ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 607 |
| AciI | CCGC | 4 cut(s) | 176, 188, 605, 838 |
| AclI | AACGTT | 1 cut(s) | 784 |
| AcoI | YGGCCR | 1 cut(s) | 612 |
| AcsI | RAATTY | 1 cut(s) | 709 |
| AcuI | CTGAAG | 2 cut(s) | 326, 828 |
| AfaI | GTAC | 1 cut(s) | 372 |
| AfeI | AGCGCT | 1 cut(s) | 210 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 563, 867 |
| AgsI | TTSAA | 3 cut(s) | 53, 61, 74 |
| AjiI | CACGTC | 2 cut(s) | 406, 647 |
| AjnI | CCWGG | 3 cut(s) | 14, 423, 512 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 769, 801 |
| AluBI | AGCT | 1 cut(s) | 337 |
| AluI | AGCT | 1 cut(s) | 337 |
| Alw21I | GWGCWC | 1 cut(s) | 339 |
| Alw26I | GTCTC | 1 cut(s) | 734 |
| Ama87I | CYCGRG | 1 cut(s) | 662 |
| Aor51HI | AGCGCT | 1 cut(s) | 210 |
| AoxI | GGCC | 4 cut(s) | 345, 382, 612, 858 |
| ApeKI | GCWGC | 5 cut(s) | 44, 148, 211, 391, 602 |
| ApoI | RAATTY | 1 cut(s) | 709 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 211, 243 |
| AspLEI | GCGC | 1 cut(s) | 211 |
| AspS9I | GGNCC | 2 cut(s) | 467, 858 |
| AsuC2I | CCSGG | 1 cut(s) | 401 |
| AsuHPI | GGTGA | 4 cut(s) | 578, 728, 824, 827 |
| AvaI | CYCGRG | 1 cut(s) | 662 |
| AvaII | GGWCC | 1 cut(s) | 467 |
| BanI | GGYRCC | 1 cut(s) | 607 |
| BanII | GRGCYC | 3 cut(s) | 339, 451, 670 |
| Bbv12I | GWGCWC | 1 cut(s) | 339 |
| BbvI | GCAGC | 5 cut(s) | 31, 135, 198, 403, 589 |
| BccI | CCATC | 1 cut(s) | 218 |
| BceAI | ACGGC | 1 cut(s) | 9 |
| BciT130I | CCWGG | 3 cut(s) | 16, 425, 514 |
| BclI | TGATCA | 4 cut(s) | 568, 655, 814, 886 |
| BcnI | CCSGG | 1 cut(s) | 401 |
| BcoDI | GTCTC | 1 cut(s) | 734 |
| BfmI | CTRYAG | 1 cut(s) | 531 |
| BfoI | RGCGCY | 1 cut(s) | 212 |
| BisI | GCNGC | 5 cut(s) | 45, 149, 212, 392, 603 |
| BlpI | GCTNAGC | 1 cut(s) | 410 |
| BlsI | GCNGC | 5 cut(s) | 46, 150, 213, 393, 604 |
| Bme1390I | CCNGG | 4 cut(s) | 16, 401, 425, 514 |
| Bme18I | GGWCC | 1 cut(s) | 467 |
| BmeT110I | CYCGRG | 1 cut(s) | 662 |
| BmgBI | CACGTC | 2 cut(s) | 406, 647 |
| BmgT120I | GGNCC | 2 cut(s) | 467, 858 |
| BmiI | GGNNCC | 3 cut(s) | 450, 469, 609 |
| BmrFI | CCNGG | 4 cut(s) | 16, 401, 425, 514 |
| BmrI | ACTGGG | 1 cut(s) | 733 |
| BmsI | GCATC | 3 cut(s) | 88, 268, 378 |
| BmuI | ACTGGG | 1 cut(s) | 733 |
| BpmI | CTGGAG | 1 cut(s) | 776 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 410 |
| BpuMI | CCSGG | 1 cut(s) | 401 |
