ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1239 |
| Acc36I | ACCTGC | 1 cut(s) | 229 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1325 |
| AccI | GTMKAC | 1 cut(s) | 428 |
| AciI | CCGC | 4 cut(s) | 151, 207, 422, 965 |
| AclWI | GGATC | 2 cut(s) | 44, 528 |
| AcsI | RAATTY | 1 cut(s) | 439 |
| AcuI | CTGAAG | 1 cut(s) | 990 |
| AcyI | GRCGYC | 1 cut(s) | 313 |
| AfaI | GTAC | 5 cut(s) | 478, 776, 815, 916, 1294 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 87, 154, 953, 1205, 1307, 1311, 1325 |
| AflIII | ACRYGT | 1 cut(s) | 603 |
| AgsI | TTSAA | 8 cut(s) | 67, 610, 667, 731, 863, 1040, 1148, 1216 |
| AjiI | CACGTC | 1 cut(s) | 1096 |
| AjnI | CCWGG | 4 cut(s) | 381, 431, 829, 925 |
| AluBI | AGCT | 6 cut(s) | 21, 551, 1079, 1083, 1345, 1409 |
| AluI | AGCT | 6 cut(s) | 21, 551, 1079, 1083, 1345, 1409 |
| Alw21I | GWGCWC | 3 cut(s) | 174, 472, 802 |
| Alw26I | GTCTC | 3 cut(s) | 747, 1019, 1027 |
| Alw44I | GTGCAC | 1 cut(s) | 170 |
| AlwI | GGATC | 2 cut(s) | 44, 528 |
| Ama87I | CYCGRG | 1 cut(s) | 948 |
| AoxI | GGCC | 1 cut(s) | 89 |
| ApaLI | GTGCAC | 1 cut(s) | 170 |
| ApoI | RAATTY | 1 cut(s) | 439 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 981 |
| AspS9I | GGNCC | 3 cut(s) | 355, 419, 1163 |
| AsuHPI | GGTGA | 3 cut(s) | 398, 626, 1192 |
| AsuNHI | GCTAGC | 1 cut(s) | 1079 |
| AvaI | CYCGRG | 1 cut(s) | 948 |
| AvaII | GGWCC | 3 cut(s) | 355, 419, 1163 |
| BaeGI | GKGCMC | 1 cut(s) | 174 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 510, 543 |
| Bbv12I | GWGCWC | 3 cut(s) | 174, 472, 802 |
| BbvCI | CCTCAGC | 1 cut(s) | 507 |
| BccI | CCATC | 6 cut(s) | 188, 281, 303, 833, 1203, 1223 |
| BciT130I | CCWGG | 4 cut(s) | 383, 433, 831, 927 |
| BciVI | GTATCC | 1 cut(s) | 868 |
| BclI | TGATCA | 1 cut(s) | 132 |
| BcoDI | GTCTC | 3 cut(s) | 747, 1019, 1027 |
| BfaI | CTAG | 7 cut(s) | 339, 531, 548, 584, 1080, 1116, 1167 |
| BfmI | CTRYAG | 2 cut(s) | 780, 1121 |
| BfuAI | ACCTGC | 1 cut(s) | 229 |
| BfuI | GTATCC | 1 cut(s) | 868 |
| BisI | GCNGC | 2 cut(s) | 208, 966 |
| BlsI | GCNGC | 2 cut(s) | 209, 967 |
| BmcAI | AGTACT | 1 cut(s) | 776 |
| Bme1390I | CCNGG | 4 cut(s) | 383, 433, 831, 927 |
| Bme18I | GGWCC | 3 cut(s) | 355, 419, 1163 |
| BmeT110I | CYCGRG | 1 cut(s) | 948 |
| BmgBI | CACGTC | 1 cut(s) | 1096 |
| BmgT120I | GGNCC | 3 cut(s) | 355, 419, 1163 |
| BmiI | GGNNCC | 2 cut(s) | 356, 357 |
| BmrFI | CCNGG | 4 cut(s) | 383, 433, 831, 927 |
| BmsI | GCATC | 4 cut(s) | 691, 712, 834, 1089 |
| BmtI | GCTAGC | 1 cut(s) | 1083 |
| BoxI | GACNNNNGTC | 1 cut(s) | 424 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1168, 1200 |
| BpmI | CTGGAG | 1 cut(s) | 1323 |
