, 287 |
| HpyCH4IV | ACGT | 1 cut(s) | 6 |
| HpyCH4V | TGCA | 4 cut(s) | 150, 170, 376, 404 |
| HpySE526I | ACGT | 1 cut(s) | 6 |
| Hsp92II | CATG | 2 cut(s) | 170, 380 |
| HspAI | GCGC | 1 cut(s) | 202 |
| Ksp22I | TGATCA | 1 cut(s) | 163 |
| Kzo9I | GATC | 3 cut(s) | 63, 69, 163 |
| LweI | GCATC | 2 cut(s) | 137, 341 |
| MaeI | CTAG | 1 cut(s) | 155 |
| MaeII | ACGT | 1 cut(s) | 6 |
| MalI | GATC | 3 cut(s) | 65, 71, 165 |
| MboI | GATC | 3 cut(s) | 63, 69, 163 |
| MboII | GAAGA | 3 cut(s) | 73, 281, 363 |
| MflI | RGATCY | 1 cut(s) | 63 |
| MluCI | AATT | 5 cut(s) | 19, 89, 321, 341, 407 |
| MmeI | TCCRAC | 1 cut(s) | 453 |
| MnlI | CCTC | 5 cut(s) | 166, 169, 272, 382, 498 |
| Mph1103I | ATGCAT | 1 cut(s) | 378 |
| MseI | TTAA | 2 cut(s) | 315, 528 |
| MspA1I | CMGCKG | 1 cut(s) | 236 |
| MspI | CCGG | 1 cut(s) | 385 |
| MspR9I | CCNGG | 3 cut(s) | 228, 386, 419 |
| MvaI | CCWGG | 2 cut(s) | 228, 419 |
| MvnI | CGCG | 1 cut(s) | 358 |
| NciI | CCSGG | 1 cut(s) | 386 |
| NdeII | GATC | 3 cut(s) | 63, 69, 163 |
| NlaIII | CATG | 2 cut(s) | 170, 380 |
| NlaIV | GGNNCC | 3 cut(s) | 232, 383, 543 |
| NsiI | ATGCAT | 1 cut(s) | 378 |
| PfeI | GAWTC | 2 cut(s) | 248, 452 |
| PfoI | TCCNGGA | 1 cut(s) | 384 |
| PkrI | GCNGC | 1 cut(s) | 235 |
| Psp6I | CCWGG | 2 cut(s) | 226, 417 |
| PspGI | CCWGG | 2 cut(s) | 226, 417 |
| PspN4I | GGNNCC | 3 cut(s) | 232, 383, 543 |
| PspPI | GGNCC | 4 cut(s) | 231, 415, 519, 542 |
| PsuI | RGATCY | 1 cut(s) | 63 |
| SaqAI | TTAA | 2 cut(s) | 315, 528 |
| SatI | GCNGC | 1 cut(s) | 234 |
| Sau3AI | GATC | 3 cut(s) | 63, 69, 163 |
| Sau96I | GGNCC | 4 cut(s) | 231, 415, 519, 542 |
| ScrFI | CCNGG | 3 cut(s) | 228, 386, 419 |
| SetI | ASST | 6 cut(s) | 9, 156, 420, 468, 524, 534 |
| SfaNI | GCATC | 2 cut(s) | 137, 341 |
| SinI | GGWCC | 3 cut(s) | 415, 519, 542 |
| SmlI | CTYRAG | 1 cut(s) | 263 |
| SmoI | CTYRAG | 1 cut(s) | 263 |
| Sse9I | AATT | 5 cut(s) | 19, 89, 321, 341, 407 |
| SsiI | CCGC | 5 cut(s) | 196, 234, 356, 494, 517 |
| SspMI | CTAG | 1 cut(s) | 155 |
| StyD4I | CCNGG | 3 cut(s) | 226, 384, 417 |
| StyI | CCWWGG | 1 cut(s) | 154 |
| TaaI | ACNGT | 2 cut(s) | 221, 287 |
| TaiI | ACGT | 1 cut(s) | 9 |
| TaqI | TCGA | 1 cut(s) | 135 |
| TasI | AATT | 5 cut(s) | 19, 89, 321, 341, 407 |
| TauI | GCSGC | 1 cut(s) | 236 |
| TfiI | GAWTC | 2 cut(s) | 248, 452 |
| Tru1I | TTAA | 2 cut(s) | 315, 528 |
| Tru9I | TTAA | 2 cut(s) | 315, 528 |
| TscAI | CASTG | 1 cut(s) | 518 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 282 |
| TspRI | CASTG | 1 cut(s) | 518 |
| VpaK11BI | GGWCC | 3 cut(s) | 415, 519, 542 |
| XapI | RAATTY | 1 cut(s) | 321 |
| XmaJI | CCTAGG | 1 cut(s) | 154 |
| XspI | CTAG | 1 cut(s) | 155 |
| Zsp2I | ATGCAT | 1 cut(s) | 378 |