| BsaAI | YACGTR | 2 cut(s) | 374, 459 |
| BsaJI | CCNNGG | 5 cut(s) | 25, 308, 442, 562, 789 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 563, 867 |
| Bse118I | RCCGGY | 2 cut(s) | 255, 610 |
| Bse1I | ACTGG | 2 cut(s) | 739, 759 |
| Bse3DI | GCAATG | 1 cut(s) | 302 |
| BseBI | CCWGG | 3 cut(s) | 16, 425, 514 |
| BseDI | CCNNGG | 5 cut(s) | 25, 308, 442, 562, 789 |
| BseGI | GGATG | 4 cut(s) | 79, 124, 298, 595 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 563, 867 |
| BseMI | GCAATG | 1 cut(s) | 302 |
| BseMII | CTCAG | 2 cut(s) | 363, 401 |
| BseNI | ACTGG | 2 cut(s) | 739, 759 |
| BseRI | GAGGAG | 2 cut(s) | 773, 776 |
| BseXI | GCAGC | 5 cut(s) | 31, 135, 198, 403, 589 |
| BshFI | GGCC | 4 cut(s) | 347, 384, 614, 860 |
| BshNI | GGYRCC | 1 cut(s) | 607 |
| BsiHKAI | GWGCWC | 1 cut(s) | 339 |
| BsiHKCI | CYCGRG | 1 cut(s) | 662 |
| BsiSI | CCGG | 4 cut(s) | 41, 256, 400, 611 |
| BslFI | GGGAC | 4 cut(s) | 204, 416, 453, 657 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 563, 867 |
| BsmAI | GTCTC | 1 cut(s) | 734 |
| BsmFI | GGGAC | 4 cut(s) | 204, 416, 453, 657 |
| BsnI | GGCC | 4 cut(s) | 347, 384, 614, 860 |
| BsoBI | CYCGRG | 1 cut(s) | 662 |
| Bsp1286I | GDGCHC | 3 cut(s) | 339, 451, 670 |
| Bsp143I | GATC | 5 cut(s) | 90, 568, 655, 814, 886 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 410 |
| Bsp19I | CCATGG | 1 cut(s) | 562 |
| BspACI | CCGC | 4 cut(s) | 176, 188, 605, 838 |
| BspANI | GGCC | 4 cut(s) | 347, 384, 614, 860 |
| BspCNI | CTCAG | 2 cut(s) | 362, 402 |
| BspHI | TCATGA | 1 cut(s) | 889 |
| BspLI | GGNNCC | 3 cut(s) | 450, 469, 609 |
| BspT107I | GGYRCC | 1 cut(s) | 607 |
| BsrDI | GCAATG | 1 cut(s) | 302 |
| BsrFI | RCCGGY | 2 cut(s) | 255, 610 |
| BsrI | ACTGG | 2 cut(s) | 739, 759 |
| BssAI | RCCGGY | 2 cut(s) | 255, 610 |
| BssECI | CCNNGG | 5 cut(s) | 25, 308, 442, 562, 789 |
| BssMI | GATC | 5 cut(s) | 90, 568, 655, 814, 886 |
| BssT1I | CCWWGG | 3 cut(s) | 308, 562, 789 |
| Bst2UI | CCWGG | 3 cut(s) | 16, 425, 514 |
| BstBAI | YACGTR | 2 cut(s) | 374, 459 |
| BstC8I | GCNNGC | 2 cut(s) | 485, 612 |
| BstDEI | CTNAG | 4 cut(s) | 349, 410, 433, 825 |
| BstDSI | CCRYGG | 3 cut(s) | 25, 442, 562 |
| BstF5I | GGATG | 4 cut(s) | 79, 124, 298, 595 |
| BstH2I | RGCGCY | 1 cut(s) | 212 |
| BstHHI | GCGC | 1 cut(s) | 211 |
| BstKTI | GATC | 5 cut(s) | 93, 571, 658, 817, 889 |