| Bpu10I | CCTNAGC | 1 cut(s) | 507 |
| BpuEI | CTTGAG | 1 cut(s) | 1088 |
| Bsa29I | ATCGAT | 2 cut(s) | 273, 285 |
| BsaHI | GRCGYC | 1 cut(s) | 313 |
| BsaJI | CCNNGG | 5 cut(s) | 57, 382, 404, 829, 947 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 62, 92 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 87, 154, 953, 1205, 1307, 1311, 1325 |
| Bse1I | ACTGG | 2 cut(s) | 916, 1305 |
| Bse3DI | GCAATG | 3 cut(s) | 49, 1319, 1380 |
| BseBI | CCWGG | 4 cut(s) | 383, 433, 831, 927 |
| BseCI | ATCGAT | 2 cut(s) | 273, 285 |
| BseDI | CCNNGG | 5 cut(s) | 57, 382, 404, 829, 947 |
| BseGI | GGATG | 8 cut(s) | 222, 238, 634, 706, 727, 849, 1021, 1214 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 87, 154, 953, 1205, 1307, 1311, 1325 |
| BseMI | GCAATG | 3 cut(s) | 49, 1319, 1380 |
| BseMII | CTCAG | 3 cut(s) | 498, 758, 1199 |
| BseNI | ACTGG | 2 cut(s) | 916, 1305 |
| BseRI | GAGGAG | 1 cut(s) | 1188 |
| BseSI | GKGCMC | 1 cut(s) | 174 |
| BseYI | CCCAGC | 1 cut(s) | 953 |
| BsgI | GTGCAG | 1 cut(s) | 257 |
| BshFI | GGCC | 1 cut(s) | 91 |
| BshVI | ATCGAT | 2 cut(s) | 273, 285 |
| BsiHKAI | GWGCWC | 3 cut(s) | 174, 472, 802 |
| BsiHKCI | CYCGRG | 1 cut(s) | 948 |
| BslFI | GGGAC | 2 cut(s) | 368, 1082 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 87, 154, 953, 1205, 1307, 1311, 1325 |
| BsmAI | GTCTC | 3 cut(s) | 747, 1019, 1027 |
| BsmFI | GGGAC | 2 cut(s) | 368, 1082 |
| BsnI | GGCC | 1 cut(s) | 91 |
| BsoBI | CYCGRG | 1 cut(s) | 948 |
| Bsp1286I | GDGCHC | 3 cut(s) | 174, 472, 802 |
| Bsp143I | GATC | 5 cut(s) | 36, 120, 132, 282, 533 |
| Bsp19I | CCATGG | 2 cut(s) | 57, 404 |
| BspACI | CCGC | 4 cut(s) | 151, 207, 422, 965 |
| BspANI | GGCC | 1 cut(s) | 91 |
| BspCNI | CTCAG | 3 cut(s) | 499, 757, 1198 |
| BspDI | ATCGAT | 2 cut(s) | 273, 285 |
| BspLI | GGNNCC | 2 cut(s) | 356, 357 |
| BspMI | ACCTGC | 1 cut(s) | 229 |
| BspOI | GCTAGC | 1 cut(s) | 1083 |
| BspPI | GGATC | 2 cut(s) | 44, 528 |
| BsrDI | GCAATG | 3 cut(s) | 49, 1319, 1380 |
| BsrI | ACTGG | 2 cut(s) | 916, 1305 |
| BssECI | CCNNGG | 5 cut(s) | 57, 382, 404, 829, 947 |
| BssMI | GATC | 5 cut(s) | 36, 120, 132, 282, 533 |
| BssNI | GRCGYC | 1 cut(s) | 313 |
| BssT1I | CCWWGG | 2 cut(s) | 57, 404 |
| Bst2UI | CCWGG | 4 cut(s) | 383, 433, 831, 927 |
| Bst4CI | ACNGT | 4 cut(s) | 474, 485, 880, 1111 |
| Bst6I | CTCTTC | 1 cut(s) | 405 |
| BstACI | GRCGYC | 1 cut(s) | 313 |
| BstC8I | GCNNGC | 5 cut(s) | 1081, 1302, 1347, 1371, 1407 |
| BstDEI | CTNAG | 5 cut(s) | 17, 507, 555, 744, 1185 |
| BstDSI | CCRYGG | 2 cut(s) | 57, 404 |
| BstEII | GGTNACC | 1 cut(s) | 386 |
| BstF5I | GGATG | 8 cut(s) | 222, 238, 634, 706, 727, 849, 1021, 1214 |
| BstKTI | GATC | 5 cut(s) | 39, 123, 135, 285, 536 |
| BstMAI | GTCTC | 3 cut(s) | 747, 1019, 1027 |
| BstMBI | GATC | 5 cut(s) | 36, 120, 132, 282, 533 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 27 |
| BstNI | CCWGG | 4 cut(s) | 383, 433, 831, 927 |
| BstNSI | RCATGY | 1 cut(s) | 1365 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 424 |
| BstPI | GGTNACC | 1 cut(s) | 386 |
| BstSCI | CCNGG | 4 cut(s) | 381, 431, 829, 925 |
| BstSFI | CTRYAG | 2 cut(s) | 780, 1121 |
| BstSLI | GKGCMC | 1 cut(s) | 174 |
| BstX2I | RGATCY | 2 cut(s) | 36, 533 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1209 |
| BstYI | RGATCY | 2 cut(s) | 36, 533 |
| Bsu15I | ATCGAT | 2 cut(s) | 273, 285 |
| BsuI | GTATCC | 1 cut(s) | 868 |
| BsuRI | GGCC | 1 cut(s) | 91 |
| BsuTUI | ATCGAT | 2 cut(s) | 273, 285 |
| BtgI | CCRYGG | 2 cut(s) | 57, 404 |
| BtrI | CACGTC | 1 cut(s) | 1096 |
| BtsCI | GGATG | 8 cut(s) | 222, 238, 634, 706, 727, 849, 1021, 1214 |
| BtsI | GCAGTG | 1 cut(s) | 909 |
| BtsIMutI | CAGTG | 5 cut(s) | 470, 490, 909, 1193, 1312 |
| BveI | ACCTGC | 1 cut(s) | 229 |
| Cac8I | GCNNGC | 5 cut(s) | 1081, 1302, 1347, 1371, 1407 |
| Cfr13I | GGNCC | 3 cut(s) | 355, 419, 1163 |
| ClaI | ATCGAT | 2 cut(s) | 273, 285 |
| CseI | GACGC | 2 cut(s) | 302, 333 |
| CsiI | ACCWGGT | 1 cut(s) | 431 |
| Csp6I | GTAC | 5 cut(s) | 477, 775, 814, 915, 1293 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 993, 1028 |
| CviQI | GTAC | 5 cut(s) | 477, 775, 814, 915, 1293 |
| DdeI | CTNAG | 5 cut(s) | 17, 507, 555, 744, 1185 |
| DpnI | GATC | 5 cut(s) | 38, 122, 134, 284, 535 |
| DpnII | GATC | 5 cut(s) | 36, 120, 132, 282, 533 |
| Eam1104I | CTCTTC | 1 cut(s) | 405 |
| EarI | CTCTTC | 1 cut(s) | 405 |
| Eco130I | CCWWGG | 2 cut(s) | 57, 404 |
| Eco147I | AGGCCT | 1 cut(s) | 91 |
| Eco47I | GGWCC | 3 cut(s) | 355, 419, 1163 |
| Eco57I | CTGAAG | 1 cut(s) | 990 |
| Eco88I | CYCGRG | 1 cut(s) | 948 |
| Eco91I | GGTNACC | 1 cut(s) | 386 |
| EcoO109I | RGGNCCY | 1 cut(s) | 355 |
| EcoO65I | GGTNACC | 1 cut(s) | 386 |
| EcoRI | GAATTC | 1 cut(s) | 439 |
| EcoRII | CCWGG | 4 cut(s) | 381, 431, 829, 925 |
| EcoT14I | CCWWGG | 2 cut(s) | 57, 404 |
| ErhI | CCWWGG | 2 cut(s) | 57, 404 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 969, 1001 |
| FaqI | GGGAC | 2 cut(s) | 368, 1082 |
| FbaI | TGATCA | 1 cut(s) | 132 |
| FblI | GTMKAC | 1 cut(s) | 428 |
| Fnu4HI | GCNGC | 2 cut(s) | 208, 966 |
| FokI | GGATG | 8 cut(s) | 229, 245, 641, 713, 734, 856, 1028, 1221 |
| Fsp4HI | GCNGC | 2 cut(s) | 208, 966 |
| FspBI | CTAG | 7 cut(s) | 339, 531, 548, 584, 1080, 1116, 1167 |
| GluI | GCNGC | 2 cut(s) | 208, 966 |
| GsaI | CCCAGC | 1 cut(s) | 957 |
| GsuI | CTGGAG | 1 cut(s) | 1323 |