| BstMAI | GTCTC | 1 cut(s) | 734 |
| BstMBI | GATC | 5 cut(s) | 90, 568, 655, 814, 886 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 611 |
| BstNI | CCWGG | 3 cut(s) | 16, 425, 514 |
| BstSCI | CCNGG | 4 cut(s) | 14, 399, 423, 512 |
| BstSFI | CTRYAG | 1 cut(s) | 531 |
| BstSNI | TACGTA | 1 cut(s) | 374 |
| BstV1I | GCAGC | 5 cut(s) | 31, 135, 198, 403, 589 |
| BsuRI | GGCC | 4 cut(s) | 347, 384, 614, 860 |
| BtgI | CCRYGG | 3 cut(s) | 25, 442, 562 |
| BtrI | CACGTC | 2 cut(s) | 406, 647 |
| BtsCI | GGATG | 4 cut(s) | 79, 124, 298, 595 |
| BtsI | GCAGTG | 1 cut(s) | 415 |
| BtsIMutI | CAGTG | 2 cut(s) | 190, 415 |
| Cac8I | GCNNGC | 2 cut(s) | 485, 612 |
| CciI | TCATGA | 1 cut(s) | 889 |
| CfoI | GCGC | 1 cut(s) | 211 |
| Cfr10I | RCCGGY | 2 cut(s) | 255, 610 |
| Cfr13I | GGNCC | 2 cut(s) | 467, 858 |
| CsiI | ACCWGGT | 2 cut(s) | 423, 512 |
| Csp6I | GTAC | 1 cut(s) | 371 |
| CviAII | CATG | 4 cut(s) | 563, 572, 798, 890 |
| CviQI | GTAC | 1 cut(s) | 371 |
| DdeI | CTNAG | 4 cut(s) | 349, 410, 433, 825 |
| DpnI | GATC | 5 cut(s) | 92, 570, 657, 816, 888 |
| DpnII | GATC | 5 cut(s) | 90, 568, 655, 814, 886 |
| EaeI | YGGCCR | 1 cut(s) | 612 |
| Ecl136II | GAGCTC | 1 cut(s) | 337 |
| Eco105I | TACGTA | 1 cut(s) | 374 |
| Eco130I | CCWWGG | 3 cut(s) | 308, 562, 789 |
| Eco147I | AGGCCT | 1 cut(s) | 347 |
| Eco24I | GRGCYC | 3 cut(s) | 339, 451, 670 |
| Eco47I | GGWCC | 1 cut(s) | 467 |
| Eco47III | AGCGCT | 1 cut(s) | 210 |
| Eco53kI | GAGCTC | 1 cut(s) | 337 |
| Eco57I | CTGAAG | 2 cut(s) | 326, 828 |
| Eco88I | CYCGRG | 1 cut(s) | 662 |
| EcoICRI | GAGCTC | 1 cut(s) | 337 |
| EcoRII | CCWGG | 3 cut(s) | 14, 423, 512 |
| EcoT14I | CCWWGG | 3 cut(s) | 308, 562, 789 |
| EcoT38I | GRGCYC | 3 cut(s) | 339, 451, 670 |
| ErhI | CCWWGG | 3 cut(s) | 308, 562, 789 |
| FaeI | CATG | 4 cut(s) | 566, 575, 801, 893 |
| FaqI | GGGAC | 4 cut(s) | 204, 416, 453, 657 |
| FatI | CATG | 4 cut(s) | 562, 571, 797, 889 |
| FauI | CCCGC | 1 cut(s) | 181 |
| FbaI | TGATCA | 4 cut(s) | 568, 655, 814, 886 |
| Fnu4HI | GCNGC | 5 cut(s) | 45, 149, 212, 392, 603 |
| FokI | GGATG | 4 cut(s) | 66, 131, 305, 602 |
| FriOI | GRGCYC | 3 cut(s) | 339, 451, 670 |
| Fsp4HI | GCNGC | 5 cut(s) | 45, 149, 212, 392, 603 |
| GlaI | GCGC | 1 cut(s) | 210 |
| GluI | GCNGC | 5 cut(s) | 45, 149, 212, 392, 603 |
| GsuI | CTGGAG | 1 cut(s) | 776 |
| HaeII | RGCGCY | 1 cut(s) | 212 |