| HaeIII | GGCC | 1 cut(s) | 91 |
| HgaI | GACGC | 2 cut(s) | 302, 333 |
| Hin1I | GRCGYC | 1 cut(s) | 313 |
| HincII | GTYRAC | 2 cut(s) | 142, 429 |
| HindII | GTYRAC | 2 cut(s) | 142, 429 |
| HinfI | GANTC | 3 cut(s) | 395, 922, 1183 |
| HphI | GGTGA | 3 cut(s) | 398, 626, 1192 |
| Hpy166II | GTNNAC | 6 cut(s) | 142, 172, 429, 477, 909, 944 |
| Hpy188I | TCNGA | 8 cut(s) | 125, 132, 349, 445, 688, 747, 1133, 1415 |
| Hpy188III | TCNNGA | 7 cut(s) | 306, 339, 531, 584, 1105, 1116, 1340 |
| Hpy8I | GTNNAC | 6 cut(s) | 142, 172, 429, 477, 909, 944 |
| Hpy99I | CGWCG | 1 cut(s) | 349 |
| HpyAV | CCTTC | 3 cut(s) | 172, 629, 1408 |
| HpyCH4III | ACNGT | 4 cut(s) | 474, 485, 880, 1111 |
| HpyCH4IV | ACGT | 4 cut(s) | 138, 144, 605, 1095 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 27 |
| HpyF3I | CTNAG | 5 cut(s) | 17, 507, 555, 744, 1185 |
| HpySE526I | ACGT | 4 cut(s) | 138, 144, 605, 1095 |
| Hsp92I | GRCGYC | 1 cut(s) | 313 |
| KflI | GGGWCCC | 1 cut(s) | 355 |
| Ksp22I | TGATCA | 1 cut(s) | 132 |
| Kzo9I | GATC | 5 cut(s) | 36, 120, 132, 282, 533 |
| LmnI | GCTCC | 2 cut(s) | 1201, 1390 |
| LweI | GCATC | 4 cut(s) | 691, 712, 834, 1089 |
| MabI | ACCWGGT | 1 cut(s) | 431 |
| MaeI | CTAG | 7 cut(s) | 339, 531, 548, 584, 1080, 1116, 1167 |
| MaeII | ACGT | 4 cut(s) | 138, 144, 605, 1095 |
| MaeIII | GTNAC | 5 cut(s) | 299, 377, 386, 1091, 1180 |
| MalI | GATC | 5 cut(s) | 38, 122, 134, 284, 535 |
| MboI | GATC | 5 cut(s) | 36, 120, 132, 282, 533 |
| MboII | GAAGA | 3 cut(s) | 392, 571, 899 |
| MfeI | CAATTG | 2 cut(s) | 937, 1203 |
| MflI | RGATCY | 2 cut(s) | 36, 533 |
| MhlI | GDGCHC | 3 cut(s) | 174, 472, 802 |
| MlyI | GAGTC | 1 cut(s) | 1177 |
| MmeI | TCCRAC | 2 cut(s) | 327, 699 |
| MroXI | GAANNNNTTC | 1 cut(s) | 981 |
| MseI | TTAA | 1 cut(s) | 1221 |
| MslI | CAYNNNNRTG | 2 cut(s) | 575, 666 |
| MspR9I | CCNGG | 4 cut(s) | 383, 433, 831, 927 |
| MunI | CAATTG | 2 cut(s) | 937, 1203 |
| MvaI | CCWGG | 4 cut(s) | 383, 433, 831, 927 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 27 |
| NcoI | CCATGG | 2 cut(s) | 57, 404 |
| NdeII | GATC | 5 cut(s) | 36, 120, 132, 282, 533 |
| NheI | GCTAGC | 1 cut(s) | 1079 |
| NlaIV | GGNNCC | 2 cut(s) | 356, 357 |
| NmeAIII | GCCGAG | 1 cut(s) | 796 |
| NmuCI | GTSAC | 4 cut(s) | 377, 386, 1091, 1180 |
| NspI | RCATGY | 1 cut(s) | 1365 |
| PceI | AGGCCT | 1 cut(s) | 91 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 59, 1057 |
| PdmI | GAANNNNTTC | 1 cut(s) | 981 |
| PfeI | GAWTC | 2 cut(s) | 395, 922 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1325 |
| PkrI | GCNGC | 2 cut(s) | 209, 967 |
| PleI | GAGTC | 1 cut(s) | 1177 |
| PpsI | GAGTC | 1 cut(s) | 1177 |
| PpuMI | RGGWCCY | 1 cut(s) | 355 |
| PshAI | GACNNNNGTC | 1 cut(s) | 424 |
| PsiI | TTATAA | 1 cut(s) | 1239 |
| Psp5II | RGGWCCY | 1 cut(s) | 355 |
| Psp6I | CCWGG | 4 cut(s) | 381, 431, 829, 925 |
| PspEI | GGTNACC | 1 cut(s) | 386 |
| PspFI | CCCAGC | 1 cut(s) | 953 |
| PspGI | CCWGG | 4 cut(s) | 381, 431, 829, 925 |
| PspN4I | GGNNCC | 2 cut(s) | 356, 357 |
| PspPI | GGNCC | 3 cut(s) | 355, 419, 1163 |
| PspPPI | RGGWCCY | 1 cut(s) | 355 |
| PsuI | RGATCY | 2 cut(s) | 36, 533 |
| RsaI | GTAC | 5 cut(s) | 478, 776, 815, 916, 1294 |
| RsaNI | GTAC | 5 cut(s) | 477, 775, 814, 915, 1293 |
| RseI | CAYNNNNRTG | 2 cut(s) | 575, 666 |
| SalI | GTCGAC | 1 cut(s) | 427 |
| SaqAI | TTAA | 1 cut(s) | 1221 |
| SatI | GCNGC | 2 cut(s) | 208, 966 |
| Sau3AI | GATC | 5 cut(s) | 36, 120, 132, 282, 533 |
| Sau96I | GGNCC | 3 cut(s) | 355, 419, 1163 |
| ScaI | AGTACT | 1 cut(s) | 776 |
| SchI | GAGTC | 1 cut(s) | 1177 |
| ScrFI | CCNGG | 4 cut(s) | 383, 433, 831, 927 |
| SduI | GDGCHC | 3 cut(s) | 174, 472, 802 |
| SexAI | ACCWGGT | 1 cut(s) | 431 |
| SfaNI | GCATC | 4 cut(s) | 691, 712, 834, 1089 |
| SfcI | CTRYAG | 2 cut(s) | 780, 1121 |
| SinI | GGWCC | 3 cut(s) | 355, 419, 1163 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 575, 666 |
| SmlI | CTYRAG | 1 cut(s) | 1103 |
| SmoI | CTYRAG | 1 cut(s) | 1103 |
| SseBI | AGGCCT | 1 cut(s) | 91 |
| SsiI | CCGC | 4 cut(s) | 151, 207, 422, 965 |
| SspMI | CTAG | 7 cut(s) | 339, 531, 548, 584, 1080, 1116, 1167 |
| StuI | AGGCCT | 1 cut(s) | 91 |
| StyD4I | CCNGG | 4 cut(s) | 381, 431, 829, 925 |
| StyI | CCWWGG | 2 cut(s) | 57, 404 |
| TaaI | ACNGT | 4 cut(s) | 474, 485, 880, 1111 |
| TaiI | ACGT | 4 cut(s) | 141, 147, 608, 1098 |
| TaqI | TCGA | 6 cut(s) | 176, 273, 285, 307, 428, 1085 |
| TatI | WGTACW | 1 cut(s) | 774 |
| TauI | GCSGC | 2 cut(s) | 210, 968 |
| TfiI | GAWTC | 2 cut(s) | 395, 922 |
| Tru1I | TTAA | 1 cut(s) | 1221 |
| Tru9I | TTAA | 1 cut(s) | 1221 |
| TscAI | CASTG | 5 cut(s) | 477, 490, 909, 1193, 1312 |
| TseFI | GTSAC | 4 cut(s) | 377, 386, 1091, 1180 |
| Tsp45I | GTSAC | 4 cut(s) | 377, 386, 1091, 1180 |
| TspDTI | ATGAA | 6 cut(s) | 648, 767, 771, 801, 1127, 1391 |
| TspGWI | ACGGA | 1 cut(s) | 242 |
| TspRI | CASTG | 5 cut(s) | 477, 490, 909, 1193, 1312 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1325 |
| VneI | GTGCAC | 1 cut(s) | 170 |
| VpaK11BI | GGWCC | 3 cut(s) | 355, 419, 1163 |
| XapI | RAATTY | 1 cut(s) | 439 |
| XbaI | TCTAGA | 4 cut(s) | 338, 530, 583, 1115 |
| XceI | RCATGY | 1 cut(s) | 1365 |
| XmiI | GTMKAC | 1 cut(s) | 428 |
| XmnI | GAANNNNTTC | 1 cut(s) | 981 |
| XspI | CTAG | 7 cut(s) | 339, 531, 548, 584, 1080, 1116, 1167 |
| ZrmI | AGTACT | 1 cut(s) | 776 |