| HaeIII | GGCC | 4 cut(s) | 347, 384, 614, 860 |
| HapII | CCGG | 4 cut(s) | 41, 256, 400, 611 |
| HhaI | GCGC | 1 cut(s) | 211 |
| Hin1II | CATG | 4 cut(s) | 566, 575, 801, 893 |
| Hin6I | GCGC | 1 cut(s) | 209 |
| HinP1I | GCGC | 1 cut(s) | 209 |
| HincII | GTYRAC | 1 cut(s) | 804 |
| HindII | GTYRAC | 1 cut(s) | 804 |
| HinfI | GANTC | 4 cut(s) | 238, 296, 689, 727 |
| HpaI | GTTAAC | 1 cut(s) | 804 |
| HpaII | CCGG | 4 cut(s) | 41, 256, 400, 611 |
| HphI | GGTGA | 4 cut(s) | 578, 728, 824, 827 |
| Hpy166II | GTNNAC | 3 cut(s) | 430, 510, 804 |
| Hpy188I | TCNGA | 4 cut(s) | 352, 520, 688, 819 |
| Hpy188III | TCNNGA | 3 cut(s) | 163, 470, 890 |
| Hpy8I | GTNNAC | 3 cut(s) | 430, 510, 804 |
| HpyAV | CCTTC | 8 cut(s) | 106, 349, 350, 353, 374, 406, 616, 803 |
| HpyCH4IV | ACGT | 6 cut(s) | 373, 405, 458, 506, 646, 784 |
| HpyCH4V | TGCA | 4 cut(s) | 151, 280, 391, 676 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 611 |
| HpyF3I | CTNAG | 4 cut(s) | 349, 410, 433, 825 |
| HpySE526I | ACGT | 6 cut(s) | 373, 405, 458, 506, 646, 784 |
| Hsp92II | CATG | 4 cut(s) | 566, 575, 801, 893 |
| HspAI | GCGC | 1 cut(s) | 209 |
| KroI | GCCGGC | 1 cut(s) | 610 |
| KroNI | GCCGGC | 1 cut(s) | 612 |
| Ksp22I | TGATCA | 4 cut(s) | 568, 655, 814, 886 |
| KspAI | GTTAAC | 1 cut(s) | 804 |
| Kzo9I | GATC | 5 cut(s) | 90, 568, 655, 814, 886 |
| LmnI | GCTCC | 2 cut(s) | 342, 454 |
| Lsp1109I | GCAGC | 5 cut(s) | 31, 135, 198, 403, 589 |
| LweI | GCATC | 3 cut(s) | 88, 268, 378 |
| MabI | ACCWGGT | 2 cut(s) | 423, 512 |
| MaeII | ACGT | 6 cut(s) | 373, 405, 458, 506, 646, 784 |
| MaeIII | GTNAC | 2 cut(s) | 750, 793 |
| MalI | GATC | 5 cut(s) | 92, 570, 657, 816, 888 |
| MboI | GATC | 5 cut(s) | 90, 568, 655, 814, 886 |
| MboII | GAAGA | 3 cut(s) | 291, 517, 542 |
| MhlI | GDGCHC | 3 cut(s) | 339, 451, 670 |
| MluCI | AATT | 3 cut(s) | 19, 166, 709 |
| MlyI | GAGTC | 1 cut(s) | 736 |
| MmeI | TCCRAC | 1 cut(s) | 723 |
| MnlI | CCTC | 5 cut(s) | 358, 751, 754, 856, 886 |
| MroNI | GCCGGC | 1 cut(s) | 610 |
| MseI | TTAA | 4 cut(s) | 33, 143, 618, 803 |
| MslI | CAYNNNNRTG | 1 cut(s) | 894 |
| MspI | CCGG | 4 cut(s) | 41, 256, 400, 611 |
| MspR9I | CCNGG | 4 cut(s) | 16, 401, 425, 514 |
| MvaI | CCWGG | 3 cut(s) | 16, 425, 514 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 611 |
| NaeI | GCCGGC | 1 cut(s) | 612 |
| NciI | CCSGG | 1 cut(s) | 401 |
| NcoI | CCATGG | 1 cut(s) | 562 |
| NdeII | GATC | 5 cut(s) | 90, 568, 655, 814, 886 |
| NgoMIV | GCCGGC | 1 cut(s) | 610 |
| NlaIII | CATG | 4 cut(s) | 566, 575, 801, 893 |
| NlaIV | GGNNCC | 3 cut(s) | 450, 469, 609 |
| PagI | TCATGA | 1 cut(s) | 889 |
| PceI | AGGCCT | 1 cut(s) | 347 |
| PdiI | GCCGGC | 1 cut(s) | 612 |
| PfeI | GAWTC | 3 cut(s) | 238, 296, 689 |
| PfoI | TCCNGGA | 1 cut(s) | 399 |
| PkrI | GCNGC | 5 cut(s) | 46, 150, 213, 393, 604 |
| PleI | GAGTC | 1 cut(s) | 735 |
| PpsI | GAGTC | 1 cut(s) | 735 |
| Ppu21I | YACGTR | 2 cut(s) | 374, 459 |
| Psp124BI | GAGCTC | 1 cut(s) | 339 |
| Psp1406I | AACGTT | 1 cut(s) | 784 |
| Psp6I | CCWGG | 3 cut(s) | 14, 423, 512 |
| PspGI | CCWGG | 3 cut(s) | 14, 423, 512 |
| PspN4I | GGNNCC | 3 cut(s) | 450, 469, 609 |
| PspPI | GGNCC | 2 cut(s) | 467, 858 |
| RsaI | GTAC | 1 cut(s) | 372 |
| RsaNI | GTAC | 1 cut(s) | 371 |
| RseI | CAYNNNNRTG | 1 cut(s) | 894 |
| SacI | GAGCTC | 1 cut(s) | 339 |
| SaqAI | TTAA | 4 cut(s) | 33, 143, 618, 803 |
| SatI | GCNGC | 5 cut(s) | 45, 149, 212, 392, 603 |
| Sau3AI | GATC | 5 cut(s) | 90, 568, 655, 814, 886 |
| Sau96I | GGNCC | 2 cut(s) | 467, 858 |
| SchI | GAGTC | 1 cut(s) | 736 |
| ScrFI | CCNGG | 4 cut(s) | 16, 401, 425, 514 |
| SduI | GDGCHC | 3 cut(s) | 339, 451, 670 |
| SexAI | ACCWGGT | 2 cut(s) | 423, 512 |
| SfaNI | GCATC | 3 cut(s) | 88, 268, 378 |
| SfcI | CTRYAG | 1 cut(s) | 531 |
| SinI | GGWCC | 1 cut(s) | 467 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 894 |
| SnaBI | TACGTA | 1 cut(s) | 374 |
| Sse9I | AATT | 3 cut(s) | 19, 166, 709 |
| SseBI | AGGCCT | 1 cut(s) | 347 |
| SsiI | CCGC | 4 cut(s) | 176, 188, 605, 838 |
| SstI | GAGCTC | 1 cut(s) | 339 |
| StuI | AGGCCT | 1 cut(s) | 347 |
| StyD4I | CCNGG | 4 cut(s) | 14, 399, 423, 512 |
| StyI | CCWWGG | 3 cut(s) | 308, 562, 789 |
| TaiI | ACGT | 6 cut(s) | 376, 408, 461, 509, 649, 787 |
| TasI | AATT | 3 cut(s) | 19, 166, 709 |
| TfiI | GAWTC | 3 cut(s) | 238, 296, 689 |
| Tru1I | TTAA | 4 cut(s) | 33, 143, 618, 803 |
| Tru9I | TTAA | 4 cut(s) | 33, 143, 618, 803 |
| TscAI | CASTG | 2 cut(s) | 190, 422 |
| TseI | GCWGC | 5 cut(s) | 44, 148, 211, 391, 602 |
| TspDTI | ATGAA | 6 cut(s) | 17, 149, 291, 309, 344, 536 |
| TspRI | CASTG | 2 cut(s) | 190, 422 |
| VpaK11BI | GGWCC | 1 cut(s) | 467 |
| XapI | RAATTY | 1 cut(s) | 709 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 112 |